Otolith shape and size: The importance of age when determining indices for fish-stock separation

Abbasi, 1999, Curvature scale space image in shape similarity retrieval?, Multimed. Syst., 7, 467, 10.1007/s005300050147 Aha, 1991, Instance-based learning algorithms?, Mach. Learn., 6, 37, 10.1007/BF00153759 Amanatiadis, 2011, Evaluation of shape descriptors for shape-based image retrieval, IET Image Proc., 5, 493, 10.1049/iet-ipr.2009.0246 Ambroise, 2002, Selection bias in gene extraction on the basis of microarray gene-expression data, Proc. Natl. Acad. Sci., 99, 6562, 10.1073/pnas.102102699 Bagnall, 2014 Bagnall, 2006, A bit level representation for time series data mining with shape based similarity?, Data Min. Knowl. Discov., 13, 11, 10.1007/s10618-005-0028-0 Bani, 2013, Comparative morphology of the sagittal otolith in three species of south Caspian gobies, J. Fish Biol., 82, 1321, 10.1111/jfb.12073 Begg, 2000, Stock identification of haddock Melanogrammus aeglefinus on Georges Bank based on otolith shape analysis, Trans. Am. Fish. Soc., 129, 935, 10.1577/1548-8659(2000)129<0935:SIOHMA>2.3.CO;2 Begg, 2001, The use of internal Otolith morphometrics for identification of haddock (Melanogrammus aeglefinus) stocks on Georges Bank, Fish. Bull., 99 Begg, 2005, Otolith research and application: current directions in innovation and implementation, Mar. Freshw. Res., 56, 477, 10.1071/MF05111 Bermejo, 2007, Fish age categorization from otolith images using multi-class support vector machines?, Fish. Res., 84, 247, 10.1016/j.fishres.2006.11.021 Bird, 1986, Comparisons of herring otoliths using Fourier series shape analysis?, Can. J. Fish. Aquat.Sci., 43, 1228, 10.1139/f86-152 Bober, 2001, MPEG-7 visual shape descriptors?, IEEE Trans. Circuits Syst. Video Technol., 11, 716, 10.1109/76.927426 Breiman, 2001, Random forests?, Mach. Learn., 45, 5, 10.1023/A:1010933404324 Brophy, 2002, Tracing populations of Atlantic herring (Clupea harengus L.) in the Irish and Celtic Seas using otolith microstructure, ICES J. Mar. Sci.: J. Conseil, 59, 1305, 10.1006/jmsc.2002.1304 Brownlee, 2013 Burke, 2008, Shape analysis of otolith annuli in Atlantic herring (Clupea harengus); a new method for tracking fish populations?, Fish. Res., 91, 133, 10.1016/j.fishres.2007.11.013 Burke, 2008, Otolith shape analysis: its application for discriminating between stocks of Irish Sea and Celtic Sea herring (Clupea harengus) in the Irish Sea?, ICES J. Mar. Sci.: J. Conseil, 65, 1670, 10.1093/icesjms/fsn177 Burke, 2009, Temporal trends in stock origin and abundance of juvenile herring (Clupea harengus) in the Irish Sea, ICES J. Mar. Sci.: J. Conseil, 10.1093/icesjms/fsp140 Campana, 1993, Stock discrimination using otolith shape analysis, Can. J. Fish. Aquat. Sci., 50, 1062, 10.1139/f93-123 Cardinale, 2004, Effects of sex, stock, and environment on the shape of known-age Atlantic cod (Gadus morhua) otoliths, Can. J. Fish. Aquat. Sci., 61, 158, 10.1139/f03-151 Castonguay, 1991, Usefulness of Fourier analysis of otolith shape for Atlantic mackerel (Scomber scombrus) stock discrimination, Can. J. Fish. Aquat. Sci., 48, 296, 10.1139/f91-041 Cawley, 2010, On over-fitting in model selection and subsequent selection bias in performance evaluation, J. Mach. Learn. Res., 11, 2079 DeVries, 2002, Using otolith shape analysis to distinguish eastern Gulf of Mexico and Atlantic Ocean stocks of king mackerel, Fish. Res., 57, 51, 10.1016/S0165-7836(01)00332-0 Doering, 1990, Shape analysis of otoliths—a tool for indirect ageing of eel, Anguilla anguilla (L.)?, Int. Revue der gesamten Hydrobiologie und Hydrographie, 75, 737, 10.1002/iroh.19900750607 Duarte-Neto, 2008, The use of sagittal otoliths in discriminating stocks of common dolphinfish (Coryphaena hippurus) off northeastern Brazil using multishape descriptors?, ICES J. Mar. Sci.: J. Conseil, 65, 1144, 10.1093/icesjms/fsn090 Fablet, 2005, Automated fish age estimation from otolith images using statistical learning, Fish. Res., 72, 279, 10.1016/j.fishres.2004.10.008 Friedman, 1997, Bayesian network classifiers, Mach. Learn., 29, 131, 10.1023/A:1007465528199 Gagliano, 2004, Feeding history influences otolith shape in tropical fish, Mar. Ecol. Prog. Ser., 278, 291, 10.3354/meps278291 Galley, 2006, Combined methods of otolith shape analysis improve identification of spawning areas of Atlantic cod, ICES J. Mar. Sci.: J. Conseil, 63, 1710, 10.1016/j.icesjms.2006.06.014 Gonzales, 2002, vol. 6, 681 Hall, 2009, The WEKA data mining software: an update?, ACM SIGKDD Explor. Newsl., 11, 10, 10.1145/1656274.1656278 Hills, 2014, Classification of time series by shapelet transformation, Data Min. Knowl. Discov., 28, 851, 10.1007/s10618-013-0322-1 ICES (2013). "Report of the international bottom trawl survey working group (IBTSWG)." ICES CM 2013/SSGESST 10(272). ICES (2014). "Report of the working group of international pelagic surveys (WGIPS)." ICES CM 2014/SSGESST 1(360). Jalba, 2006, Shape representation and recognition through morphological curvature scale spaces?, IEEE Trans. Image Process., 15, 331, 10.1109/TIP.2005.860606 Keating, 2014, Otolith shape analysis of blue whiting suggests a complex stock structure at their spawning grounds in the Northeast Atlantic, Fish. Res., 157, 1, 10.1016/j.fishres.2014.03.009 Le Cessie, 1992, Ridge estimators in logistic regression, Appl. Stat., 191, 10.2307/2347628 Lewis, 1998, The independence assumption in information retrieval Lines, 2012, A shapelet transform for time series classification Lombarte, 2003, Specific Merluccius otolith growth patterns related to phylogenetics and environmental factors?, J. Mar. Biol. Assoc. U. K., 83, 277, 10.1017/S0025315403007070h Mérigot, 2007, Characterization of local populations of the common sole Solea solea (Pisces: soleidae) in the NW Mediterranean through otolith morphometrics and shape analysis, Mar. Biol., 151, 997, 10.1007/s00227-006-0549-0 Manurung, 2011 Mapp, 2013, Clupea harengus: intraspecies distinction using curvature scale space and shapelets-classification of North-sea and Thames Herring using boundary contour of Sagittal Otoliths, ICPRAM, 1, 138 Mille, 2015, Sagittal otolith morphogenesis asymmetry in marine fishes?, J. Fish Biol., 87, 646, 10.1111/jfb.12746 Mokhtarian, 1992, A theory of multiscale: curvature-based shape representation for planar curves, IEEE Trans. Pattern Anal. Mach. Intell., 14, 789, 10.1109/34.149591 Morales-Nin, 2000, Review of the growth regulation processes of otolith daily increment formation, Fish. Res., 46, 53, 10.1016/S0165-7836(00)00133-8 Otsu, 1975, A threshold selection method from gray-level histograms?, Automatica, 11, 23 Parisi-Baradad, 2005, Otolith shape contour analysis using affine transformation invariant wavelet transforms and curvature scale space representation, Mar. Freshw. Res., 56, 795, 10.1071/MF04162 Paul, 2013, Evaluation of otolith shape analysis as a tool for discriminating adults of Baltic cod stocks?, J. Appl. Ichthyol., 29, 743, 10.1111/jai.12145 Pearson, 1901, LIII. On lines and planes of closest fit to systems of points in space, Lond. Edinb. Dublin Philos. Mag. J. Sci., 2, 559, 10.1080/14786440109462720 Platt, 1999, 12 fast training of support vector machines using sequential minimal optimization, Adv. Kernel Methods, 185 Quinlan, 1993 Rodriguez, 2006, Rotation forest: a new classifier ensemble method, IEEE Trans. Pattern Anal. Mach. Intell., 28, 1619, 10.1109/TPAMI.2006.211 Sadighzadeh, 2014, Use of otolith shape for stock identification of John's snapper, Lutjanus johnii (Pisces: Lutjanidae), from the Persian Gulf and the Oman Sea, Fish. Res., 155, 59, 10.1016/j.fishres.2014.02.024 Shamir, 2010, Pattern recognition software and techniques for biological image analysis, PLoS Comput. Biol., 6, e1000974, 10.1371/journal.pcbi.1000974 Stransky, 2005, Geographic variation of golden redfish (Sebastes marinus) and deep-sea redfish (S. mentella) in the North Atlantic based on otolith shape analysis, ICES J. Mar. Sci.: J. Conseil, 62, 1691, 10.1016/j.icesjms.2005.05.012 Swain, 1991, Color indexing, Int. J. Comput. Vision, 7, 11, 10.1007/BF00130487 Torstensen, 2004, 14 Vignon, 2010, Environmental and genetic determinant of otolith shape revealed by a non-indigenous tropical fish, Mar. Ecol. Prog. Ser., 411, 231, 10.3354/meps08651 Vignon, 2012, Ontogenetic trajectories of otolith shape during shift in habitat use: interaction between otolith growth and environment, J. Exp. Mar. Biol. Ecol., 420, 26, 10.1016/j.jembe.2012.03.021 WEKA, 2002 Zhang, 2003, A comparative study of curvature scale space and Fourier descriptors for shape-based image retrieval, J. Vis. Commun. Image Represent., 14, 39, 10.1016/S1047-3203(03)00003-8 Zhang, 2003, Evaluation of MPEG-7 shape descriptors against other shape descriptors, Multimed. Syst., 9, 15, 10.1007/s00530-002-0075-y