Biofluid diagnostics by FTIR spectroscopy: A platform technology for cancer detection
Tài liệu tham khảo
Bray, 2018, Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries, CA, Canc. J. Clin., 68, 394, 10.3322/caac.21492
GLOBOCAN, 2018
WHO, 2018
Sawyers, 2004, Targeted cancer therapy, Nature, 432, 294, 10.1038/nature03095
Schiffman, 2015, Early detection of cancer: past, present, and future, Am. Soc. Clin. Oncol. Educ. B., 35, 57, 10.14694/EdBook_AM.2015.35.57
Sölétormos, 2016, Clinical use of cancer biomarkers in epithelial ovarian cancer: updated guidelines from the European group on tumor markers, 43
Mistry, 2003, Meta-analysis of prostate-specific antigen and digital rectal examination as screening tests for prostate carcinoma, J. Am. Board Fam. Pract., 16, 95, 10.3122/jabfm.16.2.95
Ballehaninna, 2012, The clinical utility of serum CA 19-9 in the diagnosis, prognosis and management of pancreatic adenocarcinoma: an evidence based appraisal, J. Gastrointest. Oncol., 3, 105
Fiala, 2018, Utility of circulating tumor DNA in cancer diagnostics with emphasis on early detection, BMC Med., 16, 166, 10.1186/s12916-018-1157-9
Lechowicz, 2016, Use of Fourier-transform infrared spectroscopy in the diagnosis of rheumatoid arthritis: a pilot study, Mol. Biol. Rep., 43, 1321, 10.1007/s11033-016-4079-7
Travo, 2014, Potential of FTIR spectroscopy for analysis of tears for diagnosis purposes, Anal. Bioanal. Chem., 406, 2367, 10.1007/s00216-013-7607-5
Titus, 2017, Minimally invasive screening for colitis using attenuated total internal reflectance fourier transform infrared spectroscopy, J. Biophot., 10, 465, 10.1002/jbio.201600041
Untereiner, 2014, Bile analysis using high-throughput FTIR spectroscopy for the diagnosis of malignant biliary strictures: a pilot study in 57 patients, J. Biophot., 7, 241, 10.1002/jbio.201300166
Roy, 2017, Simultaneous ATR-FTIR based determination of malaria parasitemia, glucose and urea in whole blood dried onto a glass slide, Anal. Chem., 89, 5238, 10.1021/acs.analchem.6b04578
Finlayson, 2019, Is infrared spectroscopy ready for the clinic?, Anal. Chem., 91, 12117, 10.1021/acs.analchem.9b02280
Greener, 2010, Attenuated total reflection Fourier transform infrared spectroscopy for on-chip monitoring of solute concentrations, Lab Chip, 10, 1561, 10.1039/c001889a
Elmer
Dorling, 2013, Highlighting attenuated total reflection Fourier transform infrared spectroscopy for rapid serum analysis, Trends Biotechnol., 31, 327, 10.1016/j.tibtech.2013.03.010
Bruker Optics
Talari, 2017, Advances in Fourier transform infrared (FTIR) spectroscopy of biological tissues, Appl. Spectrosc. Rev., 52, 456, 10.1080/05704928.2016.1230863
Movasaghi, 2008, Fourier transform infrared (FTIR) spectroscopy of biological tissues, Appl. Spectrosc. Rev., 43, 134, 10.1080/05704920701829043
Gray, 2018, Health economic evaluation of a serum-based blood test for brain tumour diagnosis: exploration of two clinical scenarios, BMJ Open, 8, 10.1136/bmjopen-2017-017593
Walsh, 2012, Attenuated total reflectance Fourier-transform infrared spectroscopic imaging for breast histopathology, Vib. Spectrosc., 60, 23, 10.1016/j.vibspec.2012.01.010
Bird, 2012, Infrared spectral histopathology (SHP): a novel diagnostic tool for the accurate classification of lung cancer, Lab. Invest., 92, 1358, 10.1038/labinvest.2012.101
Lasch, 2004, Imaging of colorectal adenocarcinoma using FT-IR microspectroscopy and cluster analysis, Biochim. Biophys. Acta - Mol. Basis Dis., 1688, 176, 10.1016/j.bbadis.2003.12.006
Baker, 2008, FTIR-based spectroscopic analysis in the identification of clinically aggressive prostate cancer, Br. J. Canc., 99, 1859, 10.1038/sj.bjc.6604753
Gazi, 2006, A correlation of FTIR spectra derived from prostate cancer biopsies with gleason grade and tumour stage, Eur. Urol., 50, 750, 10.1016/j.eururo.2006.03.031
Mitchell, 2014, Vibrational spectroscopy of biofluids for disease screening or diagnosis: translation from the laboratory to a clinical setting, J. Biophot., 7, 153, 10.1002/jbio.201400018
Baker, 2016, Developing and understanding biofluid vibrational spectroscopy: a critical review, Chem. Soc. Rev., 45, 1803, 10.1039/C5CS00585J
Shaw, 2007, Infrared spectroscopy of biofluids in clinical chemistry and medical diagnostics, 79
Butler, 2019, Development of high-throughput ATR-FTIR technology for rapid triage of brain cancer, Nat. Commun., 10, 1, 10.1038/s41467-019-12527-5
Butler, 2018, Optimised spectral pre-processing for discrimination of biofluids via ATR-FTIR spectroscopy, Analyst, 143, 6121, 10.1039/C8AN01384E
Tuck, 2009, Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group, J. Proteome Res., 8, 113, 10.1021/pr800545q
Bonnier, 2014, Vibrational spectroscopic analysis of body fluids: avoiding molecular contamination using centrifugal filtration, Anal. Methods., 6, 5155, 10.1039/c4ay00891j
Tirumalai, 2003, Characterization of the low molecular weight human serum proteome, Mol. Cell. Proteomics, 2, 1096, 10.1074/mcp.M300031-MCP200
Petricoin, 2006, The blood peptidome: a higher dimension of information content for cancer biomarker discovery, Nat. Rev. Canc., 6, 961, 10.1038/nrc2011
Infusino, 2013, Serum albumin: accuracy and clinical use, Clin. Chim. Acta, 419, 15, 10.1016/j.cca.2013.01.005
Bonnier, 2016, Screening the low molecular weight fraction of human serum using ATR-IR spectroscopy, J. Biophot., 9, 1085, 10.1002/jbio.201600015
Bonnier, 2017, Ultra-filtration of human serum for improved quantitative analysis of low molecular weight biomarkers using ATR-IR spectroscopy, Analyst, 142, 1285, 10.1039/C6AN01888B
Hands, 2016, Brain tumour differentiation: rapid stratified serum diagnostics via attenuated total reflection Fourier-transform infrared spectroscopy, J. Neuro Oncol., 127, 463, 10.1007/s11060-016-2060-x
Sun, 2013, Detection of lung cancer tissue by attenuated total reflection-Fourier transform infrared spectroscopy - a pilot study of 60 samples, J. Surg. Res., 179, 33, 10.1016/j.jss.2012.08.057
Gajjar, 2013, Fourier-transform infrared spectroscopy coupled with a classification machine for the analysis of blood plasma or serum: a novel diagnostic approach for ovarian cancer, Analyst, 138, 3917, 10.1039/c3an36654e
Bunaciu, 2015, Applications of FT-IR spectrophotometry in cancer diagnostics, Crit. Rev. Anal. Chem., 45, 156, 10.1080/10408347.2014.904733
Bunaciu, 2017, Vibrational spectroscopy in body fluids analysis, Crit. Rev. Anal. Chem., 47, 67, 10.1080/10408347.2016.1209104
Backhaus, 2010, Diagnosis of breast cancer with infrared spectroscopy from serum samples, Vib. Spectrosc., 52, 173, 10.1016/j.vibspec.2010.01.013
Ollesch, 2013, FTIR spectroscopy of biofluids revisited: an automated approach to spectral biomarker identification, Analyst, 138, 4092, 10.1039/c3an00337j
Ollesch, 2014, It's in your blood: spectral biomarker candidates for urinary bladder cancer from automated FTIR spectroscopy, J. Biophot., 7, 210, 10.1002/jbio.201300163
Maitra, 2019, Attenuated total reflection Fourier-transform infrared spectral discrimination in human bodily fluids of oesophageal transformation to adenocarcinoma, Analyst, 10.1039/C9AN01749F
Yap, 2019, A pilot study of prostate cancer-derived extracellular vesicles in urine using IR spectroscopy, Prog. Drug Discov. Biomed. Sci., 2, 16, 10.36877/pddbs.a0000026
Giamougiannis, 2019, EP857 Distinguishing benign vs. cancer states in ovary based on spectrochemical analysis of ascites: a budget omics approach, Int. J. Gynecol. Canc., 29, A466
Hands, 2014, Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) spectral discrimination of brain tumour severity from serum samples, J. Biophot., 7, 189, 10.1002/jbio.201300149
Yong, 2013, Safety of closed brain biopsy: population-based studies weigh in, World Neurosurg., 79, 53, 10.1016/j.wneu.2012.05.016
Cameron, 2019, Developing infrared spectroscopic detection for stratifying brain tumour patients: glioblastoma multiforme: vs. lymphoma, Analyst, 144, 6736, 10.1039/C9AN01731C
Cameron J.M., Manuscript in Preparation.
Martin, 2017, The effect of common anticoagulants in detection and quantification of malaria parasitemia in human red blood cells by ATR-FTIR spectroscopy, Analyst, 142, 1192, 10.1039/C6AN02075E
Lovergne, 2016, Biofluid infrared spectro-diagnostics: pre-analytical considerations for clinical applications, Faraday Discuss, 187, 521, 10.1039/C5FD00184F
Perez-Guaita, 2013, Evaluation of infrared spectroscopy as a screening tool for serum analysis, Microchem. J., 106, 202, 10.1016/j.microc.2012.06.016
Oleszko, 2017, Comparison of FTIR-ATR and Raman spectroscopy in determination of VLDL triglycerides in blood serum with PLS regression, Spectrochim. Acta Part A Mol. Biomol. Spectrosc., 183, 239, 10.1016/j.saa.2017.04.020
Sharma, 2010, Estimation of blood alcohol concentration by horizontal attenuated total reflectance-Fourier transform infrared spectroscopy, Alcohol, 44, 351, 10.1016/j.alcohol.2009.11.004
Lovergne, 2019, Investigating pre‐analytical requirements for serum and plasma based infrared spectro‐diagnostic, J. Biophot., 10.1002/jbio.201900177
Lima, 2015, Segregation of ovarian cancer stage exploiting spectral biomarkers derived from blood plasma or serum analysis: ATR-FTIR spectroscopy coupled with variable selection methods, Biotechnol. Prog., 31, 832, 10.1002/btpr.2084
Roy, 2017, Simultaneous ATR-FTIR based determination of malaria parasitemia, glucose and urea in whole blood dried onto a glass slide, Anal. Chem., 89, 5238, 10.1021/acs.analchem.6b04578
Sala A., Manuscript in Preparation.
Elkins, 2011, Rapid presumptive “fingerprinting” of body fluids and materials by ATR FT-IR spectroscopy, J. Forensic Sci., 56, 1580, 10.1111/j.1556-4029.2011.01870.x
Cameron, 2018, Biofluid spectroscopic disease diagnostics: a review on the processes and spectral impact of drying, J. Biophot., 11, 1, 10.1002/jbio.201700299
Byrne, 2015, Spectropathology for the next generation: quo vadis?, Analyst, 140, 2066, 10.1039/C4AN02036G
Butler, 2019, Shining a light on clinical spectroscopy: translation of diagnostic IR, 2D-IR and Raman spectroscopy towards the clinic, Clin. Spectrosc., 1, 10.1016/j.clispe.2020.100003
Badrick, 2019, Top ten research priorities for detecting cancer early, Lancet Publ. Heal., 4, e551, 10.1016/S2468-2667(19)30185-9
Kendall, 2009, Vibrational spectroscopy: a clinical tool for cancer diagnostics, Analyst, 134, 1029, 10.1039/b822130h
Perez-Guaita, 2018, Parasites under the spotlight: applications of vibrational spectroscopy to malaria research, Chem. Rev., 118, 5330, 10.1021/acs.chemrev.7b00661
Kalayeh, 1983, Predicting the required number of training samples, IEEE Trans. Pattern Anal. Mach. Intell. PAMI-, 5, 664, 10.1109/TPAMI.1983.4767459
Beleites, 2013, Sample size planning for classification models, Anal. Chim. Acta, 760, 25, 10.1016/j.aca.2012.11.007