Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960
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Zhu, T. F. et al. An African HIV-1 sequence from 1959 and implications for the origin of the epidemic. Nature 391, 594–597 (1998)
Gilbert, M. T. P. et al. The isolation of nucleic acids from fixed, paraffin-embedded tissues — which methods are useful when? PLoS ONE 2, e537 (2007)
Worobey, M. Phylogenetic evidence against evolutionary stasis and natural abiotic reservoirs of influenza A virus. J. Virol. 82, 3769–3774 (2008)
Huelsenbeck, J. P. & Ronquist, F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754–755 (2001)
Worobey, M. A novel approach to detecting and measuring recombination: insights into evolution in viruses, bacteria, and mitochondria. Mol. Biol. Evol. 18, 1425–1434 (2001)
Gilbert, M. T. P. et al. The emergence of HIV-1 in the Americas and beyond. Proc. Natl Acad. Sci. USA 104, 18566–18570 (2007)
Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214 (2007)
Drummond, A. J., Ho, S. Y. W., Phillips, M. J. & Rambaut, A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4, e88 (2006)
Salemi, M., de Oliveira, T., Ciccozzi, M., Rezza, G. & Goodenow, M. M. High-resolution molecular epidemiology and evolutionary history of HIV-1 subtypes in Albania. PLoS ONE 3, e1390 (2008)
Suchard, M. A., Weiss, R. E. & Sinsheimer, J. S. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 18, 1001–1013 (2001)
Drummond, A. J., Rambaut, A., Shapiro, B. & Pybus, O. G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22, 1185–1192 (2005)
Sharp, P. M. et al. The origins of acquired immune deficiency syndrome viruses: where and when? Phil. Trans. R. Soc. Lond. B 356, 867–876 (2001)
Salemi, M. et al. Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes using a new method to uncover clock-like molecular evolution. FASEB J. 15, 276–278 (2001)
Yusim, K. et al. Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Phil. Trans. R. Soc. Lond. B 356, 855–866 (2001)
Vidal, N. et al. Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa. J. Virol. 74, 10498–10507 (2000)
Rambaut, A., Robertson, D. L., Pybus, O. G., Peeters, M. & Holmes, E. C. Human immunodeficiency virus phylogeny and the origin of HIV-1. Nature 410, 1047–1048 (2001)
Keele, B. F. et al. Chimpanzee reservoirs of pandemic and nonpandemic HIV-1. Science 313, 523–526 (2006)
Worobey, M. in Global HIV/AIDS Medicine (eds Volberding, P. A., Sande, M. A., Lange, J. & Greene, W. C.) 13–21 (Saunders Elsevier, 2008)
Hahn, B. H., Shaw, G. M., De Cock, K. M. & Sharp, P. M. AIDS as a zoonosis: scientific and public health implications. Science 287, 607–614 (2000)
Chitnis, A., Rawls, D. & Moore, J. Origin of HIV type 1 in colonial French Equatorial Africa? AIDS Res. Hum. Retrov. 16, 5–8 (2000)
Taubenberger, J. K. et al. Characterization of the 1918 influenza virus polymerase genes. Nature 437, 889–893 (2005)
Tumpey, T. M. et al. Characterization of the reconstructed 1918 Spanish Influenza pandemic virus. Science 310, 77–80 (2005)
Leitner, T. et al. HIV Sequence Compendium 〈 http://www.hiv.lanl.gov 〉 (Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, 2005)