Structure and Chromosomal Distribution of Human Mitochondrial Pseudogenes

Genomics - Tập 80 - Trang 71-77 - 2002
Yves Tourmen1, Olivier Baris1, Philippe Dessen2, Caroline Jacques1, Yves Malthièry1, Pascal Reynier1
1INSERM EMI-U 00-18, Laboratoire de Biochimie et Biologie Moléculaire, CHU d'Angers, Angers, F-49033, France
2Laboratoire de Génétique Oncologique, UMR 1599 CNRS, Institut Gustave Roussy, Villejuif, F-94805, France

Tài liệu tham khảo

Gray, 1989, Origin and evolution of mitochondrial DNA, Annu. Rev. Cell. Biol., 5, 25, 10.1146/annurev.cb.05.110189.000325 Du Buy, 1967, Hybridization between the nuclear and kinetoplast DNAs of Leishmania enriettii and between nuclear and mitochondrial DNA's of mouse liver, Proc. Natl. Acad. Sci. USA, 57, 790, 10.1073/pnas.57.3.790 Bensasson, 2001, Mitochondrial pseudogenes: evolution's misplaced witnesses, Trends Ecol. Evol., 16, 314, 10.1016/S0169-5347(01)02151-6 Lopez, 1994, Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat, J. Mol. Evol., 39, 174, 10.1007/BF00163806 Venter, 2001, The sequence of the human genome, Science, 291, 1304, 10.1126/science.1058040 Zhang, 1996, Nuclear integrations: challenges for mitochondrial DNA markers, Trends Ecol. Evol., 11, 247, 10.1016/0169-5347(96)10031-8 Bensasson, 2000, Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes, Mol. Biol. Evol., 17, 406, 10.1093/oxfordjournals.molbev.a026320 Tsuzuki, 1983, Presence of mitochondrial-DNA-like sequences in the human nuclear DNA, Gene, 25, 223, 10.1016/0378-1119(83)90226-3 Zischler, 1995, A nuclear “fossil” of the mitochondrial D-loop and the origin of modern humans, Nature, 378, 485, 10.1038/378489a0 Herrnstadt, C., et al.1999. A novel mitochondrial DNA-like sequence in the human nuclear genome. Genomics60: 67–77, Davis, 1997, Mutations in mitochondrial cytochrome c oxidase genes segregate with late-onset Alzheimer disease, Proc. Natl. Acad. Sci. USA, 94, 4526, 10.1073/pnas.94.9.4526 Wallace, 1997, Ancient mtDNA sequences in the human nuclear genome: a potential source of errors in identifying pathogenic mutations, Proc. Natl. Acad. Sci. USA, 94, 14900, 10.1073/pnas.94.26.14900 Davis, J. N., and Parker, W. D. Jr., 1998. Evidence that two reports of mtDNA cytochrome c oxidase “mutations” in Alzheimer's disease are based on nDNA pseudogenes of recent evolutionary origin. Biochem. Biophys. Res. Commun.244: 877–883, Parfait, B., Rustin, P., Munnich, A., and Rotig, A.1998. Co-amplification of nuclear pseudogenes and assessment of heteroplasmy of mitochondrial DNA mutations. Biochem. Biophys. Res. Commun.247: 57–59, Lander, 2001, Initial sequencing and analysis of the human genome, Nature, 409, 860, 10.1038/35057062 Mourier, 2001, The human genome project reveals a continuous transfer of large mitochondrial fragments to the nucleus, Mol. Biol. Evol., 18, 1833, 10.1093/oxfordjournals.molbev.a003971 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Jareborg, 1999, Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs, Genome Res., 9, 815, 10.1101/gr.9.9.815 Huang, 1991, A time-efficient, linear-space local similarity algorithm, Adv. Appl. Math., 12, 337, 10.1016/0196-8858(91)90017-D Thompson, 1994, CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Galtier, 1996, SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny, Comput. Appl. Biosci., 12, 543 King, 1989, Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation, Science, 246, 500, 10.1126/science.2814477