Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue

Phytochemistry - Tập 79 - Trang 57-66 - 2012
Grisel Ponciano1, Colleen M. McMahan1, Wenshuang Xie1, Gerard R. Lazo1, Terry A. Coffelt2, Jillian Collins-Silva3, Aise Nural-Taban3, Martin Gollery3, David K. Shintani3, Maureen C. Whalen1
1USDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA
2USDA-ARS, U.S. Arid-Land Agricultural Research Center, 21881 North Cardon Lane, Maricopa, AZ 85239, USA
3University of Nevada, Department of Biochemistry and Molecular Biology, Mailstop 330, Reno, NV 89557, USA

Tài liệu tham khảo

Alcazar, 2010, Polyamines: molecules with regulatory functions in plant abiotic stress tolerance, Planta, 231, 1237, 10.1007/s00425-010-1130-0 Aoki, 2005, Destination-selective long-distance movement of phloem proteins, Plant Cell, 17, 1801, 10.1105/tpc.105.031419 Asawatreratanakul, 2003, Molecular cloning, expression and characterization of cDNA encoding cis-prenyltransferases from Hevea brasiliensis. A key factor participating in natural rubber biosynthesis, Eur. J. Biochem., 270, 4671, 10.1046/j.1432-1033.2003.03863.x Ashburner, 2000, Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat. Genet., 25, 25, 10.1038/75556 Bach, 1986, Hydroxymethylglutaryl-CoA reductase, a key enzyme in phytosterol synthesis?, Lipids, 21, 82, 10.1007/BF02534307 Backhaus, 1991, Purification and characterization of an abundant rubber particle protein from guayule, Phytochemistry, 30, 2493, 10.1016/0031-9422(91)85088-H Balbuena, 2011, Proteome analysis of cold acclimation in sunflower, J. Proteome Res., 10, 2330, 10.1021/pr101137q Benedict, 2008, The physiology and biochemical responses of guayule to the low temperature of the Chihuahuan Desert in the biosynthesis of rubber, Ind. Crops Prod., 27, 225, 10.1016/j.indcrop.2007.09.003 Benedict, 2010, The formation of rubber-producing cortical parenchyma cells in guayule (Parthenium argentatum Gray) by low temperature, Ind. Crops Prod., 31, 516, 10.1016/j.indcrop.2010.02.002 Berkowitz, 2008, Characterization of TCTP, the translationally controlled tumor protein, from Arabidopsis thaliana, Plant Cell, 20, 3430, 10.1105/tpc.108.061010 Bonner, 1943, Effects of temperature on rubber accumulation by the guayule plant, Bot. Gaz., 105, 233, 10.1086/335212 Brioudes, 2010, Translationally controlled tumor protein is a conserved mitotic growth integrator in animals and plants, Proc. Natl. Acad. Sci. USA, 107, 16384, 10.1073/pnas.1007926107 Castillon, 1999, Regulation of initiation and polymer molecular weight of cis-1,4-polyisoprene synthesized in vitro by particles isolated from Parthenium argentatum (Gray), Phytochemistry, 51, 43, 10.1016/S0031-9422(98)00719-5 Chappell, 1995, Biochemistry and molecular biology of the isoprenoid biosynthetic pathway in plants, Annu. Rev. Plant Physiol. Plant Mol. Biol., 46, 521, 10.1146/annurev.pp.46.060195.002513 Chow, 2007, Insights into rubber biosynthesis from transcriptome analysis of Hevea brasiliensis latex, Exp. Bot., 58, 2429, 10.1093/jxb/erm093 Chye, 1992, Three genes encode 3-hydroxy-3-methylglutaryl-coenzyme A reductase in Hevea brasiliensis: hmgs1 and hmgs3 are differentially expressed, Plant Mol. Biol., 19, 473, 10.1007/BF00023395 Cornish, 2001, Similarities and differences in rubber biochemistry among plant species, Phytochemistry, 57, 1123, 10.1016/S0031-9422(01)00097-8 Cornish, 1990, Rubber transferase activity in rubber particles of guayule, Phytochemistry, 29, 3809, 10.1016/0031-9422(90)85337-F Cornish, 2003, Induction of rubber transferase activity in guayule (Parthenium argentatum Gray) by low temperatures, Ind. Crops Prod., 17, 83, 10.1016/S0926-6690(02)00079-1 Cornish, 2008, Production and properties of Yulex – the natural solution to latex allergy, Rubber Chem. Technol., 81, 709, 10.5254/1.3548227 Dai, 2011, Cloning and characterization of a novel 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from Salvia miltiorrhiza involved in diterpenoid tashinone accumulation, J. Plant Physiol., 168, 148, 10.1016/j.jplph.2010.06.008 Dellagi, 2000, A potato gene, erg-1, is rapidly induced by Erwinia carotovora ssp. atroseptica, Phytophthora infestans, ethylene and salicylic acid, J. Plant Physiol., 157, 201, 10.1016/S0176-1617(00)80191-1 Demel, 1998, Fructans interact strongly with model membranes, Biochim. Biophys. Acta, 1375, 36, 10.1016/S0005-2736(98)00138-2 Downes, 1985, Effect of environmental conditions on growth and rubber production of guayule (Parthenium argentatum), Aust. J. Agric. Res., 36, 285, 10.1071/AR9850285 Ermolayev, 2003, Comparison of Al-induced gene expression in sensitive and tolerant soybean cultivars, J. Exp. Bot., 54, 2745, 10.1093/jxb/erg302 Ewing, 1998, Base-calling of automated sequencer traces using Phred: I. Accuracy assessment, Genome Res., 8, 175, 10.1101/gr.8.3.175 Gomez, 1982 Goss, 1984, cis-Polyisoprene synthesis in guayule plants (Parthenium argentatum Gray) exposed to low, nonfreezing temperatures, Plant Physiol., 74, 534, 10.1104/pp.74.3.534 Hamilton, 2010, Immunogenicity studies of guayule and guayule latex in occupationally exposed workers, Ind. Crops Prod., 31, 197, 10.1016/j.indcrop.2009.09.012 Han, 2000, Genes expressed in the latex of Hevea brasiliensis, Tree Physiol., 20, 503, 10.1093/treephys/20.8.503 Hughes, 2006, Allene oxide synthase from Arabidopsis thaliana (CYP74A1) exhibits dual specificity that is regulated by monomer–micelle association, FEBS Lett., 580, 4188, 10.1016/j.febslet.2006.06.075 Hughes, 2009, Plant cytochrome CYP74 family: biochemical features, endocellular localisation, activation mechanism in plant defense and improvements for industrial applications, ChemBioChem, 10, 1122, 10.1002/cbic.200800633 Jasso de Rodriguez, 2006, Mexican high rubber producing guayule shrubs: a potential source for commercial development, J. Polym. Environ., 14, 37, 10.1007/s10924-005-8705-z Ji, 1993, Seasonal variation in rubber biosynthesis, 3-hydroxy-3-methylglutaryl-coenzyme A reductase, and rubber transferase activities in Parthenium argentatum in the Chihuahuan Desert, Plant Physiol., 103, 535, 10.1104/pp.103.2.535 Kelly, 1994, Carbohydrate production in guayule, S. Afr. J. Bot., 60, 193, 10.1016/S0254-6299(16)30612-3 Kharel, 2003, Molecular analysis of cis-prenyl chain elongating enzymes, Nat. Prod. Rep., 20, 111, 10.1039/b108934j Kharel, 2006, Manipulation of prenyl chain length determination mechanism of cis-prenyltransferases, FEBS, 273, 647, 10.1111/j.1742-4658.2005.05097.x Kim, 2004, A novel cDNA from Parthenium argentatum Gray enhances the rubber biosynthetic activity in vitro, J. Exp. Bot., 55, 377, 10.1093/jxb/erh039 Kim, 2010, Constitutive expression of CaSRP1, a hot pepper small rubber particle protein homolog, resulted in fast growth and improved drought tolerance in transgenic Arabidopsis plants, Planta, 232, 71, 10.1007/s00425-010-1149-2 Ko, 2003, Transcriptome analysis reveal novel features of the molecular events occurring in the laticifers of Hevea brasiliensis (para rubber tree), Plant Mol. Biol., 53, 479, 10.1023/B:PLAN.0000019119.66643.5d Lynen, 1960, Biological path to natural rubber, Angew. Chem., 72 Madhavan, 1989, Stimulation of isopentenyl pyrophosphate incorporation into polyisoprene in extracts from guayule plants (Parthenium argentatum Gray) by low temperature and 2-(3,4-dichlorophenoxy) triethylamine, Plant Physiol., 89, 506, 10.1104/pp.89.2.506 Marrs, 1996, The functions and regulations of glutathione S-transferases in plants, Annu. Rev. Plant Physiol. Plant Mol. Biol., 47, 127, 10.1146/annurev.arplant.47.1.127 Mau, 2000, Multiwell filtration system results in rapid high-throughput rubber transferase microassay, Phytochem. Anal., 11, 356, 10.1002/1099-1565(200011/12)11:6<356::AID-PCA545>3.0.CO;2-A Mau, 2003, Protein farnesyltransferase inhibitors interfere with farnesyl diphosphate binding by rubber transferase, Eur. J. Biochem., 270, 3939, 10.1046/j.1432-1033.2003.03775.x Maurel, 2008, Plant aquaporins: membrane channels with multiple integrated functions, Annu. Rev. Plant Biol., 59, 595, 10.1146/annurev.arplant.59.032607.092734 Mingeot, 2009, Characterisation of two cold induced dehydrin genes from Cichorium intybus L., Mol. Biol. Rep., 36, 1995, 10.1007/s11033-008-9410-5 Nagegowda, 2005, Brassica junces HMG-CoA synthase: localization of mRNA and protein, Planta, 221, 844, 10.1007/s00425-005-1497-5 Pan, 1995, The major protein of guayule rubber particles is a cytochrome P450. Characterization based on cDNA cloning and spectroscopic analysis of the solubilized enzyme and its reaction products, J. Biol. Chem., 270, 8487, 10.1074/jbc.270.15.8487 Pan, 1996, Cloning, characterization, and heterologous expression of cDNAs for farnesyl diphosphate synthase from the guayule rubber plant reveals that this prenyltransferase occurs in rubber particles, Arch. Biochem. Biophys., 332, 196, 10.1006/abbi.1996.0333 Pfaffl, 2001, A new mathematical model for relative quantification in real-time RT-PCR, Nucleic Acids Res., 29, 2002, 10.1093/nar/29.9.e45 Pilon-Smits, 1995, Improved performance of transgenic fructan-accumulating tobacco under drought stress, Plant Physiol., 107, 125, 10.1104/pp.107.1.125 Polhamus, 1962, Rubber – botany, production, and utilization, World Crop Ser., 43 Ritsema, 2003, Fructans: beneficial for plants and humans, Curr. Opin. Plant Biol., 6, 223, 10.1016/S1369-5266(03)00034-7 Salvucci, 2010, Photosynthesis and assimilate partitioning between carbohydrates and isoprenoid products in vegetatively active and dormant guayule: physiological and environmental constraints on rubber accumulation in a semiarid shrub, Physiol. Plant., 140, 368, 10.1111/j.1399-3054.2010.01409.x Sando, 2008, Cloning and characterization of the 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway genes of natural-rubber producing plant, Hevea brasiliensis, Biosci. Biotechnol. Biochem., 72, 2903, 10.1271/bbb.80387 Sando, 2009, Histochemical study of detailed laticifer structure and rubber biosynthesis-related protein localization in Hevea brasiliensis using spectral confocal laser scanning microscopy, Planta, 230, 215, 10.1007/s00425-009-0936-0 Schmidt, 2010, Molecular cloning and characterization of rubber biosynthetic genes from Taraxacum koksaghyz, Plant Mol. Biol. Rep., 28, 277, 10.1007/s11105-009-0145-9 Schmidt, 2010, Characterization of rubber particles and rubber chain elongation in Taraxacum koksaghyz, BMC Biochem., 11, 1, 10.1186/1471-2091-11-11 Siler, 1993, A protein from Ficus elastica rubber particles is related to proteins from Hevea brasiliensis and Parthenium argentatum, Phytochemistry, 32, 1097, 10.1016/S0031-9422(00)95072-6 Siler, 1994, Hypoallergenicity of guayule rubber particle proteins compared to Hevea latex proteins, Ind. Crops Prod., 2, 307, 10.1016/0926-6690(94)90122-8 Siler, 1994, Identification of Parthenium argentatum rubber particle proteins immunoprecipitated by an antibody that specifically inhibits rubber transferase activity, Phytochemistry, 36, 623, 10.1016/S0031-9422(00)89786-1 Siler, 1996, Absence of cross-reactivity of igE antibodies from subjects allergic to Hevea brasiliensis latex with a new source of natural rubber latex from guayule (Parthenium argentatum), Allergy Clin. Immunol., 98, 895, 10.1016/S0091-6749(96)80005-4 Siler, 1997, Composition of rubber particles of Hevea brasiliensis, Parthenium argentatum, Ficus elastica, and Euphorbia lactiflua indicates unconventional surface structure, Plant Physiol. Biochem., 35, 881 Singh, 2003, The micromorphology and protein characterization of rubber particles in Ficus carica, Ficus benghalensis and Hevea brasiliensis, J. Exp. Bot., 54, 985, 10.1093/jxb/erg107 Sirinupong, 2005, Molecular cloning of a new cDNA and expression of 3-hydroxy-3-methylglutaryl-CoA synthase gene from Hevea brasiliensis, Planta, 221, 502, 10.1007/s00425-004-1463-7 Song, 1991, Purification of an allene oxide synthase and identification of the enzyme as a cytochrome P-450, Science, 253, 781, 10.1126/science.1876834 Sundar, 2000, Low night temperature-induced changes in photosynthesis and rubber accumulation in guayule (Parthenium argentatum Gray), Photosynthetica, 38, 421, 10.1023/A:1010990024506 Suwanmanee, 2004, Regulation of the expression of 3-hydroxy-3-methylglutaryl-CoA synthase gene in Hevea brasiliensis (B.H.K.) Mull. Arg., Plant Sci., 166, 531, 10.1016/j.plantsci.2003.10.026 Tanaka, 1996, Initiation of rubber biosynthesis in Hevea brasiliensis: characterization of initiating species by structural analysis, Phytochemistry, 41, 1501, 10.1016/0031-9422(95)00817-9 Tanaka, 2001, Structural characterization of natural polyisoprenes: solve the mystery of natural rubber based on structural study, Rubber Chem. Technol., 74, 355, 10.5254/1.3547643 Tungngoen, 2010, Hormonal treatment of the bark of rubber trees (Hevea brasiliensis) increases latex yield through latex dilution in relation with the differential expression of two aquaporin genes, J. Plant Physiol., 168, 253, 10.1016/j.jplph.2010.06.009 van Beilen, 2007, Establishment of new crops for the production of natural rubber, Trends Biotechnol., 25, 522, 10.1016/j.tibtech.2007.08.009 Veatch, 2005, Growth, rubber, and resin evaluation of two-year old transgenic guayule, Ind. Crops Prod., 22, 65, 10.1016/j.indcrop.2004.06.007 Veatch-Bolhm, 2007, Night temperature, rubber production, and carbon exchange in guayule, Ind. Crops Prod., 25, 34, 10.1016/j.indcrop.2006.06.019 Venkatachalam, 2007, Identification of expression profiles of tapping panes dryness (TDP) associated genes from the latex rubber tree (Hevea brasiliensis Muell. Arg.), Planta, 226, 499, 10.1007/s00425-007-0500-8 Vereyken, 2001, Fructans insert between the headgroups of phospholipids, Biochim. Biophys. Acta, 1510, 307, 10.1016/S0005-2736(00)00363-1 Whitworth, J.W., Whitehead, E.E., 1991. Guayule natural rubber: a technical publication with emphasis on recent findings. Guayule Administrative Management Committee and USDA Cooperative State Research Service. Xie, 2008, Initiation of rubber biosynthesis: in vivo comparisons of benzophenone-modified diphosphate analogues in three rubber-producing species, Phytochemistry, 69, 2539, 10.1016/j.phytochem.2008.07.011