Detection and phylogenetic analysis of Coccidioides posadasii in Arizona soil samples

Abuodeh, 1999, Resistance to Coccidioides immitis in mice after immunization with recombinant protein or a DNA vaccine of a proline-rich antigen, Infection and Immunity, 67, 2935, 10.1128/IAI.67.6.2935-2940.1999 Ajello, 1971, Coccidioidomycosis and histoplasmosis. A review of their epidemiology and geographical distribution, Mycopathologia et Mycologia Applicata, 45, 221, 10.1007/BF02051969 Ashburn, 1942, Spontaneous coccidioidal granuloma in the lungs of wild rodents, Archives of Pathology, 34, 791 Burt, 1996, Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis, Proceedings of the National Academy of Sciences of the United States of America, 93, 770, 10.1073/pnas.93.2.770 Burt, 1997, Molecular markers reveal differentiation among isolates of Coccidioides immitis from California, Arizona and Texas, Molecular Ecology, 6, 781, 10.1046/j.1365-294X.1997.00245.x Cochran, 2003 Cole, 1985, Arthroconidium–spherule–endospore transformation in Coccidioides immitis, 281 Comrie, 2005, Climate factors influencing coccidioidomycosis seasonality and outbreaks, Environmental Health Perspectives, 113, 688, 10.1289/ehp.7786 Comrie, 2007, Assessment of climate-coccidioidomycosis model – Model sensitivity for assessing climatologic effects on the risk of acquiring Coccidioidomycosis, Annals of the New York Academy of Sciences, 1111, 83, 10.1196/annals.1406.024 Converse, 1966, Experimental epidemiology of coccidioidomycosis, Bacteriological Reviews, 30, 678, 10.1128/MMBR.30.3.678-695.1966 Cox, 2004, Coccidioidomycosis: host response and vaccine development, Clinical Microbiology Reviews, 17, 804, 10.1128/CMR.17.4.804-839.2004 Davis, 1942, An epidemic of coccidioidal infection (Coccidioidomycosis), Journal of the American Medical Association, 118, 1182, 10.1001/jama.1942.02830140012004 Egeberg, 1964, Distribution of coccidioidomycosis, Annals of Internal Medicine, 61, 807, 10.7326/0003-4819-61-4-807_2 Egeberg, 1956, Coccidioides immitis in the soil of the southern San Joaquin Valley, American Journal of the Medical Sciences, 231, 151, 10.1097/00000441-195602000-00005 Elconin, 1964, Significance of soil salinity on ecology of Coccidioides immitis, Journal of Bacteriology, 87, 500, 10.1128/JB.87.3.500-503.1964 Elconin, 1957, Growth patterns of Coccidioides immitis in the soil of an endemic area Emmons, 1942, Isolation of Coccidioides from soil and rodents, Public Health Reports, 57, 109, 10.2307/4583988 Evanno, 2005, Detecting the number of clusters of individuals using the software structure: a simulation study, Molecular Ecology, 14, 2611, 10.1111/j.1365-294X.2005.02553.x Fisher, 2001, Biogeographic range expansion into South America by Coccidioides immitis mirrors New World patterns of human migration, Proceedings of the National Academy of Sciences of the United States of America, 98, 4558, 10.1073/pnas.071406098 Fisher, 2000, A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis, Molecular Biology and Evolution, 17, 1164, 10.1093/oxfordjournals.molbev.a026399 Fisher, 2000, Pathogenic clones versus environmentally driven population increase: analysis of an epidemic of the human fungal pathogen Coccidioides immitis, Journal of Clinical Microbiology, 38, 807, 10.1128/JCM.38.2.807-813.2000 Fisher, 2002, Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis, Mycologia, 94, 73, 10.2307/3761847 Fisher, 1999, Primers for genotyping single nucleotide polymorphisms and microsatellites in the pathogenic fungus Coccidioides immitis, Molecular Ecology, 8, 1082, 10.1046/j.1365-294X.1999.00655_5.x Flynn, 1979, An unusual outbreak of windborne coccidioidomycosis, The New England Journal of Medicine, 301, 358, 10.1056/NEJM197908163010705 Friedman, 1955, The assay of virulence of Coccidioides in white mice, Journal of Infectious Diseases, 97, 311, 10.1093/infdis/97.3.311 Friedman, 1956, The virulence and infectivity of 27 strains of Coccidioides immitis, American Journal of Hygiene, 64, 198 Galgiani, 1999, Coccidioidomycosis: a regional disease of national importance – rethinking approaches for control, Annals of Internal Medicine, 130, 293, 10.7326/0003-4819-130-4-199902160-00015 Greene, 2000, Soil isolation and molecular identification of Coccidioides immitis, Mycologia, 92, 406, 10.2307/3761498 Hector, 2011, The public health impact of coccidioidomycosis in Arizona and California, International Journal of Environmental Research and Public Health, 8, 1150, 10.3390/ijerph8041150 Hubisz, 2009, Inferring weak population structure with the assistance of sample group information, Molecular Ecology Resources, 9, 1322, 10.1111/j.1755-0998.2009.02591.x Jewell, 2008, Genetic diversity among clinical Coccidioides spp. isolates in Arizona, Medical Mycology, 46, 449, 10.1080/13693780801961337 Kellner, 2005, Coccidioides posadasii contains a single 1,3-ß-glucan synthase gene that appears to be essential for growth, Eukaryotic Cell, 4, 111, 10.1128/EC.4.1.111-120.2005 Kirkland, 1996, Coccidioidomycosis: a reemerging infectious disease, Emerging Infectious Diseases, 2, 192, 10.3201/eid0203.960305 Kirkland, 1983, Inbred mouse strains differ in resistance to lethal Coccidioides immitis infection, Infection and Immunity, 40, 912, 10.1128/IAI.40.3.912-916.1983 Klute, 1982 Komatsu, 2003, Increase in coccidioidomycosis – Arizona, 1998–2001, Journal of the American Medical Association, 289, 1500, 10.1001/jama.289.12.1500 Kreader, 1996, Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein, Applied and Environmental Microbiology, 62, 1102, 10.1128/AEM.62.3.1102-1106.1996 de Macêdo, 2011, Molecular identification of Coccidioides spp. in soil samples from Brazil, BMC Microbiology, 11, 108, 10.1186/1471-2180-11-108 Maddy, 1958, The geographic distribution of Coccidioides immitis and possible ecologic implications, Arizona Medicine, 15, 178 Maddy, 1959, A study of a site in Arizona where a dog apparently acquired a Coccidioides immitis infection, American Journal of Veterinary Research, 20, 642 Maddy, 1965, Observations on Coccidioides immitis found growing naturally in soil, Arizona Medicine, 22, 281 Mandel, 2007, Genomic and population analyses of the mating type loci in Coccidioides species reveal evidence for sexual reproduction and gene acquisition, Eukaryotic Cell, 6, 1189, 10.1128/EC.00117-07 Ochoa, 1967, Coccidioidomycosis in Mexico Pappagianis, 1988, Epidemiology of coccidioidomycosis, Current Topics in Medical Mycology, 2, 199, 10.1007/978-1-4612-3730-3_6 Pappagianis, 1994, Marked increase in cases of coccidioidomycosis in California – 1991, 1992, and 1993, Clinical Infectious Diseases, 19, S14, 10.1093/clinids/19.Supplement_1.14 Pappagianis, 1994, Emerging infectious diseases – coccidioidomycosis following the Northridge earthquake – California, 1994, Archives of Dermatology, 130, 555, 10.1001/archderm.1994.01690050017002 Pappagianis, 1956, Relationship of the in vivo form of Coccidioides immitis to virulence, The Journal of Infectious Diseases, 98, 312, 10.1093/infdis/98.3.312 Peakall, 2006, GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research, Molecular Ecology Notes, 6, 288, 10.1111/j.1471-8286.2005.01155.x Reed, 1965, Seasonal incidence of canine coccidioidomycosis, Journal of the American Veterinary Medical Association, 147, 1670 Schneider, 1997, A coccidioidomycosis outbreak following the Northridge, Calif, earthquake, Journal of the American Medical Association, 277, 904, 10.1001/jama.1997.03540350054033 Shubitz, 2008, Vaccine-induced cellular immune responses differ from innate responses in susceptible and resistant strains of mice infected with Coccidioides posadasii, Infection and Immunity, 76, 5553, 10.1128/IAI.00885-08 Shubitz, 2002, Protection of mice against Coccidioides immitis intranasal infection by vaccination with recombinant antigen 2/PRA, Infection and Immunity, 70, 3287, 10.1128/IAI.70.6.3287-3289.2002 Smith CD, 1972. Studies on the ecology of Coccidioides immitis. Ph.D. dissertation, University of North Carolina, Chapel Hill. Sparks, 1996 Stewart, 1932, Isolation of Coccidioides immitis (Stiles) from the soil, Proceedings of the Society for Experimental Biology and Medicine, 29, 937, 10.3181/00379727-29-6159 Sunenshine, 2007, Public health surveillance for coccidioidomycosis in Arizona, Annals of the New York Academy of Sciences, 1111, 96, 10.1196/annals.1406.045 Swatek, 1970, Isolation and identification of Coccidioides immitis from natural sources, Mycopathologia et Mycologia Applicata, 41, 155, 10.1007/BF02051491 Swatek, 1967, Coccidioides immitis in California White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315