Dead-box proteins: a family affair—active and passive players in RNP-remodeling
Tóm tắt
Từ khóa
Tài liệu tham khảo
Watson, 1953, Genetical implications of the structure of deoxyribonucleic acid, Nature, 171, 964, 10.1038/171964b0
Shiratori, 1999, Systematic identification, classification, and characterization of the open-reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis, YEAST, 15, 219, 10.1002/(SICI)1097-0061(199902)15:3<219::AID-YEA349>3.0.CO;2-3
Cordin, 2006, The DEAD-box protein family of RNA helicases, Gene, 367, 17, 10.1016/j.gene.2005.10.019
Fuller-Pace, 2006, DExD/H-box RNA helicases: multifunctional proteins with important roles in transcriptional regulation, Nucleic Acids Res, 10.1093/nar/gkl460
Jankowsky, 2006, Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases, Nucleic Acids Res, 10.1093/nar/gkl410
Rocak, 2004, DEAD-box proteins: the driving forces behind RNA metabolism, Nature Rev. Mol. Cell Biol, 5, 232, 10.1038/nrm1335
Rogers, 2002, eIF4A: the godfather of the DEAD box helicases, Prog. Nucleic Acid Res. Mol. Biol, 72, 307, 10.1016/S0079-6603(02)72073-4
Tanner, 2001, DExD/H box RNA helicases: from generic motors to specific dissociation functions, Mol. Cell, 8, 251, 10.1016/S1097-2765(01)00329-X
Weston, 2006, Xp54 and related (DDX6-like) RNA helicases: roles in messenger RNP assembly, translation regulation and RNA degradation, Nucleic Acids Res, 34, 3082, 10.1093/nar/gkl409
Ray, 1985, ATP-dependent unwinding of messenger RNA structure by eukaryotic initiation factors, J. Biol. Chem, 260, 7651, 10.1016/S0021-9258(17)39658-8
Gorbalenya, 1989, Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes, Nucleic Acids Res, 17, 4713, 10.1093/nar/17.12.4713
Tanner, 2003, The Q motif. A newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis, Mol. Cell, 11, 127, 10.1016/S1097-2765(03)00006-6
Blum, 1992, ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae, Proc. Natl Acad. Sci. USA, 89, 7664, 10.1073/pnas.89.16.7664
Pause, 1994, Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4A in cap-dependent and cap-independent initiation of translation, EMBO J, 13, 1205, 10.1002/j.1460-2075.1994.tb06370.x
Pause, 1992, Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A, EMBO J, 11, 2643, 10.1002/j.1460-2075.1992.tb05330.x
Svitkin, 2001, The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5′ secondary structure, RNA, 7, 382, 10.1017/S135583820100108X
de la Cruz, 1999, Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families, Trends Biochem. Sci, 24, 192, 10.1016/S0968-0004(99)01376-6
Linder, 2000, A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae, YEAST, 16, 507, 10.1002/(SICI)1097-0061(200004)16:6<507::AID-YEA549>3.0.CO;2-N
Jamieson, 1991, A suppressor of yeast spp81/ded1 mutations encodes a very similar putative ATP-dependent RNA helicase, Mol. Microbiol, 5, 805, 10.1111/j.1365-2958.1991.tb00753.x
Dietrich, 2004, The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome, Science, 304, 304, 10.1126/science.1095781
Linder, 2003, Yeast RNA helicases of the DEAD-box family involved in translation initiation, Biol. Cell, 95, 157, 10.1016/S0248-4900(03)00032-7
Tseng-Rogenski, 2003, Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes, Nucleic Acids Res, 31, 4995, 10.1093/nar/gkg712
Johnstone, 2005, Belle is a Drosophila DEAD-box protein required for viability and in the germ line, Dev. Biol, 277, 92, 10.1016/j.ydbio.2004.09.009
Kitajima, 1994, A novel human homologue of a dead-box RNA helicase family, Biochem. Biophys. Res. Commun, 199, 748, 10.1006/bbrc.1994.1292
Schmidt, 2002, A novel mitochondrial DEAD box protein (Mrh4) required for maintenance of mtDNA in Saccharomyces cerevisiae, FEM Yeast Res, 2, 267
Séraphin, 1989, Mitochondrial splicing requires a protein from a novel helicase family, Nature, 337, 84, 10.1038/337084a0
Valgardsdottir, 2001, Cloning and characterization of MDDX28, a putative dead-box helicase with mitochondrial and nuclear localization, J. Biol. Chem, 276, 32056, 10.1074/jbc.M011629200
Valgardsdottir, 2003, Transport signals and transcription-dependent nuclear localization of the putative DEAD-box helicase MDDX28, J. Biol. Chem, 278, 21146, 10.1074/jbc.M300888200
Weaver, 1997, Dbp3p, a putative RNA helicase in Saccharomyces cerevisiae, is required for efficient pre-rRNA processing predominantly at site A3, Mol. Cell. Biol, 17, 1354, 10.1128/MCB.17.3.1354
Tanaka, 2005, Characterization of the NTPase, RNA-binding, and RNA helicase activities of the DEAH-box splicing factor Prp22, Biochemistry, 44, 9795, 10.1021/bi050407m
Cordin, 2006, The DEAD-box protein family of RNA helicases, Gene, 367, 17, 10.1016/j.gene.2005.10.019
Grifo, 1984, RNA-stimulated ATPase activity of eukaryotic initiation factors, J. Biol. Chem, 259, 8648, 10.1016/S0021-9258(17)39779-X
Korneeva, 2005, Interaction between the NH2-terminal domain of eIF4A and the central domain of eIF4G modulates RNA-stimulated ATPase activity, J. Biol. Chem, 280, 1872, 10.1074/jbc.M406168200
Oberer, 2005, Structural basis for the enhancement of eIF4A helicase activity by eIF4G, Genes Dev, 19, 2212, 10.1101/gad.1335305
Bordeleau, 2005, Stimulation of mammalian translation initiation factor eIF4A activity by a small molecule inhibitor of eukaryotic translation, Proc. Natl Acad. Sci. USA, 102, 10460, 10.1073/pnas.0504249102
Low, 2005, Inhibition of eukaryotic translation initiation by the marine natural product pateamine A, Mol. Cell, 20, 709, 10.1016/j.molcel.2005.10.008
Fuller-Pace, 1993, DbpA: a DEAD box protein specifically activated by 23S rRNA, EMBO J, 12, 3619, 10.1002/j.1460-2075.1993.tb06035.x
Nicol, 1995, The ‘DEAD box’ protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA, Proc. Natl Acad. Sci. USA, 92, 11681, 10.1073/pnas.92.25.11681
Tsu, 2001, The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA, RNA, 7, 702, 10.1017/S1355838201010135
Wang, 2006, The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold, RNA, 12, 959, 10.1261/rna.5906
O'Day, 1996, The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA, J. Biol. Chem, 271, 33261, 10.1074/jbc.271.52.33261
Perriman, 2003, ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA, Proc. Natl Acad. Sci. USA, 100, 13857, 10.1073/pnas.2036312100
Xu, 2004, Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA, EMBO J, 23, 376, 10.1038/sj.emboj.7600050
Granneman, 2006, The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis, Nucleic Acids Res, 34, 3189, 10.1093/nar/gkl419
Rozen, 1990, Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F, Mol. Cell. Biol, 10, 1134, 10.1128/MCB.10.3.1134
Rogers, 2001, Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F, J. Biol. Chem, 276, 30914, 10.1074/jbc.M100157200
Tseng, 1998, Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export, EMBO J, 17, 2651, 10.1093/emboj/17.9.2651
Schmitt, 1999, Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup159p, EMBO J, 18, 4332, 10.1093/emboj/18.15.4332
Iost, 1999, Ded1p, a DEAD-box protein required for translation initation in Saccharomyces cerevisiae, is an RNA helicase, J. Biol. Chem, 274, 17677, 10.1074/jbc.274.25.17677
Gururajan, 1997, An3 protein encoded by a localized maternal mRNA in Xenopus laevis is an ATPase with substrate-specific RNA helicase activity, Biochim. Biophys. Acta, 1350, 169, 10.1016/S0167-4781(96)00155-8
Hirling, 1989, RNA helicase activity associated with the human p68 protein, Nature, 339, 562, 10.1038/339562a0
Okanami, 1998, Characterization of a DEAD box ATPase/RNA helicase protein of Arabidopsis thaliana, Nucleic Acids Res, 26, 2638, 10.1093/nar/26.11.2638
Liang, 1994, Localization of vasa protein to the Drosophila pole plasm is independent of its RNA-binding and helicase activities, Development, 120, 1201, 10.1242/dev.120.5.1201
Ladomery, 1997, Xp54, the Xenopus homologue of human RNA helicase p54, is an integral component of stored mRNP particles in oocytes, Nucleic Acids Res, 25, 965, 10.1093/nar/25.5.965
Valdez, 1997, RNA-unwinding and RNA-folding activities of RNA helicase II/Gu—two activities in separate domains of the same protein, Eur. J. Biochem, 250, 800, 10.1111/j.1432-1033.1997.00800.x
Valdez, 2002, Expression, cellular localization, and enzymatic activities of RNA helicase II/Gu(beta), Exp. Cell Res, 276, 249, 10.1006/excr.2002.5538
Yu, 2000, Characterization of the cold stress-induced cyanobacterial DEAD-box protein CrhC as an RNA helicase, Nucleic Acids Res, 28, 3926, 10.1093/nar/28.20.3926
Uhlmann-Schiffler, 2006, Ddx42p—a human DEAD box protein with RNA chaperone activities, Nucleic Acids Res, 34, 10, 10.1093/nar/gkj403
Rocak, 2005, Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs, Nucleic Acids Res, 33, 999, 10.1093/nar/gki244
Bizebard, 2004, Studies on three E.coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases, Biochemistry, 43, 7857, 10.1021/bi049852s
Kikuma, 2004, Dbp9p, a member of the DEAD box protein family, exhibits DNA helicase activity, J. Biol. Chem, 279, 20692, 10.1074/jbc.M400231200
Li, 2001, Cloning and characterization of a DEAD box RNA helicase from the viable seedlings of aged mung bean, Plant Mol. Biol, 47, 761, 10.1023/A:1013687412020
Yan, 2003, A novel domain within the DEAD-box protein DP103 is essential for transcriptional repression and helicase activity, Mol. Cell. Biol, 23, 414, 10.1128/MCB.23.1.414-423.2003
Diges, 2001, Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA, EMBO J, 20, 5503, 10.1093/emboj/20.19.5503
Sengoku, 2006, Structural basis for RNA unwinding by the DEAD-box protein Drosophila vasa, Cell, 125, 287, 10.1016/j.cell.2006.01.054
Linder, 2006, Bent out of shape: RNA unwinding by the DEAD-box helicase vasa, Cell, 125, 219, 10.1016/j.cell.2006.03.030
Chen, 2001, Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor, Mol. Cell, 7, 227, 10.1016/S1097-2765(01)00170-8
Kistler, 2001, Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for Sub2, an essential spliceosomal ATPase, Genes Dev, 15, 42, 10.1101/gad.851301
Lund, 2005, The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim, Mol. Cell, 20, 645, 10.1016/j.molcel.2005.10.005
Bassler, 2001, Identification of a 60S preribosomal particle that is closely linked to nuclear export, Mol. Cell, 88, 517, 10.1016/S1097-2765(01)00342-2
De Marchis, 2005, Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation, RNA, 11, 495, 10.1261/rna.7200205
Dragon, 2002, A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis, Nature, 417, 967, 10.1038/nature00769
Gavin, 2002, Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature, 415, 141, 10.1038/415141a
Grandi, 2002, 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors, Mol. Cell, 10, 105, 10.1016/S1097-2765(02)00579-8
Ho, 2002, Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature, 415, 180, 10.1038/415180a
Nissan, 2002, 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm, EMBO J, 21, 5539, 10.1093/emboj/cdf547
Saveanu, 2003, Sequential protein association with nascent 60S ribosomal particles, Mol. Cell. Biol, 23, 4449, 10.1128/MCB.23.13.4449-4460.2003
Schafer, 2003, The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes, EMBO J, 22, 1370, 10.1093/emboj/cdg121
Jurica, 2003, Pre-mRNA splicing: awash in a sea of proteins, Mol. Cell, 12, 5, 10.1016/S1097-2765(03)00270-3
Staley, 1998, Mechanical devices of the spliceosome: motors, clocks, springs, and things, Cell, 92, 315, 10.1016/S0092-8674(00)80925-3
Liu, 2002, p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5′ splice site duplex, Mol. Cell. Biol, 22, 5443, 10.1128/MCB.22.15.5443-5450.2002
Guil, 2003, Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation, Mol. Cell. Biol, 23, 2927, 10.1128/MCB.23.8.2927-2941.2003
Honig, 2002, Regulation of alternative splicing by the ATP-dependent DEAD-box RNA helicase p72, Mol. Cell. Biol, 22, 5698, 10.1128/MCB.22.16.5698-5707.2002
Jamieson, 1991, A suppressor of a yeast splicing mutation (prp8–1) encodes a putative ATP-dependent RNA helicase, Nature, 349, 715, 10.1038/349715a0
Stevens, 2002, Composition and functional characterization of the yeast spliceosomal penta-snRNP, Mol. Cell, 9, 31, 10.1016/S1097-2765(02)00436-7
Arenas, 1997, Prp43: an RNA helicase-like factor involved in spliceosome disassembly, Proc. Natl Acad. Sci. USA, 94, 11798, 10.1073/pnas.94.22.11798
Chen, 1990, The yeast PRP2 protein, a putative RNA-dependent ATPase, shares extensive sequence homology with two other pre-mRNA splicing factors, Nucleic Acids Res, 18, 6447, 10.1093/nar/18.21.6447
Company, 1991, Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes, Nature, 349, 487, 10.1038/349487a0
King, 1990, Interactions of PRP2 protein with pre-mRNA splicing complexes in Saccharomyces cerevisiae, Nucleic Acids Res, 18, 6559, 10.1093/nar/18.22.6559
Martin, 2002, Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome, J. Biol. Chem, 277, 17743, 10.1074/jbc.M200762200
Schwer, 1991, PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome, Nature, 349, 494, 10.1038/349494a0
Silverman, 2003, DExD/H-box proteins and their partners: helping RNA helicases unwind, Gene, 312, 1, 10.1016/S0378-1119(03)00626-7
Ferraiuolo, 2004, A nuclear translation-like factor eIF4AIII is recruited to the mRNA during splicing and functions in nonsense-mediated decay, Proc. Natl Acad. Sci. USA, 101, 4118, 10.1073/pnas.0400933101
Ballut, 2005, The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity, Nature Struct. Mol. Biol, 12, 861, 10.1038/nsmb990
Kressler, 1997, Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae, Mol. Cell. Biol, 17, 7283, 10.1128/MCB.17.12.7283
Kressler, 1999, Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae, Mol. Cell. Biol, 19, 7897, 10.1128/MCB.19.12.7897
Venema, 1999, Ribosome biosynthesis in Saccharomyces cerevisiae, Ann. Rev. Gen, 33, 261, 10.1146/annurev.genet.33.1.261
Bernstein, 2006, Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis, Mol. Cell. Biol, 26, 1195, 10.1128/MCB.26.4.1195-1208.2006
Granneman, 2006, Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis, Mol. Cell. Biol, 26, 1183, 10.1128/MCB.26.4.1183-1194.2006
Scherl, 2002, Functional proteomic analysis of human nucleolus, Mol. Biol. Cell, 13, 4100, 10.1091/mbc.E02-05-0271
Kos, 2005, The putative RNA helicase Dbp4p is required for release of the U14 snoRNA from preribosomes in Saccharomyces cerevisiae, Mol. Cell, 20, 53, 10.1016/j.molcel.2005.08.022
Emery, 2004, Has1p, a member of the DEAD-box family, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae, Mol. Microbiol, 52, 141, 10.1111/j.1365-2958.2003.03973.x
Snay-Hodge, 1998, Dbp5p/Rat8p is a yeast nuclear pore-associated DEAD-box protein essential for RNA export, EMBO J, 17, 2663, 10.1093/emboj/17.9.2663
Zhao, 2002, The mRNA export factor Dbp5 is associated with Balbiani ring mRNP from gene to cytoplasm, EMBO J, 21, 1177, 10.1093/emboj/21.5.1177
Estruch, 2003, An early function during transcription for the yeast mRNA export factor Dbp5p/Rat8p suggested by its genetic and physical interactions with transcription factor IIH components, Mol. Biol. Cell, 14, 1664, 10.1091/mbc.E02-09-0602
Gatfield, 2001, The DExH/D protein HEL/UAP56 is essential for mRNA nuclear export in Drosophila, Curr. Biol, 11, 1716, 10.1016/S0960-9822(01)00532-2
Jensen, 2001, The DECD-box putative ATPase Sub2p is an early mRNA export factor, Curr. Biol, 11, 1711, 10.1016/S0960-9822(01)00529-2
Luo, 2001, Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly, Nature, 413, 644, 10.1038/35098106
Strasser, 2001, Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p, Nature, 413, 648, 10.1038/35098113
Pryor, 2004, Growth-regulated expression and G0-specific turnover of the mRNA that encodes URH49, a mammalian DExH/D box protein that is highly related to the mRNA export protein UAP56, Nucleic Acids Res, 32, 1857, 10.1093/nar/gkh347
Grifo, 1982, Characterization of eukaryotic initiation factor 4A, a protein involved in ATP-dependent binding of globin mRNA, J. Biol. Chem, 257, 5246, 10.1016/S0021-9258(18)34662-3
Duncan, 1983, Identification and quantification of levels of protein synthesis initiation factors in crude HeLa cell lysates by two-dimentional polyacrylamide gel electrophoresis, J. Biol. Chem, 258, 7228, 10.1016/S0021-9258(18)32356-1
von der Haar, 2002, Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function, Mol. Microbiol, 46, 531, 10.1046/j.1365-2958.2002.03172.x
Richter, 1999, Further biochemical and kinetic characterization of human eukaryotic initiation factor 4H, J. Biol. Chem, 274, 35415, 10.1074/jbc.274.50.35415
Sonenberg, 1988, Cap-binding proteins of eukaryotic messenger RNA: functions in initiation and control of translation, Prog. Nucleic Acid Res. Mol. Biol, 35, 173, 10.1016/S0079-6603(08)60614-5
Daga, 1999, Translational control of the cdc25 cell cycle phosphatase: a molecular mechanism coupling mitosis to cell growth, J. Cell Sci, 112, 3137, 10.1242/jcs.112.18.3137
Chuang, 1997, Requirement of the DEAD-box protein Ded1p for messenger RNA translation, Science, 275, 1468, 10.1126/science.275.5305.1468
de la Cruz, 1997, The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae, Proc. Natl Acad. Sci. USA, 94, 5201, 10.1073/pnas.94.10.5201
Berthelot, 2004, Dynamics and processivity of 40S ribosome scanning on mRNA in yeast, Mol. Microbiol, 51, 987, 10.1046/j.1365-2958.2003.03898.x
Carrera, 2000, VASA mediates translation through interaction with a Drosophila yIF2 homolog, Mol. Cell, 5, 181, 10.1016/S1097-2765(00)80414-1
Khemici, 2005, Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E, Proc. Natl Acad. Sci. USA, 102, 6913, 10.1073/pnas.0501129102
Py, 1996, A DEAD-box RNA helicase in the Escherichia coli RNA degradosome, Nature, 381, 169, 10.1038/381169a0
Anderson, 1998, The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex, EMBO J, 17, 1497, 10.1093/emboj/17.5.1497
LaCava, 2005, RNA degradation by the exosome is promoted by a nuclear polyadenylation complex, Cell, 121, 713, 10.1016/j.cell.2005.04.029
Margossian, 1996, RNA turnover and the control of mitochondrial gene expression, Trends Biochem. Sci, 21, 392, 10.1016/S0968-0004(96)10049-9
Raijmakers, 2004, The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm, Eur. J. Cell Biol, 83, 175, 10.1078/0171-9335-00385
Coller, 2001, The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes, RNA, 7, 1717, 10.1017/S135583820101994X
Coller, 2005, General translational repression by activators of mRNA decapping, Cell, 122, 875, 10.1016/j.cell.2005.07.012
Minshall, 2001, A conserved role of a DEAD box helicase in mRNA masking, RNA, 7, 1728, 10.1017/S135583820101158X
Smillie, 2002, RNA helicase p54 (DDX6) is a shuttling protein involved in nuclear assembly of stored mRNP particles, J. Cell Sci, 115, 395, 10.1242/jcs.115.2.395
Huang, 2005, The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function, Proc. Natl Acad. Sci. USA, 102, 163, 10.1073/pnas.0407896101
Minczuk, 2002, Overexpressed yeast mitochondrial putative RNA helicase Mss116 partially restores proper mtRNA metabolism in strains lacking the Suv3 mtRNA helicase, Yeast, 19, 1285, 10.1002/yea.906
Missel, 1997, Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs, Mol. Cell. Biol, 17, 4895, 10.1128/MCB.17.9.4895
Stuart, 2005, Complex management: RNA editing in trypanosomes, Trends Biochem. Sci, 30, 97, 10.1016/j.tibs.2004.12.006
Godbout, 1993, Amplification of a DEAD box protein gene in retinoblastoma cell lines, Proc. Natl Acad. Sci. USA, 90, 7578, 10.1073/pnas.90.16.7578
Fang, 2004, A DEAD box protein facilitates HIV-1 replication as a cellular co-factor of Rev, Virology, 330, 471, 10.1016/j.virol.2004.09.039
Blum, 1989, Translation in Saccharomyces cerevisiae: initiation factor 4A-dependent cell-free system, Proc. Natl Acad. Sci. USA, 86, 6043, 10.1073/pnas.86.16.6043
Sekiguchi, 2004, Human DDX3Y, the Y-encoded isoform of RNA helicase DDX3, rescues a hamster temperature-sensitive ET24 mutant cell line with a DDX3X mutation, Exp. Cell Res, 300, 213, 10.1016/j.yexcr.2004.07.005
Ditton, 2004, The AZFa gene DBY (DDX3Y) is widely transcribed but the protein is limited to the male germ cells by translation control, Hum. Mol. Genet, 13, 2333, 10.1093/hmg/ddh240
Hayashi, 1996, Genetic interaction of DED1 encoding a putative ATP-dependent RNA helicase with SRM1 encoding a mammalian RCC1 homolog in Saccharomyces cerevisiae, Mol. Gen. Genet, 253, 149, 10.1007/s004380050307
Chung, 1995, Identification of a human homolog of a putative RNA helicase gene (mDEAD3) expressed in mouse erythroid cells, Korean J. Biochem, 27, 193
Yedavalli, 2004, Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function, Cell, 119, 381, 10.1016/j.cell.2004.09.029
Castrillon, 2000, The human VASA gene is specifically expressed in the germ cell lineage, Proc. Natl Acad. Sci. USA, 97, 9585, 10.1073/pnas.160274797
Johnstone, 2004, Interaction with eIF5B is essential for Vasa function during development, Development, 131, 4167, 10.1242/dev.01286
Hloch, 1990, Complete cDNA sequence of the human p68 protein, Nucleic Acids Res, 18, 3045, 10.1093/nar/18.10.3045
Ford, 1988, Nuclear protein with sequence homology to translation initiation factor eIF-4A, Nature, 332, 736, 10.1038/332736a0
Bond, 2001, Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processing, Mol. Cell. Biol, 21, 7366, 10.1128/MCB.21.21.7366-7379.2001
Lamm, 1996, p72: a human nuclear DEAD box protein highly related to p68, Nucleic Acids Res, 24, 3739, 10.1093/nar/24.19.3739
Akao, 2003, A tumour-associated DEAD-box protein, rck/p54 exhibits RNA unwinding activity toward c-myc RNAs in vitro, Genes Cells, 8, 671, 10.1046/j.1365-2443.2003.00665.x
Akao, 1992, The RCK gene associated with t(11;14) translocation is distinct from the MLL/ALL-1 gene with t(4;11) and t(11;19) translocations, Cancer Res, 52, 6083
Lu, 1992, Cloning, expression and localization of an RNA helicase gene from a human lymphoid cell line with chromosomal breakpoint 11q23.3, Nucleic Acids Res, 20, 1967, 10.1093/nar/20.8.1967
Fischer, 2002, The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1, EMBO J, 21, 2788, 10.1093/emboj/21.11.2788
Savitsky, 1996, A human gene (DDX10) encoding a putative DEAD-box RNA helicase at 11q22-q23, Genomics, 33, 199, 10.1006/geno.1996.0184
Liang, 1997, The rRNA-processing function of the yeast U14 small nucleolar RNA can be rescued by a conserved RNA helicase-like protein, Mol. Cell. Biol, 17, 4124, 10.1128/MCB.17.7.4124
Grandori, 1996, Myc-Max heterodimers activate a DEAD box gene and interact with multiple E box-related sites in vivo, EMBO J, 15, 4344, 10.1002/j.1460-2075.1996.tb00808.x
Tang, 1999, A novel gonadotropin-regulated testicular RNA helicase. A new member of the dead-box family, J. Biol. Chem, 274, 37932, 10.1074/jbc.274.53.37932
Charroux, 1999, Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems, J. Cell Biol, 147, 1181, 10.1083/jcb.147.6.1181
Grundhoff, 1999, Characterization of DP103, a novel DEAD box protein that binds to the Epstein–Barr virus nuclear proteins EBNA2 and EBNA3C, J. Biol. Chem, 274, 19136, 10.1074/jbc.274.27.19136
Valdez, 1996, A nucleolar RNA helicase recognized by autoimmune antibodies from a patient with watermelon stomach disease, Nucleic Acids Res, 24, 1220, 10.1093/nar/24.7.1220
Henning, 2003, Silencing of RNA helicase II/Gualpha inhibits mammalian ribosomal RNA production, J. Biol. Chem, 278, 52307, 10.1074/jbc.M310846200
Yang, 2003, Down-regulation of RNA helicase II/Gu results in the depletion of 18 and 28 S rRNAs in Xenopus oocyte, J. Biol. Chem, 278, 38847, 10.1074/jbc.M302258200
Valdez, 2002, Genomic structure of newly identified paralogue of RNA helicase II/Gu: detection of pseudogenes and multiple alternatively spliced mRNAs, Gene, 284, 53, 10.1016/S0378-1119(01)00888-5
Westermarck, 2002, The DEXD/H-box RNA helicase RHII/Gu is a co-factor for c-Jun-activated transcription, EMBO J, 21, 451, 10.1093/emboj/21.3.451
Teigelkamp, 1997, The human U5 snRNP-specific 100-kD protein is an RS domain-containing, putative RNA helicase with significant homology to the yeast splicing factor Prp28p, RNA, 3, 1313
Strauss, 1994, PRP28, a ‘DEAD-box’ protein, is required for the first step of mRNA splicing in vitro, Nucleic Acids Res, 22, 3187, 10.1093/nar/22.15.3187
Staley, 1999, An RNA switch at the 5′ splice site requires ATP and the DEAD box protein Prp28p, Mol. Cell, 3, 55, 10.1016/S1097-2765(00)80174-4
Zhao, 2000, Cloning and characterization of human DDX24 and mouse Ddx24, two novel putative DEAD-Box proteins, and mapping DDX24 to human chromosome 14q32, Genomics, 67, 351, 10.1006/geno.2000.6255
Zagulski, 2003, Mak5p, which is required for the maintenance of the M1 dsRNA virus, is encoded by the yeast ORF YBR142w and is involved in the biogenesis of the 60S subunit of the ribosome, Mol. Genet. Genomics, 270, 216, 10.1007/s00438-003-0913-4
Ripmaster, 1992, A putative ATP-dependent RNA helicase involved in Saccharomyces cerevisiae ribosome assembly, Proc. Natl Acad. Sci. USA, 89, 11131, 10.1073/pnas.89.23.11131
Daugeron, 1998, Dbp7p, a putative ATP-dependent RNA helicase of Saccharomyces cerevisiae is required for 60S ribosomal subunit assembly, RNA, 4, 566, 10.1017/S1355838298980190
Peelman, 1995, The BAT1 gene in the MHC encodes an evolutionarily conserved putative nuclear RNA helicase of the DEAD family, Genomics, 26, 210, 10.1016/0888-7543(95)80203-X
Fleckner, 1997, U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction, Genes Dev, 11, 1864, 10.1101/gad.11.14.1864
Lehner, 2004, Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region, Genomics, 83, 153, 10.1016/S0888-7543(03)00235-0
Shi, 2004, Crystal structure of the human ATP-dependent splicing and export factor UAP56, Proc. Natl Acad. Sci. USA, 101, 17628, 10.1073/pnas.0408172101
Irion, 2004, Abstrakt, a DEAD box protein, regulates Insc levels and asymmetric division of neural and mesodermal progenitors, Curr. Biol, 14, 138, 10.1016/j.cub.2004.01.002
Irion, 1999, Developmental and cell biological functions of the Drosophila DEAD-box protein abstrakt, Curr. Biol, 9, 1373, 10.1016/S0960-9822(00)80082-2
Will, 2002, Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein, EMBO J, 21, 4978, 10.1093/emboj/cdf480
Martelange, 2000, Identification on a human sarcoma of two new genes with tumor-specific expression, Cancer Res, 60, 3848
Cho, 2002, Identification and characterization of a novel cancer/testis antigen gene CAGE, Biochem. Biophys. Res. Commun, 292, 715, 10.1006/bbrc.2002.6701
Dalbadie-McFarland, 1990, PRP5: a helicase-like protein required for mRNA splicing in yeast, Proc. Natl Acad. Sci. USA, 87, 4236, 10.1073/pnas.87.11.4236
O'Day, 1996, 18S rRNA processing requires the RNA helicase-like protein Rrp3, Nucleic Acids Res, 24, 3201, 10.1093/nar/24.16.3201
Chan, 2004, eIF4A3 is a novel component of the exon junction complex, RNA, 10, 200, 10.1261/rna.5230104
Daugeron, 2001, Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis, Nucleic Acids Res, 29, 1144, 10.1093/nar/29.5.1144
Kressler, 1998, Dbp6p is an essential putative ATP-dependent RNA helicase required for 60S-ribosomal-subunit assembly in Saccharomyces cerevisiae, Mol. Cell. Biol, 18, 1855, 10.1128/MCB.18.4.1855
Venema, 1997, Rok1p is a putative RNA helicase required for rRNA processing, Mol. Cell. Biol, 17, 3398, 10.1128/MCB.17.6.3398
Rajendran, 2003, Regulation of nuclear receptor transcriptional activity by a novel DEAD box RNA helicase (DP97), J. Biol. Chem, 278, 4628, 10.1074/jbc.M210066200
Burger, 2000, Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis, Nucleic Acids Res, 28, 2315, 10.1093/nar/28.12.2315
de la Cruz, 1998, Spb4p, an essential putative RNA helicase, is required for a late step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae, RNA, 4, 1268, 10.1017/S1355838298981158
Zirwes, 2000, A novel helicase-type protein in the nucleolus: protein NOH61, Mol. Biol. Cell, 11, 1153, 10.1091/mbc.11.4.1153
Daugeron, 2001, Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal-subunit biogenesis, functionally interacts with Dbp6p, RNA, 7, 1317, 10.1017/S1355838201010640
Niemer, 1995, Overexpression of DEAD box protein pMSS116 promotes ATP-dependent splicing of a yeast group II intron in vitro, Nucleic Acids Res, 23, 2966, 10.1093/nar/23.15.2966