Influence of irrigated agriculture on soil microbial diversity

Bailey, 1998 Baker, 2007, Tillage and soil carbon sequestration—What do we really know?, Ecosys. Environ., 118, 1, 10.1016/j.agee.2006.05.014 Balvanera, 2006, Quantifying the evidence for biodiversity effects on ecosystem functioning and services, Ecol. Lett., 9, 1146, 10.1111/j.1461-0248.2006.00963.x Bernhard, 2005, Microbial community analysis based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries, FEMS Microbial. Ecol., 52, 115, 10.1016/j.femsec.2004.10.016 Blake, 1982, Bulk density, 363 Bruce, 1999, Carbon sequestration in soils, J. Soil Water Conserv., 59, 382 Brussaard, 1997, Biodiversity and ecosystem functioning in soil, Ambio, 26, 563 Collett, 1982 Dunbar, 1999, Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning, Appl. Environ. Microbiol., 65, 1662, 10.1128/AEM.65.4.1662-1669.1999 Dunbar, 2000, Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis, Appl. Environ. Microbiol., 66, 2943, 10.1128/AEM.66.7.2943-2950.2000 Dunbar, 2001, Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities, Appl. Environ. Microbiol., 67, 190, 10.1128/AEM.67.1.190-197.2001 Embley, 1996, The Use of 16S ribosomal RNA sequences in microbial ecology, 39 Entry, 2002, Managment of irrigated agriculture to increase carbon storage in soils, Soil Sci. Soc. Am. J., 66, 1957, 10.2136/sssaj2002.1957 Follett, 2001, Soil management concepts and carbon sequestration in cropland soils, Soil Till. Res., 61, 77, 10.1016/S0167-1987(01)00180-5 Fierer, 2006, The diversity and biogeography of soil bacterial communities, PNAS, 103, 6260631, 10.1073/pnas.0507535103 Garbeva, 2004, Microbial diversity in soil. Selection of microbial populations by plant and soil type and implications for disease suppressiveness, Ann. Rev. Phytopathol., 42, 243, 10.1146/annurev.phyto.42.012604.135455 Girvan, 2003, Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils, Appl. Environ. Microbiol., 69, 1800, 10.1128/AEM.69.3.1800-1809.2003 Head, 1998, Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms, Microb. Ecol., 35, 1, 10.1007/s002489900056 Hooper, 2005, Effects of biodiversity on ecosystem functioning: a consensus of current knowledge, Ecol. Monogr., 75, 3, 10.1890/04-0922 Hugenholtz, 1998, Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity, J. Bacatoeriol., 180, 4765, 10.1128/JB.180.18.4765-4774.1998 Ingham, 1984, Soil fungi relationships between hyphal activity and staining with fluorescein diacetate, Soil Biol. Biochem., 16, 273, 10.1016/0038-0717(84)90014-2 Jenkinson, 1981, Microibal biomass in soils: measurement and turnover, vol. 5, 415 Johnson, 2003, DNA fingerprinting reveals links among agricultural crops, soil properties and the composition of soil microbial communities, Geoderma, 114, 279, 10.1016/S0016-7061(03)00045-4 Kardol, 2007, Microbe-mediated plant-soil feedback causes historical contingency effects in plant community assembly, Ecol. Monogr., 77, 147, 10.1890/06-0502 Kirk, 2004, Methods of studying microbial diversity, J. Microb. Methods, 58, 169, 10.1016/j.mimet.2004.04.006 Kirk, 1982, Experimental design Lodge, 1991, A comparison of agar film techniques for estimating fungal biovolumes in litter and soil, Agric. Ecosys. Environ., 5, 31 Mills, 2007, Assessing microbial community diversity using amplicon length heterogeneity polymerase chain reaction, Soil Sci. Soc. Am. J., 71, 572, 10.2136/sssaj2006.0147 Mills, 2006, An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices, FEMS Microbiol., 57, 496, 10.1111/j.1574-6941.2006.00135.x Mills, 2003, A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils, J. Microbiol. Methods, 54, 57, 10.1016/S0167-7012(03)00007-1 Nakatsu, 2007, Soil microbial community analysis using denaturing gradient gel electrophoresis, Soil Sci. Soc. Am. J., 71, 562, 10.2136/sssaj2006.0080 Nannipieri, 2003, Microbial diversity and soil functions, Eur. J. Soil Sci., 54, 655, 10.1046/j.1351-0754.2003.0556.x Nelson, 1996, Total carbon, organic carbon and organic matter, 961 Paustian, 1997, Agricultural soil as a C sink to offset CO2 emissions, Soil Use Manage., 13, 230, 10.1111/j.1475-2743.1997.tb00594.x Ritchie, 2000, Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil, Appl. Environ. Microbiol., 66, 1668, 10.1128/AEM.66.4.1668-1675.2000 Rogers, 2007, Fluorescent in situ hybridization and micro-autoradiography applied to ecophysiology in soil, Soil Sci. Soc. Am. J., 71, 620, 10.2136/sssaj2006.0105 SAS, 1996 Snedecor, 1980 Stadmatiadis, 1990, Use of staining inhibitors to separate fungal and bacterial activity in soil, Soil Biol. Biochem., 22, 81, 10.1016/0038-0717(90)90064-7 Sun, 2004, Bacterial community structure and diversity in a century-old manure-treated agroecosystem, Appl. Environ. Microbiol., 70, 5868, 10.1128/AEM.70.10.5868-5874.2004 Swift, 2004, Biodiversity and ecosystem services in agricultural landscapes-are we asking the right questions?, Agric. Ecosyst. Environ., 104, 113, 10.1016/j.agee.2004.01.013 Suzuki, 1998, Kinetic bias in estimates of Coastal Picoplankton community structure obtained by measurements of small-subunit rRNA Gene PCR amplicon length heterogeneity, Appl. Environ. Microbiol., 64, 4522, 10.1128/AEM.64.11.4522-4529.1998 Thies, 2007, Soil microbial community analysis using terminal restriction fragment polymorphisms, Soil Sci. Soc. Am. J., 71, 579, 10.2136/sssaj2006.0318 Torsvik, 2002, Microbial diversity and function in soil: from genes to ecosystems, Curr. Opin. Microbiol., 5, 240, 10.1016/S1369-5274(02)00324-7 VandenBygaart, 2003, Influence of agricultural management on soil organic carbon: a compendium and assessment of Canadian studies, Can. J. Soil Sci., 83, 363, 10.4141/S03-009 van Elsas, 2002, Effects of agronomical pressures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens, Biodegradation, 13, 29, 10.1023/A:1016393915414 Waldrop, 2006, Resource availability controls fungal diversity across a plant diversity gradient, Ecol. Lett., 9, 1127, 10.1111/j.1461-0248.2006.00965.x Wang, 1999, The impact of land use change on C turnover in soils, Global Biogeochem. Cycl., 13, 47, 10.1029/1998GB900005 West, 1986, Changes in microbial C, N, P, and ATP contents, numbers, respiration on storage in soil, Soil Biol. Biochem., 18, 141, 10.1016/0038-0717(86)90018-0 West, 2002, A synthesis of carbon sequestration, coarbon emissions, and net carbon flux in agriculture: comparing tillage practices in the United States, Agric. Ecosyst. Environ., 91, 217, 10.1016/S0167-8809(01)00233-X Weis, 2007, Effects of species diversity in community biomass production chanhe over the course of succession, Ecology, 88, 929, 10.1890/06-0943 Zhou, 2002, Spatial and resource factors influencing high microbial diversity in soil, Appl. Environ. Microbiol., 68, 326, 10.1128/AEM.68.1.326-334.2002