Massively parallel sequencing of 10 autosomal STRs in Chinese using the ion torrent personal genome machine (PGM)

Forensic Science International: Genetics - Tập 25 - Trang 34-38 - 2016
Xueying Zhao1, Hui Li1, Zheng Wang2, Ke Ma1, Yu Cao3,4, Wenbin Liu1
1Shanghai Key Laboratory of Crime Scene Evidence, Shanghai Research Institute of Criminal Science and Technology, North Zhongshan No.1 Road 803, Shanghai 200083, China
2Institute of Forensic Medicine, West China School of Preclinical and Forensic Medicine, Sichuan University, Chengdu 610041, China
3Key Laboratory of Forensic Evidence and Science Technology, Ministry of Public Security, Institute of Forensic Science, Shanghai Public Security Bureau, Shanghai 200083, China
4State Key Laboratory of Genetic Engineering and MOE Key Laboratory of Contemporary Anthropology, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai 200438, China

Tài liệu tham khảo

Phillips, 2014, New turns from old STaRs: enhancing the capabilities of forensic short tandem repeat analysis, Electrophoresis, 35, 3173, 10.1002/elps.201400095 Gettings, 2015, STR allele sequence variation: current knowledge and future issues, Forensic Sci. Int. Genet., 18, 118, 10.1016/j.fsigen.2015.06.005 Gettings, 2015, Sequence variation of 22 autosomal STR loci detected by next generation sequencing, Forensic Sci. Int. Genet., 21, 15, 10.1016/j.fsigen.2015.11.005 Planz, 2012, Automated analysis of sequence polymorphism in STR alleles by PCR and direct electrospray ionization mass spectrometry, Forensic Sci. Int. Genet., 6, 594, 10.1016/j.fsigen.2012.02.002 Churchill, 2016, Evaluation of the Illumina® beta version ForenSeq™ DNA signature prep kit for use in genetic profiling, Forensic Sci. Int. Genet., 20, 20, 10.1016/j.fsigen.2015.09.009 Rockenbauer, 2014, Characterization of mutations and sequence variants in the D21S11 locus by next generation sequencing, Forensic Sci. Int. Genet., 8, 68, 10.1016/j.fsigen.2013.06.011 Zeng, 2015, High sensitivity multiplex short tandem repeat loci analyses with massively parallel sequencing, Forensic Sci. Int. Genet., 16, 38, 10.1016/j.fsigen.2014.11.022 Zeng, 2015, An evaluation of the PowerSeq™ Auto System: a multiplex short tandem repeat marker kit compatible with massively parallel sequencing, Forensic Sci. Int. Genet., 19, 172, 10.1016/j.fsigen.2015.07.015 Fordyce, 2015, Second-generation sequencing of forensic STRs using the ion torrent™ HID STR 10-plex and the ion PGM™, Forensic Sci. Int. Genet., 14, 132, 10.1016/j.fsigen.2014.09.020 Børsting, 2015, Next generation sequencing and its applications in forensic genetics, Forensic Sci. Int. Genet., 18, 78, 10.1016/j.fsigen.2015.02.002 Scheible, 2014, Short tandem repeat typing on the 454 platform: strategies and considerations for targeted sequencing of common forensic markers, Forensic Sci. Int. Genet., 12, 107, 10.1016/j.fsigen.2014.04.010 Gelardi, 2014, Second generation sequencing of three STRs D3S1358: D12S391 and D21S11 in Danes and a new nomenclature for sequenced STR alleles, Forensic Sci. Int. Genet., 12, 38, 10.1016/j.fsigen.2014.04.016 Gettings, 2015, The next dimension in STR sequencing: polymorphisms in flanking regions and their allelic associations, Forensic Sci. Int. Genet. Untergasser, 2007, Primer3Plus, an enhanced web interface to Primer3, Nucleic Acids Res., 35, W71, 10.1093/nar/gkm306 Zhao, 2015, Y-STRs analysis using the ion torrent personal genome machine (PGM), Forensic Sci. Int. Genet., 19, 192, 10.1016/j.fsigen.2015.06.012 Parson, 2016, Massively parallel sequencing of forensic STRs: considerations of the DNA commission of the International Society for Forensic Genetics (ISFG) on minimal nomenclature requirements, Forensic Sci. Int. Genet., 22, 54, 10.1016/j.fsigen.2016.01.009 Børsting, 2014, Evaluation of the Ion Torrent™ HID SNP 169-plex: a SNP typing assay developed for human identification by second generation sequencing, Forensic Sci. Int. Genet., 12, 144, 10.1016/j.fsigen.2014.06.004 Kim, 2016, Massively parallel sequencing of 17 commonly used forensic autosomal STRs and amelogenin with small amplicons, Forensic Sci. Int. Genet., 22, 1, 10.1016/j.fsigen.2016.01.001 Van Neste, 2016, Forensic Loci Allele Database (FLAD): Automatically generated: permanent identifiers for sequenced forensic alleles, Forensic Sci. Int. Genet., 20, 1, 10.1016/j.fsigen.2015.09.006 Parson, 2013, Evaluation of next generation mtGenome sequencing using the ion torrent personal genome machine (PGM), Forensic Sci. Int. Genet., 7, 632, 10.1016/j.fsigen.2013.09.007 Loman, 2012, Performance comparison of benchtop high-throughput sequencing platforms, Nat. Biotechnol., 30, 434, 10.1038/nbt.2198