Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
Tóm tắt
Từ khóa
Tài liệu tham khảo
Chisholm, S. W. et al. A novel free-living prochlorophyte abundant in the oceanic euphotic zone. Nature 334, 340–343 (1988)
Campbell, L., Liu, H., Nolla, H. & Vaulot, D. Annual variability of phytoplankton and bacteria in the subtropical North Pacific Ocean at Station ALOHA during the 1991–1994 ENSO event. Deep Sea Res. I 44, 167–192 (1997)
DuRand, M. D., Olson, R. J. & Chisholm, S. W. Phytoplankton population dynamics at the Bermuda Atlantic Time-series Station in the Sargasso Sea. Deep Sea Res. II 48, 1983–2003 (2001)
Rocap, G., Distel, D. L., Waterbury, J. B. & Chisholm, S. W. Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S–23S rDNA internal transcribed spacer (ITS) sequences. Appl. Environ. Microbiol. 68, 1180–1191 (2002)
Moore, L. R. & Chisholm, S. W. Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates. Limnol. Oceanogr. 44, 628–638 (1999)
Moore, L. R., Rocap, G. & Chisholm, S. W. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393, 464–467 (1998)
Moore, L. R., Goericke, R. E. & Chisholm, S. W. Comparative physiology of Synechococcus and Prochlorococcus: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Mar. Ecol. Prog. Ser. 116, 259–275 (1995)
Mann, E. L., Ahlgren, N., Moffett, J. W. & Chisholm, S. W. Copper toxicity and cyanobacteria ecology in the Sargasso Sea. Limnol. Oceanogr. 47, 976–988 (2002)
Moore, L. R., Post, A. F., Rocap, G. & Chisholm, S. W. Utilization of different nitrogen sources by the marine cyanobacteria, Prochlorococcus and Synechococcus. Limnol. Oceanogr. 47, 989–996 (2002)
Sullivan, M. B., Waterbury, J. B. & Chisholm, S. W. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature (in the press)
Hagström, Å. et al. Use of 16S ribosomal DNA for delineation of marine bacterioplankton species. Appl. Environ. Microbiol. 68, 3628–3633 (2002)
West, N. J. et al. Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147, 1731–1744 (2001)
La Roche, J. et al. Independent evolution of the prochlorophyte and green plant chlorophyll a/b light harvesting proteins. Proc. Natl Acad. Sci. USA 93, 15244–15248 (1996)
Hess, W. et al. The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics. Photosynth. Res. 70, 53–71 (2001)
Stickforth, P., Steiger, S., Hess, W. R. & Sandmann, G. A novel type of lycopene ε-cyclase in the marine cyanobacterium Prochlorococcus marinus MED4. Arch. Microbiol. 179, 407–415 (2003)
Frankenberg, N., Mukougawa, K., Kohchi, T. & Lagarias, J. C. Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms. Plant Cell 13, 965–978 (2001)
Ting, C., Rocap, G., King, J. & Chisholm, S. W. Phycobiliprotein genes of the marine prokaryote Prochlorococcus: Evidence for rapid evolution of genetic heterogeneity. Microbiology 147, 3171–3182 (2001)
Golden, S. S., Brusslan, J. & Haselkorn, R. Expression of a family of psbA genes encoding a photosystem II polypeptide in the cyanobacterium Anacystis nidulans R2. EMBO J. 5, 2789–2798 (1986)
Shen, J. R., Qian, M., Inoue, Y. L. & Burnap, R. L. Functional characterization of Synechocystis sp. PCC 6803 ΔpsbU and ΔpsbV mutants reveals important roles of cytochrome c-550 in cyanobacterial oxygen evolution. Biochemistry 37, 1551–1558 (1998)
Garczarek, L., van der Staay, G. W. M., Hess, W. R., Le Gall, F. & Partensky, F. Expression and phylogeny of the multiple antenna genes of the low-light-adapted strain Prochlorococcus marinus SS120 (Oxyphotobacteria). Plant Mol. Biol. 46, 683–693 (2001)
Nakamura, Y. et al. Complete genome structure of the thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res. 9, 123–130 (2002)
Ishiura, M. et al. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobateria. Science 281, 1519–1523 (1998)
Vaulot, D., Marie, D., Olson, R. J. & Chisholm, S. W. Growth of Prochlorococcus, a photosynthetic prokaryote, in the Equatorial Pacific Ocean. Science 268, 1480–1482 (1995)
Michaels, M. L. & Miller, J. H. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-Hydroxyguanine (7,8-Dihydro-8-Oxoguanine). J. Bacteriol. 174, 6321–6325 (1992)
Lindell, D. & Post, A. F. Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat). Red Sea. Limnol. Oceanogr. 40, 1130–1141 (1995)
Karl, D. M., Bidigare, R. R. & Letelier, R. M. Long-term changes in plankton community structure and productivity in the North Pacific Subtropical Gyre: The domain shift hypothesis. Deep Sea Res. II 48, 1449–1470 (2001)
Scanlan, D. J., Mann, N. H. & Carr, N. G. The response of the picoplanktonic marine cyanobacterium Synechococcus species WH7803 to phosphate starvation involves a protein homologous to the periplasmic phosphate binding protein of Escherichia coli. Mol. Microbiol. 10, 181–191 (1993)
Johnson, Z. et al. Energetics and growth kinetics of a deep Prochlorococcus spp. population in the Arabian Sea. Deep Sea Res. II 46, 1719–1743 (1999)
Dufresne, A. et al. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a near minimal oxyphototrophic genome. Proc. Natl Acad. Sci. USA (in the press)