Human Argonaute2 Mediates RNA Cleavage Targeted by miRNAs and siRNAs
Tài liệu tham khảo
Aravin, 2003, The small RNA profile during Drosophila melanogaster development, Dev. Cell, 5, 337, 10.1016/S1534-5807(03)00228-4
Aravin, 2001, Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline, Curr. Biol., 11, 1017, 10.1016/S0960-9822(01)00299-8
Aukerman, 2003, Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes, Plant Cell, 15, 2730, 10.1105/tpc.016238
Bartel, 2004, MicroRNAs, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5
Béclin, 2002, A branched pathway for transgene-induced RNA silencing in plants, Curr. Biol., 12, 684, 10.1016/S0960-9822(02)00792-3
Bernstein, 2001, Role for a bidentate ribonuclease in the initiation step of RNA interference, Nature, 409, 363, 10.1038/35053110
Bernstein, 2003, Dicer is essential for mouse development, Nat. Genet., 35, 215, 10.1038/ng1253
Billy, 2001, Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines, Proc. Natl. Acad. Sci. USA, 98, 14428, 10.1073/pnas.261562698
Bohmert, 1998, AGO1 defines a novel locus of Arabidopsis controlling leaf development, EMBO J., 17, 170, 10.1093/emboj/17.1.170
Bosher, 1999, RNA interference can target pre-mRNA, Genetics, 153, 1245, 10.1093/genetics/153.3.1245
Carmell, 2004, RNase III enzymes and the initiation of gene silencing, Nat. Struct. Mol. Biol., 11, 214, 10.1038/nsmb729
Carmell, 2002, The Argonaute family, Genes Dev., 16, 2733, 10.1101/gad.1026102
Carrington, 2003, Role of microRNAs in plant and animal development, Science, 301, 336, 10.1126/science.1085242
Catalanotto, 2004, Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa, Mol. Cell. Biol., 24, 2536, 10.1128/MCB.24.6.2536-2545.2004
Caudy, 2002, Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev., 16, 2491, 10.1101/gad.1025202
Cerutti, 2000, Domains in gene silencing and cell differentiation proteins, Trends Biochem. Sci., 25, 481, 10.1016/S0968-0004(00)01641-8
Chan, 2004, RNA silencing genes control de novo DNA methylation, Science, 303, 1336, 10.1126/science.1095989
Dalmay, 2000, An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus, Cell, 101, 543, 10.1016/S0092-8674(00)80864-8
Deng, 2002, miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis, Dev. Cell, 2, 819, 10.1016/S1534-5807(02)00165-X
Denli, 2003, Rnai, Trends Biochem. Sci., 28, 196, 10.1016/S0968-0004(03)00058-6
Dignam, 1983, Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei, Nucleic Acids Res., 11, 1475, 10.1093/nar/11.5.1475
Doi, 2003, Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors, Curr. Biol., 13, 41, 10.1016/S0960-9822(02)01394-5
Dorsett, 2004, siRNAs, Nat. Rev. Drug Discov., 3, 318, 10.1038/nrd1345
Dostie, 2003, Numerous microRNPs in neuronal cells containing novel microRNAs, RNA, 9, 180, 10.1261/rna.2141503
Dykxhoorn, 2003, Killing the messenger, Nat. Rev. Mol. Cell Biol., 4, 457, 10.1038/nrm1129
Elbashir, 2001, RNA interference is mediated by 21 and 22 nt RNAs, Genes Dev., 15, 188, 10.1101/gad.862301
Elbashir, 2001, Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate, EMBO J., 20, 6877, 10.1093/emboj/20.23.6877
Fagard, 2000, AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals, Proc. Natl. Acad. Sci. USA, 97, 11650, 10.1073/pnas.200217597
Finnegan, 2003, The small RNA world, J. Cell Sci., 116, 4689, 10.1242/jcs.00838
Fire, 1998, Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans, Nature, 391, 806, 10.1038/35888
Grewal, 2003, Heterochromatin and epigenetic control of gene expression, Science, 301, 798, 10.1126/science.1086887
Grishok, 2001, Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Cell, 106, 23, 10.1016/S0092-8674(01)00431-7
Haley, 2004, Kinetic analysis of the RNAi enzyme complex, Nat. Struct. Mol. Biol., 11, 599, 10.1038/nsmb780
Hamilton, 2002, Two classes of short interfering RNA in RNA silencing, EMBO J., 21, 4671, 10.1093/emboj/cdf464
Hammond, 2000, An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells, Nature, 404, 293, 10.1038/35005107
Hammond, 2001, Argonaute2, a link between genetic and biochemical analyses of RNAi, Science, 293, 1146, 10.1126/science.1064023
Hannon, 2002, RNA interference, Nature, 418, 244, 10.1038/418244a
Hirotsune, 2003, An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene, Nature, 423, 91, 10.1038/nature01535
Ho, 2004, Structure and mechanism of RNA ligase, Structure (Camb), 12, 327, 10.1016/j.str.2004.01.011
Hutvágner, 2002, A microRNA in a multiple-turnover RNAi enzyme complex, Science, 297, 2056, 10.1126/science.1073827
Hutvágner, 2001, A cellular function for the RNA interference enzyme Dicer in small temporal RNA maturation, Science, 93, 834, 10.1126/science.1062961
Hutvágner, G., Simard, M.J., Mello, C.C., and Zamore, P.D. (2004). Sequence-specific inhibition of small RNA function. PLoS Biol. 2(4): e98 .
Ishizuka, 2002, A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins, Genes Dev., 16, 2497, 10.1101/gad.1022002
Jin, 2004, Biochemical and genetic interaction between the fragile X mental retardation protein and the microRNA pathway, Nat. Neurosci., 7, 113, 10.1038/nn1174
Kennerdell, 2002, RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E, Genes Dev., 16, 1884, 10.1101/gad.990802
Ketting, 1999, Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD, Cell, 99, 133, 10.1016/S0092-8674(00)81645-1
Ketting, 2001, Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans, Genes Dev., 15, 2654, 10.1101/gad.927801
Kidner, 2004, Spatially restricted microRNA directs leaf polarity through ARGONAUTE1, Nature, 428, 81, 10.1038/nature02366
Knight, 2001, A Role for the RNase III Enzyme DCR-1 in RNA Interference and Germ Line Development in C. elegans, Science, 293, 2269, 10.1126/science.1062039
Kuramochi-Miyagawa, 2004, Mili, a mammalian member of piwi family gene, is essential for spermatogenesis, Development, 131, 839, 10.1242/dev.00973
Lagos-Quintana, 2001, Identification of novel genes coding for small expressed RNAs, Science, 294, 853, 10.1126/science.1064921
Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6
Lai, 2003, microRNAs, Curr. Biol., 13, R925, 10.1016/j.cub.2003.11.017
Lee, 2002, MicroRNA maturation, EMBO J., 21, 4663, 10.1093/emboj/cdf476
Lee, 2003, The nuclear RNase III Drosha initiates microRNA processing, Nature, 425, 415, 10.1038/nature01957
Lee, 2004, Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways, Cell, 117, 69, 10.1016/S0092-8674(04)00261-2
Li, 2002, Induction and suppression of RNA silencing by an animal virus, Science, 296, 1319, 10.1126/science.1070948
Lingel, 2003, Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain, Nature, 426, 465, 10.1038/nature02123
Lingel, 2004, Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain, Nat Struct Mol Biol, 11, 576, 10.1038/nsmb777
Liu, 2003, R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway, Science, 301, 1921, 10.1126/science.1088710
Llave, 2002, Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA, Science, 297, 2053, 10.1126/science.1076311
Ma, 2004, Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain, Nature, 429, 318, 10.1038/nature02519
Malik, 2003, Isolation and functional characterization of the TRAP/mediator complex, Methods Enzymol., 364, 257, 10.1016/S0076-6879(03)64015-2
Martinez, 2002, Single-stranded antisense siRNAs guide target RNA cleavage in RNAi, Cell, 110, 563, 10.1016/S0092-8674(02)00908-X
Meister, 2002, SMN-mediated assembly of RNPs, Trends Cell Biol., 12, 472, 10.1016/S0962-8924(02)02371-1
Meister, 2004, Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing, RNA, 10, 544, 10.1261/rna.5235104
Mette, 2002, Short RNAs can identify new candidate transposable element families in Arabidopsis, Plant Physiol., 130, 6, 10.1104/pp.007047
Montgomery, 1998, RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans, Proc. Natl. Acad. Sci. USA, 95, 15502, 10.1073/pnas.95.26.15502
Morel, 2002, Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance, Plant Cell, 14, 629, 10.1105/tpc.010358
Mourelatos, 2002, miRNPs, Genes Dev., 16, 720, 10.1101/gad.974702
Mourrain, 2000, Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance, Cell, 101, 533, 10.1016/S0092-8674(00)80863-6
Okamura, K., Ishizuka, A., Siomi, H., and Siomi, M.C. (2004). Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev., Jul 1 advanced online article.
Olsen, 1999, The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation, Dev. Biol., 216, 671, 10.1006/dbio.1999.9523
Pal-Bhadra, 2002, RNAi related mechanism affect both transcriptional and posttranscriptional transgene silencing in Drosophila, Mol. Cell, 9, 315, 10.1016/S1097-2765(02)00440-9
Pal-Bhadra, 2004, Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery, Science, 303, 669, 10.1126/science.1092653
Palatnik, 2003, Control of leaf morphogenesis by microRNAs, Nature, 425, 257, 10.1038/nature01958
Park, 2002, CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana, Curr. Biol., 12, 1484, 10.1016/S0960-9822(02)01017-5
Pasquinelli, 2000, Conservation of the sequence of let-7 heterochronic regulatory RNA, Nature, 408, 86, 10.1038/35040556
Pfeffer, 2003, Cloning of small RNA molecules
Pfeffer, 2004, Identification of virus-encoded microRNAs, Science, 304, 734, 10.1126/science.1096781
Pham, 2004, A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila, Cell, 117, 83, 10.1016/S0092-8674(04)00258-2
Plasterk, 2002, RNA silencing, Science, 296, 1263, 10.1126/science.1072148
Provost, 2002, Ribonuclease activity and RNA binding of recombinant human Dicer, EMBO J., 21, 5864, 10.1093/emboj/cdf578
Reinhart, 2002, MicroRNAs in plants, Genes Dev., 16, 1616, 10.1101/gad.1004402
Reynolds, 2004, Rational siRNA design for RNA interference, Nat. Biotech., 22, 326, 10.1038/nbt936
Rober, 1990, Induction of nuclear lamins A/C in macrophages in in vitro cultures of rat bone marrow precursor cells and human blood monocytes, and in macrophages elicited in vivo by thioglycollate stimulation, Exp. Cell Res., 190, 185, 10.1016/0014-4827(90)90184-C
Sarot, 2004, Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene, Genetics, 166, 1313, 10.1534/genetics.166.3.1313
Sasaki, 2003, Identification of eight members of the Argonaute family in the human genome, Genomics, 82, 323, 10.1016/S0888-7543(03)00129-0
Scaringe, 2001, RNA oligonucleotide synthesis via 5′-silyl-2′-orthoester chemistry, Methods, 23, 206, 10.1006/meth.2000.1132
Schauer, 2002, DICER-LIKE1, Trends Plant Sci., 7, 487, 10.1016/S1360-1385(02)02355-5
Schramke, 2003, Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing, Science, 301, 1069, 10.1126/science.1086870
Schwarz, 2003, Asymmetry in the assembly of the RNAi enzyme complex, Cell, 115, 199, 10.1016/S0092-8674(03)00759-1
Seggerson, 2002, Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation, Dev. Biol., 243, 215, 10.1006/dbio.2001.0563
Sharma, 2001, Human CD34(+) stem cells express the hiwi gene, a human homologue of the Drosophila gene piwi, Blood, 97, 426, 10.1182/blood.V97.2.426
Sijen, 2003, Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi, Nature, 426, 310, 10.1038/nature02107
Smardon, 2000, EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans, Curr. Biol., 10, 169, 10.1016/S0960-9822(00)00323-7
Song, 2003, The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes, Nat. Struct. Biol., 10, 1026, 10.1038/nsb1016
Tabara, 1999, The rde-1 gene, RNA interference, and transposon silencing in C. elegans, Cell, 99, 123, 10.1016/S0092-8674(00)81644-X
Tahbaz, 2004, Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer, EMBO Rep., 5, 189, 10.1038/sj.embor.7400070
Tang, 2003, A biochemical framework for RNA silencing in plants, Genes Dev., 17, 49, 10.1101/gad.1048103
Tijsterman, 2002, The genetics of RNA silencing, Annu. Rev. Genet., 36, 489, 10.1146/annurev.genet.36.043002.091619
Tijsterman, 2002, PPW-1, a PAZ/PIWI protein required for efficient germline RNAi, is defective in a natural isolate of C. elegans, Curr. Biol., 12, 1535, 10.1016/S0960-9822(02)01110-7
Tomari, 2004, RISC assembly defects in the Drosophila RNAi mutant armitage, Cell, 116, 831, 10.1016/S0092-8674(04)00218-1
Tuschl, 1999, Targeted mRNA degradation by double-stranded RNA in vitro, Genes Dev., 13, 3191, 10.1101/gad.13.24.3191
Ullu, 2004, RNA interference in protozoan parasites, Cell. Microbiol., 6, 509, 10.1111/j.1462-5822.2004.00399.x
Vastenhouw, 2003, A genome-wide screen identifies 27 genes involved in transposon silencing in C. elegans, Curr. Biol., 13, 1311, 10.1016/S0960-9822(03)00539-6
Vaucheret, 2004, The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development, Genes Dev., 18, 1187, 10.1101/gad.1201404
Verdel, 2004, RNAi-mediated targeting of heterochromatin by the RITS complex, Science, 303, 672, 10.1126/science.1093686
Voinnet, 1999, Suppression of gene silencing, Proc. Natl. Acad. Sci. USA, 96, 14147, 10.1073/pnas.96.24.14147
Volpe, 2002, Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi, Science, 297, 1833, 10.1126/science.1074973
Waterhouse, 1998, Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA, Proc. Natl. Acad. Sci. USA, 95, 13959, 10.1073/pnas.95.23.13959
Waterhouse, 2001, Gene silencing as an adaptive defence against viruses, Nature, 411, 834, 10.1038/35081168
Wienholds, 2003, The microRNA-producing enzyme Dicer1 is essential for zebrafish development, Nat. Genet., 35, 217, 10.1038/ng1251
Williams, 2002, ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos, Proc. Natl. Acad. Sci. USA, 99, 6889, 10.1073/pnas.072190799
Wu-Scharf, 2000, Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH-Box RNA helicase, Science, 290, 1159, 10.1126/science.290.5494.1159
Xie, Z., Johansen, L.K., Gustafson, A.M., Kasschau, K.D., Lellis, A.D., Zilberman, D., Jacobsen, S.E., and Carrington, J.C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2(5): e104 .
Yan, 2003, Structure and conserved RNA binding of the PAZ domain, Nature, 426, 468, 10.1038/nature02129
Yekta, 2004, MicroRNA-directed cleavage of HOXB8 mRNA, Science, 304, 594, 10.1126/science.1097434
Yu, 2003, Post-transcriptional gene silencing in plants by RNA, Plant Cell Rep., 22, 167, 10.1007/s00299-003-0699-1
Zamore, 2000, Rnai, Cell, 101, 25, 10.1016/S0092-8674(00)80620-0
Zhang, 2002, Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP, EMBO J., 21, 5875, 10.1093/emboj/cdf582
Zhang, 2004, Single processing center models for human Dicer and bacterial RNase III, Cell, 118, 57, 10.1016/j.cell.2004.06.017
Zilberman, 2003, ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation, Science, 299, 716, 10.1126/science.1079695