Unveiling cryptic diversity of the anemonefish genera Amphiprion and Premnas (Perciformes: Pomacentridae) in Thailand with mitochondrial DNA barcodes

Allen, 1975 Allen, 1997 Carvalho, 2011, DNA barcoding unveils a high rate of mislabeling in a commercial freshwater catfish from Brazil, Mitochondrial DNA, 22, 97, 10.3109/19401736.2011.588219 Chao, 2014, Cytochrome C oxidase subunit I barcodes provide an efficient tool for Jinqian Baihua She (Bungarus parvus) authentication, Pharmacogn. Mag., 10, 449, 10.4103/0973-1296.141816 Chaves, 2008, Molecular taxonomy of Brazilian tyrant-flycatchers (Passeriformes: Tyrannidae), Mol. Ecol. Resour., 8, 1169, 10.1111/j.1755-0998.2008.02218.x Dhaneesh, 2015, Barcoding, phylogeography and species boundaries in clownfishes of the Indian Ocean, DNA Barcodes, 3, 5, 10.1515/dna-2015-0002 Drummond, 2012, Bayesian phylogenetics with BEAUti and the BEAST 1.7, Mol. Biol. Evol., 29, 1969, 10.1093/molbev/mss075 Dubey, 2011, DNA mini-barcoding: an approach for forensic identification of some endangered Indian snake species, Forensic Sci. Int. Genet., 5, 181, 10.1016/j.fsigen.2010.03.001 Elliott, 1999, Molecular phylogenetic evidence for the evolution of specialization in anemonefishes, Proc. R. Soc. Lond. B Biol. Sci., 266, 677, 10.1098/rspb.1999.0689 Feng, 2011, COI-based DNA barcoding of Arcoida species (Bivalvia: Pteriomorphia) along the coast of China, Mol. Ecol. Resour., 11, 435, 10.1111/j.1755-0998.2010.02975.x Folmer, 1994, DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates, Mol. Mar. Biol. Biotechnol., 3, 294 2000 Gaur, 2012, DNA-based identification of a snake in a wine bottle using universal primers: a case of mistaken identity, Forensic Sci. Int., 214, 51, 10.1016/j.forsciint.2011.07.045 Hebert, 2003, Biological identifications through DNA barcodes, Proc. R. Soc. Lond. B Biol. Sci., 270, 313, 10.1098/rspb.2002.2218 Hebert, 2004, Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator, Proc. Natl. Acad. Sci. U. S. A., 101, 14812, 10.1073/pnas.0406166101 Hebert, 2003, Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species, Proc. R. Soc. Lond. B Biol. Sci., 270, 96, 10.1098/rsbl.2003.0025 Huelsenbeck, 2001, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754 Ivanova, 2007, Universal primer cocktails for fish DNA barcoding, Mol. Ecol. Notes, 7, 544, 10.1111/j.1471-8286.2007.01748.x Laopichienpong, 2016, Assessment of snake DNA barcodes based on mitochondrial COI and Cytb genes revealed multiple putative cryptic species in Thailand, Gene, 594, 238, 10.1016/j.gene.2016.09.017 Lv, 2014, Assessment of four DNA fragments (COI, 16S rDNA, ITS2, 12S rDNA) for species identification of the Ixodida (Acari: Ixodida), Parasit. Vectors, 7, 93, 10.1186/1756-3305-7-93 Mahidol, 2007, Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronextes (Pectinidae), in Thailand, Mar. Biotechnol., 9, 352, 10.1007/s10126-006-6137-y Michael, 2008 Ng, 2015, Closely related and sympatric but not all the same: genetic variation of Indo-West Pacific Rhizophora mangroves across the Malay Peninsula, Conserv. Genet., 16, 137, 10.1007/s10592-014-0647-3 Nicolas, 2012, Assessment of three mitochondrial genes (16S, Cytb, COI) for identifying species in the Praomyini tribe (Rodentia: Muridae), PLoS One, 7, e36586, 10.1371/journal.pone.0036586 Pramual, 2014, DNA barcoding of tropical black flies (Diptera: Simuliidae) of Thailand, Mol. Ecol. Resour., 14, 262, 10.1111/1755-0998.12174 Pereira, 2011, DNA barcoding reveals hidden diversity in the Neotropical freshwater fish Piabina argentea (Characiformes: Characidae) from the Upper Paraná Basin of Brazil, Mitochondrial DNA, 22, 87, 10.3109/19401736.2011.588213 Pons, 2006, Sequence-based species delimitation for the DNA taxonomy of undescribed insects, Syst. Biol., 55, 595, 10.1080/10635150600852011 Puillandre, 2012, ABGD, automatic barcode gap discovery for primary species delimitation, Mol. Ecol., 21, 1864, 10.1111/j.1365-294X.2011.05239.x Rambaut, 2015 Rock, 2008, DNA barcodes of fish of the Scotia Sea, Antarctica indicate priority groups for taxonomic and systematics focus, Antarct. Sci., 20, 253, 10.1017/S0954102008001120 Rubinoff, 2006, A genomic perspective on the shortcomings of mitochondrial DNA for “Barcoding” identification, J. Hered., 97, 581, 10.1093/jhered/esl036 Saengkaew, 2016, Cryptic diversity of the mangrove-associated alga Bostrychia (Rhodomelaceae, Rhodophyta) from Thailand, Bot. Mar., 59, 363, 10.1515/bot-2016-0040 Sanchez, 2016, Evaluation of the 5′ end of the 16S rRNA gene as a DNA barcode marker for the Cephalopoda, Fish. Sci., 82, 279, 10.1007/s12562-015-0962-8 Sevilla, 2007, Primers and polymerase chain reaction conditions for DNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes, Mol. Ecol. Notes, 7, 730, 10.1111/j.1471-8286.2007.01863.x Smith, 2008, DNA barcoding for the identification of smoked fish products, J. Fish. Biol., 72, 464, 10.1111/j.1095-8649.2007.01745.x Steinke, 2009, DNA barcoding of Pacific Canada's fishes, Mar. Biol., 156, 2641, 10.1007/s00227-009-1284-0 Steinke, 2009, Barcoding Nemo: DNA-based identifications for the Ornamental Fish Trade, PLoS One, 4, e6300, 10.1371/journal.pone.0006300 Supikamolseni, 2015, Molecular barcoding of venomous snakes and species-specific multiplex PCR assay to identify snake groups for which antivenom is available in Thailand, Genet. Mol. Res., 14, 13981, 10.4238/2015.October.29.18 Swofford, 2003 Tamura, 2013, MEGA6: molecular evolutionary genetics analysis, Mol. Biol. Evol., 30, 2725, 10.1093/molbev/mst197 Tanabe, 2007, Kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data, Mol. Ecol. Notes, 7, 962, 10.1111/j.1471-8286.2007.01807.x Tanabe, 2008 Timm, 2008, Contrasting patterns in species boundaries and evolution of anemonefishes (Amphiprioninae, Pomacentridae) in the centre of marine biodiversity, Mol. Phylogenet. Evol., 49, 268, 10.1016/j.ympev.2008.04.024 Xia, 2012, COI is better than 16S rRNA for DNA barcoding Asiatic salamanders (Amphibia: Caudata: Hynobiidae), Mol. Ecol. Resour., 12, 48, 10.1111/j.1755-0998.2011.03055.x Zhang, 2012, Molecular approach to the identification of fish in the South China Sea, PLoS One, 7, e30621, 10.1371/journal.pone.0030621 Zhang, 2013, A general species delimitation method with applications to phylogenetic placements, Bioinformatics, 29, 2869, 10.1093/bioinformatics/btt499 Hubert, 2008, Identifying Canadian freshwater fishes through DNA barcodes, PLoS One, 3, e2490, 10.1371/journal.pone.0002490