Using BLAST for identifying gene and protein names in journal articles

Gene - Tập 259 - Trang 245-252 - 2000
Michael Krauthammer1, Andrey Rzhetsky1,2, Pavel Morozov2, Carol Friedman1,3
1Department of Medical Informatics, Columbia University, New York, NY, USA
2Columbia Genome Center, Columbia University, New York, NY, USA
3Department of Computer Science, Queens College CUNY, New York, NY, USA

Tài liệu tham khảo

Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Benson, 1998, GenBank, Nucleic Acids Res., 26, 1, 10.1093/nar/26.1.1 Christiansen, 1998 Crick, 1957, Codes without commas, 416 Friedman, 1997, Towards a comprehensive medical language processing system: methods and issues, Proc. AMIA Ann. Fall Symp., 595 Fukuda, 1998, Toward information extraction: identifying protein names from biological papers, Pac. Symp. Biocomput., 707 Gusfield, 1997 Hripcsak, 1995, Unlocking clinical data from narrative reports: a study of natural language processing (see comments), Ann. Intern. Med., 122, 681, 10.7326/0003-4819-122-9-199505010-00007 Koike, 2000, A graphic editor for analyzing signal transduction pathways, Gene, 10.1016/S0378-1119(00)00458-3 Nei, 1987 Rindflesch, 1999, Mining molecular binding terminology from biomedical text, Proc. AMIA Symp., 127 Rzhetsky, 2000, A knowledge model for analysis and simulation of regulatory networks, Bioinformatics, 10.1093/bioinformatics/16.12.1120 States, 1991, Improved sensitivity of nucleic acid database searches using application-specific scoring matrices, Methods Enzymol., 3, 66, 10.1016/S1046-2023(05)80165-3 Will, 1994, Comparing human and machine performance for natural language information evaluation, 53 Yerushalmy, 1969, The statistical assessment of the variability in observer perception and description of roentgenographic pulmonary shadows, Radiol. Clin. North Am., 7, 381, 10.1016/S0033-8389(22)01511-1