Selective epigenetic control of retrotransposition in Arabidopsis

Nature - Tập 461 Số 7262 - Trang 427-430 - 2009
Marie Mirouze1, Jon Reinders1, Etienne Bucher1, Taisuke Nishimura1, Korbinian Schneeberger2, Stephan Ossowski2, Jun Cao2, Detlef Weigel2, Jerzy Paszkowski1, Olivier Mathieu3,1
1Department of Plant Biology, University of Geneva, Sciences III, 30 Quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland
2Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany
3Centre National de la Recherche Scientifique (CNRS), UMR 6247, GReD, INSERM U 931, 24 avenue des Landais, Clermont Université, 63177 Aubière, France

Tóm tắt

Từ khóa


Tài liệu tham khảo

Slotkin, R. K. & Martienssen, R. A. Transposable elements and the epigenetic regulation of the genome. Nature Rev. Genet. 8, 272–285 (2007)

Beauregard, A., Curcio, M. J. & Belfort, M. The take and give between retrotransposable elements and their hosts. Annu. Rev. Genet. 42, 587–617 (2008)

Goodier, J. L. & Kazazian, H. H. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135, 23–35 (2008)

Zhang, X. et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis . Cell 126, 1189–1201 (2006)

Saze, H., Mittelsten Scheid, O. & Paszkowski, J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nature Genet. 34, 65–69 (2003)

Lister, R. et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis . Cell 133, 523–536 (2008)

Pontier, D. et al. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis . Genes Dev. 19, 2030–2040 (2005)

Wierzbicki, A. T., Haag, J. R. & Pikaard, C. S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135, 635–648 (2008)

Reinders, J. et al. Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. Genes Dev. 23, 939–950 (2009)

Hirochika, H., Okamoto, H. & Kakutani, T. Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12, 357–369 (2000)

Matzke, M. A., Kanno, T., Huettel, B., Daxinger, L. & Matzke, A. J. Targets of RNA-directed DNA methylation. Curr. Opin. Plant Biol. 10, 512–519 (2007)

Brodersen, P. et al. Widespread translational inhibition by plant miRNAs and siRNAs. Science 320, 1185–1190 (2008)

Slotkin, R. K. et al. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136, 461–472 (2009)

Mathieu, O., Reinders, J., Caikovski, M., Smathajitt, C. & Paszkowski, J. Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation. Cell 130, 851–862 (2007)

Jackson, J. P. et al. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana . Chromosoma 112, 308–315 (2004)

Ding, Y. et al. SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19, 9–22 (2007)

Chuikov, S. et al. Regulation of p53 activity through lysine methylation. Nature 432, 353–360 (2004)

Kouskouti, A., Scheer, E., Staub, A., Tora, L. & Talianidis, I. Gene-specific modulation of TAF10 function by SET9-mediated methylation. Mol. Cell 14, 175–182 (2004)

Sampath, S. C. et al. Methylation of a histone mimic within the histone methyltransferase G9a regulates protein complex assembly. Mol. Cell 27, 596–608 (2007)

Jackson, J. P., Lindroth, A., Cao, X. & Jacobsen, S. E. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416, 556–560 (2002)

Cao, X. et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr. Biol. 13, 2212–2217 (2003)

Zhang, X. & Jacobsen, S. E. Genetic analyses of DNA methyltransferases in Arabidopsis thaliana . Cold Spring Harb. Symp. Quant. Biol. 71, 439–447 (2006)

Miura, A. et al. Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis . Nature 411, 212–214 (2001)

Tsukahara, S. et al. Burst of retrotransposition reproduced in Arabidopsis . Nature 10.1038/nature08351 (this issue)

Mathieu, O., Probst, A. & Paszkowski, J. Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis . EMBO J. 24, 2783–2791 (2005)

Chan, S. W. et al. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis . PLoS Genet. 2, e83 (2006)

Onodera, Y. et al. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120, 613–622 (2005)

Reinders, J. et al. Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion. Genome Res. 18, 469–476 (2008)

Pall, G. S., Codony-Servat, C., Byrne, J., Ritchie, L. & Hamilton, A. Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic Acids Res. 35, e60 (2007)

Kanno, T. et al. A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nature Genet. 40, 670–675 (2008)

Ossowski, S. et al. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res. 18, 2024–2033 (2008)

The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana . Nature 408, 796–815 (2000)