Exploratory disease mapping: kriging the spatial risk function from regional count data

Springer Science and Business Media LLC - Tập 3 - Trang 1-11 - 2004
Olaf Berke1,2
1Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Canada
2Department of Biometry, Epidemiology and Information Processing,, School of Veterinary Medicine Hannover,, Hannover,, Germany

Tóm tắt

There is considerable interest in the literature on disease mapping to interpolate estimates of disease occurrence or risk of disease from a regional database onto a continuous surface. In addition to many interpolation techniques available the geostatistical method of kriging has been used but also criticised. To circumvent these critics one may use kriging along with already smoothed regional estimates, where smoothing is based on empirical Bayes estimates, also known as shrinkage estimates. The empirical Bayes step has the advantage of shrinking the unstable and often extreme estimates to the global or local mean, and also has a stabilising effect on variance by borrowing strength, as well. Negative interpolates are prevented by choice of the appropriate kriging method. The proposed mapping method is applied to the North Carolina SIDS data example as well as to an example data set from veterinary epidemiology. The SIDS data are modelled without spatial trend. And spatial interpolation is based on ordinary kriging. The second example is included to demonstrate the method when the phenomenon under study exhibits a spatial trend and interpolation is based on universal kriging. Interpolation of the regional estimates overcomes the areal bias problem and the resulting isopleth maps are easier to read than choropleth maps. The empirical Bayesian estimate for smoothing is related to internal standardization in epidemiology. Therefore, the proposed concept is easily communicable to map users.

Tài liệu tham khảo

Berke O: Estimation and prediction in the spatial linear model. Water, Air, and Soil Pollution. 1999, 110: 215-237. 10.1023/A:1005035509922. Berke O: Modified median polish kriging and its application to the Wolfcamp-Aquifer data. Environmetrics. 2001, 12: 731-748. 10.1002/env.495.abs. Berke O: Choropleth mapping of regional count data of Echinococcus multilocularis among red foxes in Lower Saxony, Germany. Preventive Veterinary Medicine. 2001, 52: 119-131. 10.1016/S0167-5877(01)00246-X. Berke O, von Keyserlingk M, Broll S, Kreienbrock L: Zum Vorkommen von Echinococcus multilocularis bei Rotfüchsen in Niedersachsen: Identifikation eines Hochrisikogebietes mit Methoden der räumlichen epidemiologischen Clusteranalyse. Berl Munch Tierarztl Wochenschr. 2002, 115: 428-434. Besag J, York J, Mollié A: Bayesian image restoration with applications in spatial statistics (with discussion). Annals of the Institute of Statistical Mathematics. 1991, 43: 1-59. Bithell J: An application of density estimation to geographical epidemiology. Statistics in Medicine. 1990, 9: 691-701. Bithell J: A classification of disease mapping methods. Statistics in Medicine. 2000, 19: 2203-2215. 10.1002/1097-0258(20000915/30)19:17/18<2203::AID-SIM564>3.0.CO;2-U. Brillinger DR: Spatio-temporal modelling of spatially aggregate birth data. Survey Methodology. 1990, 16: 255-269. Carlin BP, Louis TA: Bayes and Empirical Bayes Methods for Data Analysis. 2000, London, Chapman and Hall, 2 Carrat F, Valleron AJ: Epidemiologic mapping using the "kriging" method: Application to an influenza-like epidemic in France. American Journal of Epidemiology. 1992, 135: 1293-1300. Clayton D, Kaldor J: Empirical Bayes estimates of age-standardized relative risks for use in disease mapping. Biometrics. 1987, 43: 671-681. Cressie N: Statistics for Spatial Data. 1993, New York, Wiley, rev Cressie N, Read TRC: Spatial Data analysis of regional counts. Biometrical Journal. 1989, 31: 699-719. Diggle PJ: Overview of statistical methods for disease mapping and its relationship to cluster detection. In: Spatial Epidemiology: Methods and Applications. Edited by: Elliot P, Wakefield JC, Best NG, Briggs DJ. 2000, Oxford, Oxford University Press, 87-103. Diggle PJ, Tawn JA, Moyeed RA: Model-based geostatistics (with discussion). Applied Statistics. 1998, 47: 299-350. 10.1111/1467-9876.00113. Eckert J, Gemmell M, Meslin FX, Pawlowski Z: WHO / OIE Manual on Echinococcosis in Humans and Animals: a Public Health Problem of Global Concern. 2001, Paris, OIE Elliot P, Wakefield JC, Best NG, Briggs DJ: Spatial Epidemiology: Methods and Applications. 2000, Oxford, Oxford University Press Garcia-Soidan PH, Hall P: On sample re-use methods for spatial data. Biometrics. 1997, 53: 273-281. Kafadar K: Simultaneous smoothing and adjusting mortality rates in U.S. counties: melanoma in white females and white males. Statistics in Medicine. 1999, 18: 3167-3188. 10.1002/(SICI)1097-0258(19991215)18:23<3167::AID-SIM308>3.0.CO;2-N. Kellsall J, Diggle PJ: Non-parametric estimation of spatial variation in risk. Statistics in Medicine. 1995, 14: 2335-2342. Kelsall J, Wakefield J: Modelling spatial variation in disease risk: a geostatistical approach. Journal of the American Statistical Association. 2002, 97: 692-701. 10.1198/016214502388618438. Kulldorff M: A spatial scan statistic. Communications in Statistics: Theory and Methods. 1997, 26: 1481-1496. Lajaunie C: Local risk estimation for a rare non contagious disease based on observed frequencies. Note N-36/91/G. Fotainebleau: Centre de Géostatistique, École des Mines de Paris. 1991 Lawson AB: Statistical Methods in Spatial Epidemiology. 2001, Chichester, Wiley Lawson AB: Tutorial in biostatistics: disease map reconstruction. Statistics in Medicine. 2001, 20: 2183-2203. 10.1002/sim.933. Lawson AB, Biggeri A, Böhning D, Lesaffre E, Viel JF, Clark A, Schlattmann P, Divino F: Disease mapping models: an empirical evaluation. Statistics in Medicine. 2000, 19: 2217-2242. 10.1002/1097-0258(20000915/30)19:17/18<2217::AID-SIM565>3.0.CO;2-E. Lawson AB, Clark A: Spatial mixture relative risk models applied to disease mapping. Statistics in Medicine. 2002, 21: 359-370. 10.1002/sim.1022. Lawson AB, Williams F: Application of extraction mapping in environmental epidemiology. Statistics in Medicine. 1993, 12: 1249-1258. Marshall R: Mapping disease and mortality rates using empirical Bayes estimators. Applied Statistics. 1991, 40: 283-294. Martuzzi M, Elliott P: Empirical Bayes estimation of small area prevalence of non-rare conditions. Statistics in Medicine. 1996, 15: 1867-1873. 10.1002/(SICI)1097-0258(19960915)15:17<1867::AID-SIM398>3.3.CO;2-U. McNeill L: Interpolation and smoothing of binomial data for the Southern African Bird Atlas Project. South African Statistical Journal. 1991, 25: 129-136. Morris CN: Parametric empirical Bayes inference: theory and applications. Journal of the American Statistical Association. 1983, 78: 47-55. Müller HG, Stadtmüller U, Tabnak F: Spatial smoothing of geographically aggregated data, with application to the construction of incidence maps. Journal of the American Statistical Association. 1997, 92: 61-71. Oliver MA, Muir KR, Webster R, Parkes SE, Cameron AH, Stevens MCG, Mann JR: A geostatistical approach to the analysis of pattern in rare disease. Journal of Public Health Medicine. 1992, 14: 280-289. Oliver MA, Webster R, Lajaunie C, Muir KR: Binomial cokriging for estimating and mapping the risk of childhood cancer. Journal of Mathematics Applied in Medicine and Biology. 1998, 15: 279-297. Smans M, Estève J: Practical approaches to disease mapping. In: Geographical and Environmental Epidemiology: Methods for Small-Area Studies. Edited by: Elliott P, Cuzick J, English D, Stern R. 1992, Oxford, Oxford University Press, 141-150. Wackernagel H: Multivariate Geostatistics. 1998, Berlin, Springer, 2 Webster R, Oliver MA, Muir KR, Mann JR: Kriging the local risk of a rare disease from a register of diagnoses. Geographical Analysis. 1994, 26: 168-185.