DNA Commission of the International Society of Forensic Genetics (ISFG): An update of the recommendations on the use of Y-STRs in forensic analysis

Gomez, 2000, The 1998–1999 collaborative exercises and proficiency testing program on DNA typing of the Spanish and Portuguese Working Group of the International Society for Forensic Genetics (GEP-ISFG), Forensic Sci. Int., 114, 21, 10.1016/S0379-0738(00)00288-7 Gill, 2001, DNA Commission of the International Society of Forensic Genetics: recommendations on forensic analysis using Y-chromosome STRs, Forensic Sci. Int., 124, 5, 10.1016/S0379-0738(01)00498-4 White, 1999, New, male-specific microsatellite markers from the human Y chromosome, Genomics, 57, 433, 10.1006/geno.1999.5782 Ayub, 2000, Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database information, Nucl. Acids Res., 28, 2, 10.1093/nar/28.2.e8 González-Neira, 2001, Sequence structure of 12 novel Y chromosome microsatellites and PCR amplification strategies, Forensic Sci. Int., 122, 19, 10.1016/S0379-0738(01)00405-4 Hou, 2001, Allele sequences of six new Y-STR loci and haplotypes in the Chinese Han population, Forensic Sci. Int., 118, 153, 10.1016/S0379-0738(01)00383-8 Gusmão, 2002, Chimpanzee homologous of human Y specific STRs. A comparative study and a proposal for nomenclature, Forensic Sci. Int., 126, 129, 10.1016/S0379-0738(02)00046-4 Gill, 1997, Considerations from the European DNA profiling group (EDNAP) concerning STR nomenclature, Forensic Sci. Int., 87, 185, 10.1016/S0379-0738(97)00111-4 Olaisen, 1998, DNA recommendations 1997 of the International Society for Forensic Genetics, Vox Sang., 74, 61, 10.1046/j.1423-0410.1998.7410061.x Skaletsky, 2003, The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes, Nature, 423, 825, 10.1038/nature01722 Kayser, 1997, Evaluation of Y-chromosomal STRs: a multicenter study, Int. J. Legal Med., 110, 125, 10.1007/s004140050051 Schneider, 1998, Tandem repeat structure of the duplicated Y-chromosomal STR locus DYS385 and frequency studies in the German and three Asian populations, Forensic Sci. Int., 97, 61, 10.1016/S0379-0738(98)00146-7 Kittler, 2003, Apparent intra-chromosomal exchange on the human Y chromosome explained by population history, Eur. J. Hum. Genet., 11, 304, 10.1038/sj.ejhg.5200960 Kayser, 2000, Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs, Am. J. Hum. Genet., 66, 1580, 10.1086/302905 Bosch, 2003, Duplications of the AZFa region of the human Y chromosome are mediated by homologous recombination between HERVs and are compatible with male fertility, Hum. Mol. Genet., 12, 341, 10.1093/hmg/ddg031 M. Diederiche, P. Martín, A. Amorim, F. Corte-Real, L. Gusmão, A case of double alleles at three Y-STR loci: forensic implications, Int. J. Legal Med., in press. YHRD, Y Chromosome Haplotype Reference Database. http://www.yhrd.org/. NIST, National Institute of Standards and Technology, STRBase website http://www.cstl.nist.gov/div831/strbase/y_strs.htm. Butler, 2003, Recent developments in Y-short tandem repeat and Y-single nucleotide polymorphism analysis, Forensic Sci. Rev., 15, 91 Thomson, 2000, Recent common ancestry of human Y chromosomes: evidence from DNA sequence data, Proc. Natl. Acad. Sci. U.S.A., 97, 7360, 10.1073/pnas.97.13.7360 Dupuy, 2004, Y-chromosomal microsatellite mutation rates: differences in mutation rate between and within loci, Hum. Mutat., 23, 117, 10.1002/humu.10294 Gusmão, 2002, Genetic diversity of Y-specific STRs in chimpanzees (Pan troglodytes), Am. J. Primatol., 57, 21, 10.1002/ajp.1084 Erler, 2004, Development of Y-chromosomal microsatellite markers for nonhuman primates, Mol. Ecol., 13, 2921, 10.1111/j.1365-294X.2004.02304.x Kayser, 2004, A comprehensive survey of human Y-chromosomal microsatellites, Am. J. Hum. Genet., 74, 1183, 10.1086/421531 Reliagene, Y-STR Haplotype Reference Database for U.S. Populations. http://www.reliagene.com. Promega Corporation, PowerPlex® Y Haplotype Database. http://www.promega.com/techserv/tools/pplexy/. Füredi, 1999, Y-STR haplotyping in two Hungarian populations, Int. J. Legal Med., 113, 38, 10.1007/s004140050276 Butler, 2002, A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers, Forensic Sci. Int., 129, 10, 10.1016/S0379-0738(02)00195-0 Schoske, 2004, High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays, Forensic Sci. Int., 139, 107, 10.1016/j.forsciint.2003.10.007 Carracedo, 2000, DNA Commission of the International Society for Forensic Genetics: guidelines for mitochondrial DNA typing, Forensic Sci. Int., 110, 79, 10.1016/S0379-0738(00)00161-4 Gusmão, 2002, Point mutations in the flanking regions of the Y-chromosome specific STRs DYS391, DYS437 and DYS438, Int. J. Legal Med., 116, 322, 10.1007/s00414-002-0310-2 J. Butler, Personal communication to the IV International Y-User Workshop. Roewer, 1992, Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts, Hum. Genet., 89, 389, 10.1007/BF00194309 Mathias, 1994, Highly informative compound haplotypes for the human Y chromosome, Hum. Mol. Genet., 3, 115, 10.1093/hmg/3.1.115 Chen, 1994, Homologous loci DXYS156X and DXYS156Y contain a polymorphic pentanucleotide repeat (TAAAA)n and map to human X and Y chromosomes, Hum. Mutat., 4, 208, 10.1002/humu.1380040306 Jobling, 1996, Recurrent duplication and deletion polymorphisms on the long arm of the Y chromosome in normal males, Hum. Mol. Genet., 5, 1767, 10.1093/hmg/5.11.1767 Iida, 2001, Identification and characterization of two novel human polymorphic STRs on the Y chromosome, Int. J. Legal Med., 115, 54, 10.1007/s004140100207 Iida, 2002, Characterization and haplotype analysis of the polymorphic Y-STRs DYS443, DYS444 and DYS445 in a Japanese population, Int. J. Legal Med., 116, 191, 10.1007/s00414-001-0266-7 Redd, 2002, Forensic value of 14 novel STRs on the human Y chromosome, Forensic Sci. Int., 130, 97, 10.1016/S0379-0738(02)00347-X Bosch, 2002, High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions, Forensic Sci. Int., 125, 42, 10.1016/S0379-0738(01)00627-2 Mohyuddin, 2004, Genetic instability in EBV-transformed lymphoblastoid cell lines, Biochim. Biophys. Acta, 1670, 81, 10.1016/j.bbagen.2003.10.014 Beleza, 2003, Extending STR markers in Y chromosome haplotypes, Int. J. Legal Med., 117, 27, 10.1007/s00414-002-0317-8 Brinkmann, 1998, Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat, Am. J. Hum. Genet., 62, 1408, 10.1086/301869 Roewer, 2000, A new method for the evaluation of matches in non-recombining genomes: application to Y-chromosomal short tandem repeat (STR) haplotypes in European males, Forensic Sci. Int., 114, 31, 10.1016/S0379-0738(00)00287-5 Krawczak, 2001, Forensic evaluation of Y-STR haplotype matches: a comment, Forensic Sci. Int., 118, 114, 10.1016/S0379-0738(00)00479-5 Applied Biosystems, YFiler Haplotype Database. http://www.appliedbiosystems.com/yfilerdatabase. Kayser, 2002, Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for U.S. populations, J. Forensic Sci., 47, 513, 10.1520/JFS15290J Kayser, 2003, Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry, Genome Res., 13, 624, 10.1101/gr.463003 Roewer, 2001, Online reference database of European Y-chromosomal short tandem repeat (STR) haplotypes, Forensic Sci. Int., 118, 106, 10.1016/S0379-0738(00)00478-3 Ploski, 2002, Homogeneity and distinctiveness of Polish paternal lineages revealed by Y chromosome microsatellite haplotype analysis, Hum. Genet., 110, 592, 10.1007/s00439-002-0728-0 Roewer, 2005, Signature of recent historical events in the European Y-chromosomal STR haplotype distribution, Hum. Genet., 116, 279, 10.1007/s00439-004-1201-z De Knijff, 1997, Chromosome Y microsatellites: population genetic and evolutionary aspects, Int. J. Legal Med., 110, 134, 10.1007/s004140050052 Dai, 2004, Characterization and haplotype analysis of 10 novel Y-STR loci in Chinese Han population, Forensic Sci. Int., 145, 47, 10.1016/j.forsciint.2004.03.009 Schmidt, 2003, Y-chromosomal STR haplotypes in a population sample from southwest Germany (Freiburg area), Int. J. Legal Med., 117, 211, 10.1007/s00414-003-0373-8 Butler, 2006, Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African–American and Hispanic samples, Forensic Sci. Int., 156, 250, 10.1016/j.forsciint.2005.02.011