Regional distribution of two related Northeast Asian genotypes of JC virus, CY-a and -b: implications for the dispersal of Northeast Asians
Tài liệu tham khảo
Cole, 2001, 2141
Padgett, 1973, Prevalence of antibodies in human sera against JC virus, an isolate from a case of progressive multifocal leukoencephalopathy, J. Infect. Dis., 127, 467, 10.1093/infdis/127.4.467
Walker, 1983, The epidemiology of human polyomaviruses, Prog. Clin. Biol. Res., 105, 99
Chesters, 1983, Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues, J. Infect. Dis., 147, 676, 10.1093/infdis/147.4.676
Tominaga, 1992, Persistence of archetypal JC virus DNA in normal renal tissue derived from tumor-bearing patients, Virology, 186, 736, 10.1016/0042-6822(92)90040-V
Kitamura, 1997, Persistent JC virus (JCV) infection is demonstrated by continuous shedding of the same JCV strains, J. Clin. Microbiol., 35, 1255, 10.1128/jcm.35.5.1255-1257.1997
Kitamura, 1990, High incidence of urinary JC virus excretion in nonimmunosuppressed older patients, J. Infect. Dis., 161, 1128, 10.1093/infdis/161.6.1128
Kitamura, 1994, Transmission of the human polyomavirus JC virus occurs both within the family and outside the family, J. Clin. Microbiol., 32, 2359, 10.1128/jcm.32.10.2359-2363.1994
Agostini, 1996, Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals, J. Clin. Microbiol., 34, 159, 10.1128/jcm.34.1.159-164.1996
Daniel, 1981, Serological investigation of the possibility of congenital transmission of papovavirus JC, Infect. Immun., 33, 319, 10.1128/iai.33.1.319-321.1981
Kunitake, 1995, Parent-to-child transmission is relatively common in the spread of the human polyomavirus JC virus, J. Clin. Microbiol., 33, 1448, 10.1128/jcm.33.6.1448-1451.1995
Suzuki, 2002, Asian genotypes of JC virus in Japanese-Americans suggest familial transmission, J. Virol., 76, 10074, 10.1128/JVI.76.19.10074-10078.2002
Zheng, 2004, Unambiguous identification of JC polyomavirus strains transmitted from parents to children, Arch. Virol., 149, 261, 10.1007/s00705-003-0214-6
Kato, 1997, Lack of evidence for the transmission of JC polyomavirus between human populations, Arch. Virol., 142, 875, 10.1007/s007050050125
Major, 2001, 2175
Agostini, 2001, 491
Sugimoto, 1997, Typing of urinary JC virus DNA offers a novel means of tracing human migrations, Proc. Natl. Acad. Sci. USA, 94, 9191, 10.1073/pnas.94.17.9191
Agostini, 2001, Genotypes of JC virus in East, Central and Southwest Europe, J. Gen. Virol., 82, 1221, 10.1099/0022-1317-82-5-1221
Agostini, 1997, Five complete genomes of JC virus type 3 from Africans and African Americans, Arch. Virol., 142, 637, 10.1007/s007050050108
Chima, 1998, Molecular epidemiology of human polyomavirus JC in the Biaka Pygmies and Bantu of Central Africa, Mem. Inst. Oswaldo. Cruz., 93, 615, 10.1590/S0074-02761998000500010
Guo, 1998, Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia: implications for the racial composition of modern China, J. Gen. Virol., 79, 2499, 10.1099/0022-1317-79-10-2499
Guo, 2001, JC virus genotypes in northwestern China: implications for its population history, Anthropol. Sci., 109, 203, 10.1537/ase.109.203
Kitamura, 1998, Peopling of Japan as revealed by genotyping of urinary JC virus DNA, Anthropol. Sci., 106, 311, 10.1537/ase.106.311
Saruwatari, 2002, Asian domains of four major genotypes of JC virus, Af2, B1-b, CY and SC, Arch. Virol., 147, 1, 10.1007/s705-002-8299-4
Saruwatari, 2002, Peopling of Myanmar as demonstrated by genotyping of urinary JC virus DNA, Anthropol. Sci., 110, 235, 10.1537/ase.110.235
Miranda, 2003, Genetic diversity of JC virus in the modern Filipino population: implications for the peopling of the Philippines, Am. J. Phys. Anthropol., 120, 125, 10.1002/ajpa.10155
Sugimoto, 2002, JC virus strains indigenous to northeastern Siberians and Canadian Inuits are unique but evolutionally related to those distributed throughout Europe and Mediterranean areas, J. Mol. Evol., 55, 322, 10.1007/s00239-001-2329-2
Jobes, 2001, New JC virus (JCV) genotypes from Papua New Guinea and Micronesia (type 8 and type 2E) and evolutionary analysis of 32 complete JCV genomes, Arch. Virol., 146, 2097, 10.1007/s007050170023
Yanagihara, 2002, JC virus genotypes in the western Pacific suggest Asian mainland relationships and virus association with early population movements, Hum. Biol., 74, 473, 10.1353/hub.2002.0037
Agostini, 1997, Asian genotypes of JC virus in Native Americans and in a Pacific Island population: markers of viral evolution and human migration, Proc. Natl. Acad. Sci. USA, 94, 14542, 10.1073/pnas.94.26.14542
Fernandez-Cobo, 2002, Strains of JC virus in Amerind-speakers of North America (Salish) and South America (Guarani), Na-Dene-speakers of New Mexico (Navajo), and modern Japanese suggest links through an ancestral Asian population, Am. J. Phys. Anthropol., 118, 154, 10.1002/ajpa.10085
Zheng, 2003, Phylogenetic relationships among JC virus strains in Japanese/Koreans and Native Americans speaking Amerind or Na-Dene, J. Mol. Evol., 56, 18, 10.1007/s00239-002-2376-3
Sugimoto, 2002, Evolution of human polyomavirus JC: implications for the population history of humans, J. Mol. Evol., 54, 285, 10.1007/s00239-001-0009-x
Jobes, 1998, Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus, J. Gen. Virol., 79, 2491, 10.1099/0022-1317-79-10-2491
Hatwell, 2000, Evolution of human polyomavirus JC, J. Gen. Virol., 81, 1191
Pavesi, 2003, African origin of polyomavirus JC and implications for prehistoric human migrations, J. Mol. Evol., 56, 564, 10.1007/s00239-002-2425-y
Stoner, 2000, JC virus as a marker of human migration to the Americas, Microbes Infect., 2, 1905, 10.1016/S1286-4579(00)01339-3
Disotell, 2003, Discovering human history from stomach bacteria, Genome Biol., 4, 213, 10.1186/gb-2003-4-5-213
Wooding, 2001, Do human and JC virus genes show evidence of host–parasite codemography?, Infect. Genet. Evol., 1, 3, 10.1016/S1567-1348(01)00002-8
Ault, 1992, Two major types of JC virus defined in progressive multifocal leukoencephalopathy brain by early and late coding region DNA sequences, J. Gen. Virol., 73, 2669, 10.1099/0022-1317-73-10-2669
Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406
Kato, 2000, Lack of disease-specific amino acid changes in the viral proteins of JC virus isolates from the brain with progressive multifocal leukoencephalopathy, Arch. Virol., 145, 2173, 10.1007/s007050070047
Yogo, 1991, Sequence rearrangement in JC virus DNAs molecularly cloned from immunosuppressed renal transplant patients, J. Virol., 65, 2422, 10.1128/jvi.65.5.2422-2428.1991
Guo, 1996, Geographical distribution of the human polyomavirus JC virus types A and B and isolation of a new type from Ghana, J. Gen. Virol., 77, 919, 10.1099/0022-1317-77-5-919
Yogo, 2001, 127
Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673
Kimura, 1980, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J. Mol. Evol., 16, 111, 10.1007/BF01731581
Page, 1996, TREEVIEW: an application to display phylogenetic trees on personal computers, Comp. Appl. Biosci., 12, 357
Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678
Hosmer, 2000
McCullagh, 1989
Dodo, 1990, Population history of Japan as viewed from cranial nonmetric variation, Anthropol. Sci., 98, 269
Hanihara, 1991, Dual structure model for the population history of the Japanese, Japan Rev., 2, 1
Tokunaga, 1995, 193
Horai, 1996, mtDNA polymorphism in East Asian populations, with special reference to the peopling of Japan, Am. J. Hum. Genet., 59, 579
Jeong, 2004, Genotyping of the JC virus in urine samples of healthy Korean individuals, J. Med. Virol., 72, 281, 10.1002/jmv.10568
Jobling, 2003, The human Y chromosome: an evolutionary marker comes of age, Nat. Rev. Genet., 4, 598, 10.1038/nrg1124
Karafet, 2001, Paternal population history of East Asia: sources, patterns, and microevolutionary processes, Am. J. Hum. Genet., 69, 615, 10.1086/323299
Chu, 1998, Genetic relationship of populations in China, Proc. Natl. Acad. Sci. USA, 95, 11763, 10.1073/pnas.95.20.11763
Yogo, 1990, Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals, J. Virol., 64, 3139, 10.1128/jvi.64.6.3139-3143.1990
Kato, 1994, Phylogenetic comparison between archetypal and disease-associated JC virus isolates in Japan, Jpn. J. Med. Sci. Biol., 47, 167, 10.7883/yoken1952.47.167