CRISPR-Cas fluorescent cleavage assay coupled with recombinase polymerase amplification for sensitive and specific detection of Enterocytozoon hepatopenaei
Tài liệu tham khảo
Chayaburakul, 2004, Multiple pathogens found in growth-retarded black tiger shrimp Penaeus monodon cultivated in Thailand, Dis. Aquat. Org. Dis Aquat Org., 60, 89, 10.3354/dao060089
Anderson, 1989, A hepatopancreatic microsporidian in pond-reared tiger shrimp, Penaeus monodon, from Malaysia, J. Invertebr. Pathol., 53, 278, 10.1016/0022-2011(89)90020-7
Hudson, 2001, Mortalities of Penaeus japonicus prawns associated with microsporidean infection, Aust. Vet. J., 79, 504, 10.1111/j.1751-0813.2001.tb13027.x
Tourtip, 2009, Enterocytozoon hepatopenaei sp. Nov. (Microsporida: enterocytozoonidae), a parasite of the black tiger shrimp Penaeus monodon (Decapoda: penaeidae): fine structure and phylogenetic relationships, J. Invertebr. Pathol., 10.1016/j.jip.2009.06.004
Tangprasittipap, 2013, The microsporidian Enterocytozoon hepatopenaei is not the cause of white feces syndrome in whiteleg shrimp Penaeus (Litopenaeus) vannamei, BMC Vet. Res., 9, 139, 10.1186/1746-6148-9-139
Thitamadee, 2016, Review of current disease threats for cultivated penaeid shrimp in Asia, Aquaculture, 452, 69, 10.1016/j.aquaculture.2015.10.028
Liu, 2018, Quantitative detection method of Enterocytozoon hepatopenaei using TaqMan probe real-time PCR, J. Invertebr. Pathol., 151, 191, 10.1016/j.jip.2017.12.006
Rajendran, 2016, Emergence of Enterocytozoon hepatopenaei (EHP) in farmed Penaeus (Litopenaeus) vannamei in India, Aquaculture., 454, 272, 10.1016/j.aquaculture.2015.12.034
Sanguanrut, 2018, A cohort study of 196 Thai shrimp ponds reveals a complex etiology for early mortality syndrome (EMS), Aquaculture, 493, 26, 10.1016/j.aquaculture.2018.04.033
Shinn, 2018, Asian shrimp production and the economic costs of disease, Asian Fish. Sci., 31, 29
Suebsing, 2013, Loop-mediated isothermal amplification combined with colorimetric nanogold for detection of the microsporidian Enterocytozoon hepatopenaei in penaeid shrimp, J. Appl. Microbiol., 114, 1254, 10.1111/jam.12160
Jaroenlak, 2016, A nested PCR assay to avoid false positive detection of the microsporidian enterocytozoon hepatopenaei (EHP) in environmental samples in shrimp farms, PLoS One, 11, 10.1371/journal.pone.0166320
Koiwai, 2018, A rapid method for simultaneously diagnosing four shrimp diseases using PCR-DNA chromatography method, J. Fish Dis., 41, 395, 10.1111/jfd.12732
Chou, 2011, Real-time target-specific detection of loop-mediated isothermal amplification for white spot syndrome virus using fluorescence energy transfer-based probes, J. Virol. Methods, 173, 67, 10.1016/j.jviromet.2011.01.009
Adli, 2018, The CRISPR tool kit for genome editing and beyond, Nat. Commun., 9, 10.1038/s41467-018-04252-2
Jinek, 2012, A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity, Science (80-.), 337, 816, 10.1126/science.1225829
Barrangou, 2007, CRISPR provides acquired resistance against viruses in prokaryotes, Science, 315, 1709, 10.1126/science.1138140
Sapranauskas, 2011, The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli, Nucleic Acids Res., 39, 9275, 10.1093/nar/gkr606
Bolotin, 2005, Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin, Microbiology, 151, 2551, 10.1099/mic.0.28048-0
Chen, 2018, CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity, Science (80-.), 360, 436, 10.1126/science.aar6245
Li, 2018, CRISPR-Cas12a-assisted nucleic acid detection, Cell Discov., 4, 10.1038/s41421-018-0028-z
Bai, 2019, Cas12a-based on-site and rapid nucleic acid detection of african swine fever, Front. Microbiol., 10, 10.3389/fmicb.2019.02830
Tsou, 2019, A CRISPR test for detection of circulating nuclei acids, Transl. Oncol., 12, 1566, 10.1016/j.tranon.2019.08.011
Xiao, 2019, Cas12a/gRNA-based platform for rapid and accurate identification of major Mycobacterium species, J. Clin. Microbiol., 10.1128/JCM.01368-19
Gootenberg, 2018, Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a and Csm6, Science (80-.), 360, 439, 10.1126/science.aaq0179
Piepenburg, 2006, DNA detection using recombination proteins, PLoS Biol., 4, 1115, 10.1371/journal.pbio.0040204
Chaijarasphong, 2019, Potential application of CRISPR-Cas12a fluorescence assay coupled with rapid nucleic acid amplification for detection of white spot syndrome virus in shrimp, Aquaculture., 10.1016/j.aquaculture.2019.734340
Wiredu Boakye, 2017, Decay of the glycolytic pathway and adaptation to intranuclear parasitism within Enterocytozoonidae microsporidia, Environ. Microbiol., 19, 2077, 10.1111/1462-2920.13734
Delbac, 2001, Microsporidian invasion apparatus: identification of a novel polar tube protein and evidence for clustering of ptp1 and ptp2 genes in three encephalitozoon species, Infect. Immun., 69, 1016, 10.1128/IAI.69.2.1016-1024.2001
Wang, 2019, Polar tube structure and three polar tube proteins identified from Nosema pernyi, J. Invertebr. Pathol., 168, 10.1016/j.jip.2019.107272
Aldama-Cano, 2018, Bioassay for spore polar tube extrusion of shrimp Enterocytozoon hepatopenaei (EHP), Aquaculture., 490, 156, 10.1016/j.aquaculture.2018.02.039
Salachan, 2017, Laboratory cohabitation challenge model for shrimp hepatopancreatic microsporidiosis (HPM) caused by Enterocytozoon hepatopenaei (EHP), BMC Vet. Res., 13, 1
Doench, 2014, Rational design of highly active sgRNAs for CRISPR-Cas9–mediated gene inactivation, Nat. Biotechnol., 32, 1262, 10.1038/nbt.3026
Boyle, 2013, Rapid detection of HIV-1 proviral DNA for early infant diagnosis using recombinase polymerase amplification, MBio, 4, 10.1128/mBio.00135-13
TwistDx, 2018
Wang, 2019, Cas12aVDet: A CRISPR/Cas12a-Based Platform for Rapid and Visual Nucleic Acid Detection, Anal. Chem., 91, 12156, 10.1021/acs.analchem.9b01526
Kellner, 2019, SHERLOCK: nucleic acid detection with CRISPR nucleases, Nat. Protoc., 14, 2986, 10.1038/s41596-019-0210-2
Spoelstra, 2018, CRISPR-based DNA and RNA detection with liquid phase separation, BioRxiv, 1
Sullivan, 2019, Rapid, CRISPR-based, field-deployable detection of white spot syndrome virus in shrimp, Sci. Rep., 9, 1, 10.1038/s41598-019-56170-y
Zhou, 2020, Rapid detection of Enterocytozoon hepatopenaei in shrimp through an isothermal recombinase polymerase amplification assay, Aquaculture., 294
Crannell, 2014, Equipment-free incubation of recombinase polymerase amplification reactions using body heat, PLoS One, 9, 1, 10.1371/journal.pone.0112146
Gootenberg, 2017, Nucleic acid detection with CRISPR-Cas13a/C2c2, Science (80-.), 356, 438, 10.1126/science.aam9321
Zou, 2017, Nucleic acid purification from plants, animals and microbes in under 30 seconds, PLoS Biol., 15, 1, 10.1371/journal.pbio.2003916
Shi, 2018, Filter paper-based spin column method for cost-efficient DNA or RNA purification, PLoS One, 13, 1, 10.1371/journal.pone.0203011
Wu, 2020, Contamination-free visual detection of CaMV35S promoter amplicon using CRISPR/Cas12a coupled with a designed reaction vessel: rapid, specific and sensitive, Anal. Chim. Acta, 1096, 130, 10.1016/j.aca.2019.10.042
Shahin, 2018, Development of a recombinase polymerase amplification assay for rapid detection of Francisella noatunensis subsp. orientalis, PLoS One, 13, 10.1371/journal.pone.0192979
Wang, 2017, Instant, visual, and instrument-free method for on-site screening of GTS 40-3-2 soybean based on body-heat triggered recombinase polymerase amplification, Anal. Chem., 89, 4413, 10.1021/acs.analchem.7b00964