Diversity analysis of vineyards soil bacterial community in different planting years at eastern foot of Helan Mountain, Ningxia

Rhizosphere - Tập 25 - Trang 100650 - 2023
Chaofan Wei1, Songtao Liu2, Qian Li1,3, Jun He1,3, Zhaojun Sun1,3,4, Xinyu Pan1
1School of Geography and Planning, Ningxia University, Yinchuan, Ningxia, 750021, China
2Ningxia Polytechnic, Yinchuan, Ningxia, 750021, China
3China-Arab Joint International Research Laboratory for Featured Resources and Environmental Governance in Arid Regions, Yinchuan, Ningxia, 750021, China
4Ningxia (China-Arab) Key Laboratory of Resources Assessment and Environment Regulation in Arid Regions, Yinchuan, Ningxia, 750021, China

Tài liệu tham khảo

Bao, 2000 Blok, 2000, Control of soilborne plant pathogens by incorporating fresh organic amendments followed by tarping, Phytopathology, 90, 253, 10.1094/PHYTO.2000.90.3.253 Bou Nader, 2019, Impact of grapevine age on water status and productivity of Vitis vinifera L. cv. Riesling, Eur. J. Agron., 104, 1, 10.1016/j.eja.2018.12.009 Burns, 2015, Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: differentiation by geographic features, Soil Biol. Biochem., 91, 232, 10.1016/j.soilbio.2015.09.002 Cadogan, 2015, Facile synthesis of chitosan derivatives and Arthrobacter sp. biomass for the removal of europium (III) ions from aqueous solution through biosorption, Int. Biodeterior. Biodegrad., 102, 286, 10.1016/j.ibiod.2015.01.018 Caporaso, 2011, Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample, Proc. Natl. Acad. Sci. USA, 108, 4516, 10.1073/pnas.1000080107 Chatelet, 2006, Xylem structure and connectivity in grapevine (Vitis vinifera) shoots provides a passive mechanism for the spread of bacteria in grape plants, Ann. Bot. (Lond.), 98, 483, 10.1093/aob/mcl124 Chen, 2017 Chen, 2011, Study on isolation, identification and phosphate accumulating capacity of Arthrobacter sp, J. Anhui Agric. Sci., 39, 447 Cui, 2018, Characteristics of rhizosphere bacterial community across different cultivation years in saline-alkaline paddy soils of songnen plain of China, Can. J. Microbiol., 64, 925, 10.1139/cjm-2017-0752 DeBruyn, 2011, Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil, Appl. Environ. Microbiol., 77, 6295, 10.1128/AEM.05005-11 Ding, 2021, Research status of the diversity of natural microbial community and metabolic enzyme system in grape ecosystem, Microbiol. China., 48, 2837 Edgar, 2013, UPARSE: highly accurate OTUs sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604 Edgar, 2011, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381 El-Tarabily, 2006, Non-streptomycete actinomycetes as biocontrol agents of soil-borne fungal plant pathogens and as plant growth promoters, Soil Biol. Biochem., 38, 1505, 10.1016/j.soilbio.2005.12.017 Fierer, 2003, Variations in microbial community composition through two soil depth profiles, Soil Biol. Biochem., 35, 167, 10.1016/S0038-0717(02)00251-1 Gao, 2019, Effects of continuous cropping of sweet potato on the fungal community structure in rhizospheric soil, Front. Microbiol., 10, 2269, 10.3389/fmicb.2019.02269 Guo, 2018, Topsoil physical and chemical indexes of continuous cropping cotton field in xinjiang, Chin. Agric. Sci. Bull., 34, 69 Guo, 2010, Activity of urease and contents of nutrient in the soil of grape replant, Chin. J. Soil Sci., 41, 320 Gupta, 2019, Vineyard soil microbiome composition related to rotundone concentration in Australian cool climate ‘peppery’ Shiraz grapes, Front. Microbiol., 10, 1607, 10.3389/fmicb.2019.01607 Haas, 2011, Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons, Genome Res., 21, 494, 10.1101/gr.112730.110 Hao, 2022, Effects of continuous cropping and rotation on rhizosphere bacterial community structure of millet, J. Agro-Environ. Sci., 41, 585 Huang, 2014, Rhizosphere interactions: root exudates, microbes, and microbial communities, Botany, 92, 267, 10.1139/cjb-2013-0225 Hunter, 2017, Vineyard row orientation and grape ripeness level effects on vegetative and reproductive growth characteristics of Vitis vinifera L. cv. Shiraz/101-14 Mgt, Eur. J. Agron., 84, 47, 10.1016/j.eja.2016.12.004 Jenkins, 2009, Actinobacterial community dynamics in long term managed grasslands, Antonie Leeuwenhoek, 95, 319, 10.1007/s10482-009-9317-8 Jiang, 2019, vol. 4, 32 Landa, 2014, Soil factors involved in the diversity and structure of soil bacterial communities in commercial organic olive orchards in Southern Spain, Environ. Microbiol. Rep., 6, 196, 10.1111/1758-2229.12148 Lei, 2020, Diversity patterns of soil microbial communities in the Sophora flavescens rhizosphere in response to continuous monocropping, BMC Microbiol., 20, 272, 10.1186/s12866-020-01956-8 Li, 2009, Effects of grape-replanting on soil bacterial and fungal populations, Chin. J. Appl. Ecol., 20, 3109 Li, 2019, Dynamic changes of soil microbial biomass and enzyme activities in Ningxia vineyard, J. Irrig. Drain., 38, 67 Li, 2021, Differences of bacterial community structure in rhizosphere soil of three caragana species and its driving factors in a common garden experiment, Environ. Sci., 43, 3854 Liu, 2014, Natural grass effect in vineyards, J. Hebei Forest Sci Technol. Z1, 57 Liu, 2020, vol. 1, 1 Liu, 2015, Changes in the abundance and structure of bacterial communities under long-term fertilization treatments in a peanut monocropping system, Plant Soil, 395, 415, 10.1007/s11104-015-2569-3 Maree, 2018, Application of HTS for routine plant virus diagnostics: state of the art and challenges, Front. Plant Sci., 9, 1082, 10.3389/fpls.2018.01082 Martin, 2011, Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet j, 17, 10, 10.14806/ej.17.1.200 Michael, 2010, Considering fungal: bacterial dominance in soils –Methods, controls, and ecosystem implications, Soil Biol. Biochem., 42, 1385, 10.1016/j.soilbio.2010.05.007 Morgan, 2017, The grapevine and wine microbiome: insights from high-throughput amplicon sequencing, Front. Microbiol., 8, 820, 10.3389/fmicb.2017.00820 Noval Rivas, 2013, A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis, J. Allergy Clin. Immunol., 131, 201, 10.1016/j.jaci.2012.10.026 Novello, 2017, The rhizosphere bacterial microbiota of Vitis vinifera cv. Pinot noir in an integrated pest management vineyard, Front. Microbiol., 8, 1528, 10.3389/fmicb.2017.01528 Pan, 2022, Soil fungal community structures in aged vineyards at the eastern foot of Helan Mountain in Ningxia, J. Northwest A&F Univ. (Nat. Sci. Ed.), 9, 2 Quast, 2013, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res., 41, D590, 10.1093/nar/gks1219 Rodríguez-Loinaz, 2008, Relationship between vegetation diversity and soil functional diversity in native mixed-oak forests, Soil Biol. Biochem., 40, 49, 10.1016/j.soilbio.2007.04.015 Rodriguez-R, 2014, Estimating coverage in metagenomic data sets and why it matters, ISME J., 8, 2349, 10.1038/ismej.2014.76 Salas, 2021, Bacterial nitric oxide metabolism: recent insights in rhizobia, Adv. Microb. Physiol., 78, 259, 10.1016/bs.ampbs.2021.05.001 Shi, 2019, Effects of combined application of organic and inorganic fertilizers on flue-cured tobacco soil nutrients and bacterial community structure, Soil Fert. Sci. China., 4, 58 Singh, 2020, Cropping systems influence microbial diversity, soil quality and crop yields in Indo-Gangetic plains of India, Eur. J. Agron., 121, 10.1016/j.eja.2020.126152 Soltani, 2021, Quality assessment and validation of high-throughput sequencing for grapevine virus diagnostics, Viruses, 13, 1130, 10.3390/v13061130 Tao, 2022, Effects of soil disinfestation methods on nutrients and microbial community structure in different soil depths, J. Agro-Environ. Sci., 41, 575 Thorne, 2006, The structure of xylem vessels in grapevines (Vitaceae) and a possible passive mechanism for the systemic spread of bacterial disease, Am. J. Bot., 93, 497, 10.3732/ajb.93.4.497 Vega-Avila, 2015, Bacterial communities in the rhizosphere of Vitis vinifera L. cultivated under distinct agricultural practices in Argentina, Antonie Leeuwenhoek, 107, 575, 10.1007/s10482-014-0353-7 Wang, 2007, Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261, 10.1128/AEM.00062-07 Wang, 2021, Relationships of soil physicochemical properties to the distribution and the composition of microbial community under Populus euphratica's crown.Acta, Microbiol. Sin., 41, 5669 Zarraonaindia, 2015, The soil microbiome influences grapevine-associated microbiota, mBio, 6, e02527, 10.1128/mBio.02527-14 Zhang, 2021, Bacterial community diversity of grape and rhizosphere soil of grapevine plants grown in southeastern Tibet, Food Ferment. Ind., 47, 100 Zhou, 2011, Effects of intercropping cucumber with onion or garlic on soil enzyme activities, microbial communities and cucumber yield, Eur. J. Soil Biol., 47, 279, 10.1016/j.ejsobi.2011.07.001 Zhu, 2020, Advances in method of reductive soil disinfestation, Soils, 52, 223 Zou, 2021, Rotational strip intercropping of maize and peanuts has multiple benefits for agricultural production in the northern agropastoral ecotone region of China, Eur. J. Agron., 129, 10.1016/j.eja.2021.126304