Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases
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Adams, 2010, PHENIX: a comprehensive Python-based system for macromolecular structure solution, Acta Crystallogr. D Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925
Alarcón, 2015, N6-methyladenosine marks primary microRNAs for processing, Nature, 519, 482, 10.1038/nature14281
Bell, 2014, Novel genetic targets in endometrial cancer, Expert Opin. Ther. Targets, 18, 725, 10.1517/14728222.2014.909414
Ben-Haim, 2015, FTO: linking m6A demethylation to adipogenesis, Cell Res., 25, 3, 10.1038/cr.2014.162
Bokar, 1997, Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase, RNA, 3, 1233
Brown, 2005, Zinc finger proteins: getting a grip on RNA, Curr. Opin. Struct. Biol., 15, 94, 10.1016/j.sbi.2005.01.006
Bujnicki, 2002, Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase, J. Mol. Evol., 55, 431, 10.1007/s00239-002-2339-8
Chen, 2015, m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency, Cell Stem Cell, 16, 289, 10.1016/j.stem.2015.01.016
Csepany, 1990, Sequence specificity of mRNA N6-adenosine methyltransferase, J. Biol. Chem., 265, 20117, 10.1016/S0021-9258(17)30477-5
Dominissini, 2012, Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq, Nature, 485, 201, 10.1038/nature11112
Emsley, 2004, Coot: model-building tools for molecular graphics, Acta Crystallogr. D Biol. Crystallogr., 60, 2126, 10.1107/S0907444904019158
Forbes, 2015, COSMIC: exploring the world’s knowledge of somatic mutations in human cancer, Nucleic Acids Res., 43, D805, 10.1093/nar/gku1075
Fu, 2014, Gene expression regulation mediated through reversible m6A RNA methylation, Nat. Rev. Genet., 15, 293, 10.1038/nrg3724
Fustin, 2013, RNA-methylation-dependent RNA processing controls the speed of the circadian clock, Cell, 155, 793, 10.1016/j.cell.2013.10.026
Geula, 2015, Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation, Science, 347, 1002, 10.1126/science.1261417
Guja, 2013, Structural basis for S-adenosylmethionine binding and methyltransferase activity by mitochondrial transcription factor B1, Nucleic Acids Res., 41, 7947, 10.1093/nar/gkt547
Hall, 2005, Multiple modes of RNA recognition by zinc finger proteins, Curr. Opin. Struct. Biol., 15, 367, 10.1016/j.sbi.2005.04.004
Harper, 1990, Sequence specificity of the human mRNA N6-adenosine methylase in vitro, Nucleic Acids Res., 18, 5735, 10.1093/nar/18.19.5735
Iyer, 2016, Adenine methylation in eukaryotes: apprehending the complex evolutionary history and functional potential of an epigenetic modification, BioEssays, 38, 27, 10.1002/bies.201500104
Jia, 2007, Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation, Nature, 449, 248, 10.1038/nature06146
Jia, 2011, N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO, Nat. Chem. Biol., 7, 885, 10.1038/nchembio.687
Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Cryst., 26, 283, 10.1107/S0021889892009944
Li, 2016, A Radioactivity-based assay for screening human m6A-RNA methyltransferase, METTL3-METTL14 complex, and demethylase ALKBH5, J. Biomol. Screen., 21, 290, 10.1177/1087057115623264
Liu, 2016, N6-methyladenosine-encoded epitranscriptomics, Nat. Struct. Mol. Biol., 23, 98, 10.1038/nsmb.3162
Liu, 2014, A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation, Nat. Chem. Biol., 10, 93, 10.1038/nchembio.1432
Liu, 2015, Preparation of human nuclear RNA m6A methyltransferases and demethylases and biochemical characterization of their catalytic activity, Methods Enzymol., 560, 117, 10.1016/bs.mie.2015.03.013
Liu, 2015, N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions, Nature, 518, 560, 10.1038/nature14234
Lunde, 2007, RNA-binding proteins: modular design for efficient function, Nat. Rev. Mol. Cell Biol., 8, 479, 10.1038/nrm2178
Meyer, 2014, The dynamic epitranscriptome: N6-methyladenosine and gene expression control, Nat. Rev. Mol. Cell Biol., 15, 313, 10.1038/nrm3785
Meyer, 2012, Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons, Cell, 149, 1635, 10.1016/j.cell.2012.05.003
Minor, 2006, HKL-3000: the integration of data reduction and structure solution—from diffraction images to an initial model in minutes, Acta Crystallogr. D Biol. Crystallogr., 62, 859, 10.1107/S0907444906019949
Morin, 2013, Collaboration gets the most out of software, eLife, 2, e01456, 10.7554/eLife.01456
Peng, 2016, LncRNAs: key players and novel insights into cervical cancer, Tumour Biol., 37, 2779, 10.1007/s13277-015-4663-9
Ping, 2014, Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase, Cell Res., 24, 177, 10.1038/cr.2014.3
Rottman, 1994, N6-adenosine methylation in mRNA: substrate specificity and enzyme complexity, Biochimie, 76, 1109, 10.1016/0300-9084(94)90038-8
Schibler, 1977, Comparison of methylated sequences in messenger RNA and heterogeneous nuclear RNA from mouse L cells, J. Mol. Biol., 115, 695, 10.1016/0022-2836(77)90110-3
Schwartz, 2014, Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5′ sites, Cell Rep., 8, 284, 10.1016/j.celrep.2014.05.048
Song, 2012, Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation, Science, 335, 709, 10.1126/science.1214453
Studier, 2005, Protein production by auto-induction in high density shaking cultures, Protein Expr. Purif., 41, 207, 10.1016/j.pep.2005.01.016
Thomas, 2003, Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding, J. Biol. Chem., 278, 26094, 10.1074/jbc.M303751200
Wallace, 1995, LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions, Protein Eng., 8, 127, 10.1093/protein/8.2.127
Wang, 2014, N6-methyladenosine-dependent regulation of messenger RNA stability, Nature, 505, 117, 10.1038/nature12730
Wang, 2014, N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells, Nat. Cell Biol., 16, 191, 10.1038/ncb2902
Wang, 2015, N(6)-methyladenosine modulates messenger RNA translation efficiency, Cell, 161, 1388, 10.1016/j.cell.2015.05.014
Yang, 2010, Crystal structure of the nosiheptide-resistance methyltransferase of Streptomyces actuosus, Biochemistry, 49, 6440, 10.1021/bi1005915
Zheng, 2013, ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility, Mol. Cell, 49, 18, 10.1016/j.molcel.2012.10.015
Zhou, 2016, N(6)-methyladenosine modification in a long noncoding RNA hairpin predisposes its conformation to protein binding, J. Mol. Biol., 428, 822, 10.1016/j.jmb.2015.08.021