Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation

Akao, 2002, Subtract cloning of cDNA from Aspergillus oryzae differentially regulated between solid-state culture and liquid (submerged) culture, Curr. Genet., 41, 275, 10.1007/s00294-002-0314-y Akao, 2007, Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions, DNA Res., 14, 47, 10.1093/dnares/dsm008 Bok, 2004, LaeA, a regulator of secondary metabolism in Aspergillus spp., Eukaryot. Cell, 3, 527, 10.1128/EC.3.2.527-535.2004 Bok, 2006, Secondary metabolic gene cluster silencing in Aspergillus nidulans, Mol. Microbiol., 61, 1636, 10.1111/j.1365-2958.2006.05330.x Cathala, 1983, A method for isolation of intact, translationally active ribonucleic acid, DNA, 2, 329, 10.1089/dna.1983.2.329 Chien, 2002, Purification, characterization, and genetic analysis of a leucine aminopeptidase from Aspergillus sojae, Biochim. Biophys. Acta, 1576, 119, 10.1016/S0167-4781(02)00307-X Cramer, 2006, Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus, Gene, 15, 24, 10.1016/j.gene.2006.07.008 Galagan, 2005, Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae, Nature, 438, 1105, 10.1038/nature04341 Hata, 1997, Comparison of two glucoamylases produced by Aspergillus oryzae in solid-state culture (koji) and in submerged culture, J. Ferment. Technol., 84, 532, 10.1016/S0922-338X(97)81907-1 Hata, 1998, Nucleotide sequence of an alternative glucoamylase-encoding gene (glaB) expressed in solid-state culture of Aspergillus oryzae, Gene, 207, 127, 10.1016/S0378-1119(97)00612-4 Holker, 2005, Solid-state fermentation—are there any biotechnological advantages?, Curr. Opin. Microbiol., 8, 301, 10.1016/j.mib.2005.04.006 Ishida, 1998, Regulation of the glucoamylase-encoding gene (glaB), expressed in solid-state culture (koji) of Aspergillus oryzae, J. Ferment. Bioeng., 86, 301, 10.1016/S0922-338X(98)80134-7 Machida, 2005, Genome sequencing and analysis of Aspergillus oryzae, Nature, 438, 1157, 10.1038/nature04300 Maeda, 2004, Transcriptional analysis of genes for energy catabolism and hydrolytic enzymes in the filamentous fungus Aspergillus oryzae using cDNA microarrays and expressed sequence tags, Appl. Microbiol. Biotechnol., 65, 74, 10.1007/s00253-004-1608-4 Murakami, 1991, Isolation and characterization of the alkaline protease gene of Aspergillus oryzae, Agric. Biol. Chem., 55, 2807 Nierman, 2005, Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus, Nature, 438, 1151, 10.1038/nature04332 Oda, 2006, Proteomic analysis of extracellular proteins from Aspergillus oryzae grown under submerged and solid-state culture conditions, Appl. Environ. Microbiol., 72, 3448, 10.1128/AEM.72.5.3448-3457.2006 Robinson, 2001, Solid-state fermentation: a promising microbial technology for secondary metabolite production, Appl. Microbiol. Biotechnol., 55, 284, 10.1007/s002530000565 Siebert, 1993, PCR MIMICS: competitive DNA fragments for use as internal standards in quantitative PCR, Biotechniques, 14, 244 Takahashi, 2002, Nonfunctionality of Aspergillus sojae aflR in a strain of Aspergillus parasiticus with a disrupted aflR gene, Appl. Environ. Microbiol., 68, 3737, 10.1128/AEM.68.8.3737-3743.2002 Tatsumi, 1991, Cloning and expression in yeast of a cDNA clone encoding Aspergillus oryzae neutral protease II, a unique metalloprotease, Mol. Gen. Genet., 228, 97, 10.1007/BF00282453 Tamano, 2007, The beta-1,3-exoglucanase gene exgA (exg1) of Aspergillus oryzae is required to catabolize extracellular glucan, and is induced in growth on a solid surface, Biosci. Biotechnol. Biochem., 71, 926, 10.1271/bbb.60591 Tatusov, 2003, The COG database: an updated version includes eukaryotes, BMC Bioinformatics, 4, 41, 10.1186/1471-2105-4-41 von Heijne, 1986, A new method for predicting signal sequence cleavage sites, Nucleic Acids Res., 14, 4683, 10.1093/nar/14.11.4683 Yu, 2004, Genomics of economically significant Aspergillus and Fusarium species, vol. 4, 249, 10.1016/S1874-5334(04)80013-3