microRNAs as oncogenes and tumor suppressors
Tài liệu tham khảo
Abelson, 2005, Sequence variants in SLITRK1 are associated with Tourette's syndrome, Science, 310, 317, 10.1126/science.1116502
Alvarez-Garcia, 2005, MicroRNA functions in animal development and human disease, Development, 132, 4653, 10.1242/dev.02073
Ambros, 2001, microRNAs: tiny regulators with great potential, Cell, 107, 823, 10.1016/S0092-8674(01)00616-X
Ambros, 2004, The functions of animal microRNAs, Nature, 431, 350, 10.1038/nature02871
Babak, 2004, Probing microRNAs with microarrays: tissue specificity and functional inference, RNA, 10, 1813, 10.1261/rna.7119904
Barad, 2004, MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues, Genome Res., 14, 2486, 10.1101/gr.2845604
Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5
Berezikov, 2005, Phylogenetic shadowing and computational identification of human microRNA genes, Cell, 120, 21, 10.1016/j.cell.2004.12.031
Bohnsack, 2004, Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs, RNA, 10, 185, 10.1261/rna.5167604
Brown, 2005, A computational view of microRNAs and their targets, Drug Discovery Today, 10, 595, 10.1016/S1359-6446(05)03399-4
Cai, 2004, Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs, RNA, 10, 1957, 10.1261/rna.7135204
Calin, 2002, Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia, Proc. Natl. Acad. Sci. U. S. A., 99, 15524, 10.1073/pnas.242606799
Calin, 2004, MicroRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias, Proc. Natl. Acad. Sci. U. S. A., 101, 11755, 10.1073/pnas.0404432101
Calin, 2004, Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers, Proc. Natl. Acad. Sci. U. S. A., 101, 2999, 10.1073/pnas.0307323101
Calin, 2005, A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia, N. Engl. J. Med., 353, 1793, 10.1056/NEJMoa050995
Carrington, 2003, Role of microRNAs in plant and animal development, Science, 301, 336, 10.1126/science.1085242
Chan, 2005, MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells, Cancer Res., 65, 6029, 10.1158/0008-5472.CAN-05-0137
Chen, 2005, microRNA biogenesis and function in plants, FEBS Lett., 579, 5923, 10.1016/j.febslet.2005.07.071
Cheng, 2005, Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis, Nucleic Acids Res., 33, 1290, 10.1093/nar/gki200
Cheng, 2005, Stem cells: from epigenetics to microRNAs, Neuron, 46, 363, 10.1016/j.neuron.2005.04.027
Ciafre, 2005, Extensive modulation of a set of microRNAs in primary glioblastoma, Biochem. Biophys. Res. Commun., 334, 1351, 10.1016/j.bbrc.2005.07.030
Cimmino, 2005, miR-15 and miR-16 induce apoptosis by targeting BCL2, Proc. Natl. Acad. Sci. U. S. A., 102, 13944, 10.1073/pnas.0506654102
Cole, 1999, The Myc oncoprotein: a critical evaluation of transactivation and target gene regulation, Oncogene, 18, 2916, 10.1038/sj.onc.1202748
de Moor, 2005, Mechanisms of translational control by the 3′ UTR in development and differentiation, Semin. Cell Dev. Biol., 16, 49, 10.1016/j.semcdb.2004.11.007
Denli, 2004, Processing of primary microRNAs by the microprocessor complex, Nature, 432, 231, 10.1038/nature03049
Dickins, 2005, Probing tumor phenotypes using stable and regulated synthetic microRNA precursors, Nat. Genet., 37, 1289, 10.1038/ng1651
Dohner, 2000, Genomic aberrations and survival in chronic lymphocytic leukemia, N. Engl. J. Med., 343, 1910, 10.1056/NEJM200012283432602
Eder, 2005, MicroRNA and lung cancer, N. Engl. J. Med., 352, 2446, 10.1056/NEJMcibr051201
Eis, 2005, Accumulation of miR-155 and BIC RNA in human B cell lymphomas, Proc. Natl. Acad. Sci. U. S. A., 102, 3627, 10.1073/pnas.0500613102
Fernandez, 2003, Genomic targets of the human c-Myc protein, Genes Dev., 17, 1115, 10.1101/gad.1067003
Floyd, 2004, Gene regulation: ancient microRNA target sequences in plants, Nature, 428, 485, 10.1038/428485a
Gregory, 2004, The Microprocessor complex mediates the genesis of microRNAs, Nature, 432, 235, 10.1038/nature03120
Gregory, 2005, Human RISC couples microRNA biogenesis and posttranscriptional gene silencing, Cell, 123, 631, 10.1016/j.cell.2005.10.022
Griffiths-Jones, 2004, The microRNA registry, Nucleic Acids Res., 32, D109, 10.1093/nar/gkh023
Griffiths-Jones, 2006, miRBase: microRNA sequences, targets and gene nomenclature, Nucleic Acids Res., 34, D140, 10.1093/nar/gkj112
Grishok, 2001, Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Cell, 106, 23, 10.1016/S0092-8674(01)00431-7
Haasch, 2002, T cell activation induces a noncoding RNA transcript sensitive to inhibition by immunosuppressant drugs and encoded by the proto-oncogene, BIC, Cell. Immunol., 217, 78, 10.1016/S0008-8749(02)00506-3
Hahn, 1999, Creation of human tumour cells with defined genetic elements, Nature, 400, 464, 10.1038/22780
Hammond, 2006, MicroRNAs as oncogenes, Curr. Opin. Genet. Dev., 16, 4, 10.1016/j.gde.2005.12.005
Han, 2004, The Drosha-DGCR8 complex in primary microRNA processing, Genes Dev., 18, 3016, 10.1101/gad.1262504
Hatfield, 2005, Stem cell division is regulated by the microRNA pathway, Nature, 435, 974, 10.1038/nature03816
Hayashita, 2005, A polycistronic microRNA cluster, miR-17–92, is overexpressed in human lung cancers and enhances cell proliferation, Cancer Res., 65, 9628, 10.1158/0008-5472.CAN-05-2352
He, 2005, The role of microRNA genes in papillary thyroid carcinoma, Proc. Natl. Acad. Sci. U. S. A., 102, 19075, 10.1073/pnas.0509603102
He, 2005, A microRNA polycistron as a potential human oncogene, Nature, 435, 828, 10.1038/nature03552
Houbaviy, 2003, Embryonic stem cell-specific microRNAs, Dev. Cell, 5, 351, 10.1016/S1534-5807(03)00227-2
Hutvagner, 2001, A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA, Science, 293, 834, 10.1126/science.1062961
Hutvagner, 2004, Sequence-specific inhibition of small RNA function, PLOS Biol., 2, 465, 10.1371/journal.pbio.0020098
Iorio, 2005, MicroRNA gene expression deregulation in human breast cancer, Cancer Res., 65, 7065, 10.1158/0008-5472.CAN-05-1783
Jiang, 2005, Real-time expression profiling of microRNA precursors in human cancer cell lines, Nucleic Acids Res., 33, 5394, 10.1093/nar/gki863
John, 2004, Human MicroRNA targets, PLOS Biol., 2, 1862, 10.1371/journal.pbio.0020363
Johnson, 2003, The time of appearance of the C. elegans let-7 microRNA is transcriptionally controlled utilizing a temporal regulatory element in its promoter, Dev. Biol., 259, 364, 10.1016/S0012-1606(03)00202-1
Johnson, 2005, RAS is regulated by the let-7 microRNA family, Cell, 120, 635, 10.1016/j.cell.2005.01.014
Johnston, 2003, A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans, Nature, 426, 845, 10.1038/nature02255
Ketting, 2001, Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans, Genes Dev., 15, 2654, 10.1101/gad.927801
Kim, 2005, MicroRNA biogenesis: coordinated cropping and dicing, Nat. Rev., Mol. Cell Biol., 6, 376, 10.1038/nrm1644
Kimura, 2003, High prevalence of BRAF mutations in thyroid cancer: genetic evidence for constitutive activation of the RET/PTC-RAS-BRAF signaling pathway in papillary thyroid carcinoma, Cancer Res., 63, 1454
Kolfschoten, 2005, A genetic screen identifies PITX1 as a suppressor of RAS activity and tumorigenicity, Cell, 121, 849, 10.1016/j.cell.2005.04.017
Krek, 2005, Combinatorial microRNA target predictions, Nat. Genet., 37, 495, 10.1038/ng1536
Krutzfeldt, 2005, Silencing of microRNAs in vivo with ‘antagomirs’, Nature, 438, 685, 10.1038/nature04303
Lagos-Quintana, 2001, Identification of novel genes coding for small expressed RNAs, Science, 294, 853, 10.1126/science.1064921
Lai, 2002, Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation, Nat. Genet., 30, 363, 10.1038/ng865
Lai, 2003, Computational identification of Drosophila microRNA genes, Genome Biol., 4, R42, 10.1186/gb-2003-4-7-r42
Landthaler, 2004, The human DiGeorge syndrome critical region gene 8 and its D. melanogaster homolog are required for miRNA biogenesis, Curr. Biol., 14, 2162, 10.1016/j.cub.2004.11.001
Lau, 2001, An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans, Science, 294, 858, 10.1126/science.1065062
Lee, 2001, An extensive class of small RNAs in Caenorhabditis elegans, Science, 294, 862, 10.1126/science.1065329
Lee, 1993, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14, Cell, 75, 843, 10.1016/0092-8674(93)90529-Y
Lee, 2002, MicroRNA maturation: stepwise processing and subcellular localization, EMBO J., 21, 4663, 10.1093/emboj/cdf476
Lee, 2004, MicroRNA genes are transcribed by RNA polymerase II, EMBO J., 23, 4051, 10.1038/sj.emboj.7600385
Levens, 2002, Disentangling the MYC web, Proc. Natl. Acad. Sci. U. S. A., 99, 5757, 10.1073/pnas.102173199
Lewis, 2003, Prediction of mammalian microRNA targets, Cell, 115, 787, 10.1016/S0092-8674(03)01018-3
Lewis, 2005, Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets, Cell, 120, 15, 10.1016/j.cell.2004.12.035
Li, 2003, A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells, Proc. Natl. Acad. Sci. U. S. A., 100, 8164, 10.1073/pnas.1332764100
Liang, 2005, An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe, Nucleic Acids Res., 33, e17, 10.1093/nar/gni019
Lim, 2003, Vertebrate microRNA genes, Science, 299, 1540, 10.1126/science.1080372
Lim, 2003, The microRNAs of Caenorhabditis elegans, Genes Dev., 17, 991, 10.1101/gad.1074403
Lin, 2005, Asymmetry of intronic pre-miRNA structures in functional RISC assembly, Gene, 356, 32, 10.1016/j.gene.2005.04.036
Liu, 2004, An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues, Proc. Natl. Acad. Sci. U. S. A., 101, 9740, 10.1073/pnas.0403293101
Lu, 2005, MicroRNA expression profiles classify human cancers, Nature, 435, 834, 10.1038/nature03702
Lund, 2004, Nuclear export of microRNA precursors, Science, 303, 95, 10.1126/science.1090599
Meister, 2004, Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing, RNA, 10, 544, 10.1261/rna.5235104
Melillo, 2005, The RET/PTC-RAS-BRAF linear signaling cascade mediates the motile and mitogenic phenotype of thyroid cancer cells, J. Clin. Invest., 115, 1068, 10.1172/JCI200522758
Meltzer, 2005, Cancer genomics: small RNAs with big impacts, Nature, 435, 745, 10.1038/435745a
Metzler, 2004, High expression of precursor microRNA-155/BIC RNA in children with Burkitt lymphoma, Genes, Chromosomes Cancer, 39, 167, 10.1002/gcc.10316
Michael, 2003, Reduced accumulation of specific microRNAs in colorectal neoplasia, Mol. Cancer Res., 1, 882
Miska, 2004, Microarray analysis of microRNA expression in the developing mammalian brain, Genome, 5, R68
Murakami, 2006, Comprehensive analysis of microRNA expression patterns in hepatocellular carcinoma and non-tumorous tissues, Oncogene, 25, 2537, 10.1038/sj.onc.1209283
Nairz, 2006, Overgrowth caused by misexpression of a microRNA with dispensable wild-type function, Dev. Biol., 291, 314, 10.1016/j.ydbio.2005.11.047
Nelson, 2004, A microarray-based method for studying micro-RNA (miRNA) expression, J. Neuropathol. Exp. Neurol., 63, 520
Nelson, 2004, Microarray-based, high-throughput gene expression profiling of microRNAs, Nature Methods, 1, 155, 10.1038/nmeth717
O'Donnell, 2005, c-Myc-regulated microRNAs modulate E2F1 expression, Nature, 435, 839, 10.1038/nature03677
Orian, 2003, Genomic bindin by the Drosophila Myc, Max, Mad/Mnt transcription factor network, Genes Dev., 17, 1101, 10.1101/gad.1066903
Pallante, 2006, MicroRNA deregulation in human thyroid papillary carcinomas, Endocr.-Relat. Cancer, 13, 497, 10.1677/erc.1.01209
Pasquinelli, 2000, Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA, Nature, 408, 86, 10.1038/35040556
Rehmsmeier, 2004, Fast and effective prediction of microRNA/target duplexes, RNA-a Publication of the RNA Society, 10, 1507, 10.1261/rna.5248604
Reinhart, 2000, The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans, Nature, 403, 901, 10.1038/35002607
Robins, 2005, Human microRNAs target a functionally distinct population of genes with AT-rich 3′ UTRs, Proc. Natl. Acad. Sci. U. S. A., 102, 15557, 10.1073/pnas.0507443102
Sanchez-Beato, 2003, Cell cycle deregulation in B-cell lymphomas, Blood, 101, 1220, 10.1182/blood-2002-07-2009
Schmittgen, 2004, A high-throughput method to monitor the expression of microRNA precursors, Nucleic Acids Res., 32, e48, 10.1093/nar/gnh040
Schwab, 2006, Highly specific gene silencing by artificial microRNAs in Arabidopsis, Plant Cell, 18, 1121, 10.1105/tpc.105.039834
Stark, 2005, Animal microRNAs confer robustness to gene expression and have a significant impact on 3′ UTR evolution, Cell, 123, 1133, 10.1016/j.cell.2005.11.023
Suh, 2004, Human embryonic stem cells express a unique set of microRNAs, Dev. Biol., 270, 488, 10.1016/j.ydbio.2004.02.019
Sun, 2005, Evidence for a preferential targeting of 3′-UTRs by cis-encoded natural antisense transcripts, Nucleic Acids Res., 33, 5533, 10.1093/nar/gki852
Takamizawa, 2004, Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival, Cancer Res., 64, 3753, 10.1158/0008-5472.CAN-04-0637
Tam, 2001, Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA, Gene, 274, 157, 10.1016/S0378-1119(01)00612-6
Tam, 2002, Avian bic, a gene isolated from a common retroviral site in avian leukosis virus-induced lymphomas that encodes a noncoding RNA, cooperates with c-myc in lymphomagenesis and erythroleukemogenesis, J. Virol., 76, 4275, 10.1128/JVI.76.9.4275-4286.2002
Tanno, 2005, Silencing of endogenous IGFBP-5 by micro RNA interference affects proliferation, apoptosis and differentiation of neuroblastoma cells, Cell Death Differ., 12, 213, 10.1038/sj.cdd.4401546
Thomson, 2004, A custom microarray platform for analysis of microRNA gene expression, Nature Methods, 1, 47, 10.1038/nmeth704
Tomari, 2005, MicroRNA biogenesis: Drosha can't cut it without a partner, Curr. Biol., 15, R61, 10.1016/j.cub.2004.12.057
van den Berg, 2003, High expression of B-cell receptor inducible gene BIC in all subtypes of Hodgkin lymphoma, Genes, Chromosomes Cancer, 37, 20, 10.1002/gcc.10186
Volinia, 2006, A microRNA expression signature of human solid tumors defines cancer gene targets, Proc. Natl. Acad. Sci. U. S. A., 103, 2257, 10.1073/pnas.0510565103
Voorhoeve, 2003, The tumor-suppressive functions of the human INK4A locus, Cancer Cell, 4, 311, 10.1016/S1535-6108(03)00223-X
Voorhoeve, 2006, A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors, Cell, 124, 1169, 10.1016/j.cell.2006.02.037
Westbrook, 2005, A genetic screen for candidate tumor suppressors identifies REST, Cell, 121, 837, 10.1016/j.cell.2005.03.033
Wightman, 1993, Posttranscriptional regulation of the heterochronic gene Lin-14 by Lin-4 mediates temporal pattern-formation in C. elegans, Cell, 75, 855, 10.1016/0092-8674(93)90530-4
Wynter, 2006, The dialectics of cancer: a theory of the initiation and development of cancer through errors in RNAi, Med. Hypotheses, 66, 612, 10.1016/j.mehy.2005.10.024
Yi, 2003, Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs, Genes Dev., 17, 3011, 10.1101/gad.1158803
Zeng, 2005, Use of RNA polymerase II to transcribe artificial microRNAs, Methods Enzymol., 392, 371, 10.1016/S0076-6879(04)92022-8
Zhang, 2005, Identification and characterization of new plant microRNAs using EST analysis, Cell Res., 15, 336, 10.1038/sj.cr.7290302
Zhang, 2006, Identification of 188 conserved maize microRNAs and their targets, FEBS Lett., 580, 3753, 10.1016/j.febslet.2006.05.063
Zhang, 2006, Conservation and divergence of plant microRNA genes, Plant J., 46, 243, 10.1111/j.1365-313X.2006.02697.x
Zhang, 2006, Plant microRNA: a small regulatory molecule with big impact, Dev. Biol., 289, 3, 10.1016/j.ydbio.2005.10.036
Zhang, 2006, Evidence that miRNAs are different from other RNAs, Cell. Mol. Life Sci., 63, 246, 10.1007/s00018-005-5467-7
Zhang, 2006, microRNAs exhibit high frequency genomic alterations in human cancer, Proc. Natl. Acad. Sci. U. S. A., 103, 9136, 10.1073/pnas.0508889103
Zhang, 2006, MicroRNA: a new player in stem cells, J. Cell. Physiol., 209, 266, 10.1002/jcp.20713