Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera

van der Aa, 1971, Macroventuria, a new genus in the Venturiaceae, Persoonia, 6, 359 van der Aa, 1973, Studies in Phyllosticta I, Studies in Mycology, 5, 1 van der Aa, 2002 van der Aa, 1990, Species concepts in some larger genera of the Coelomycetes, Studies in Mycology, 32, 3 van der Aa, 2000, Contributions towards a monograph of Phoma (Coelomycetes) – VI-1. Section Phyllostictoides: Characteristics and nomenclature of its type species Phoma exigua, Persoonia, 17, 435 Abeln, 2002, Genetic differentiation of Phoma exigua varieties by means of AFLP fingerprints, Mycological Research, 106, 419, 10.1017/S0953756202005804 von Aderkas, 1983, Gangrene of the ostrich fern caused by Phoma exigua var. foveata, Canadian Journal of Plant Pathology, 5, 164, 10.1080/07060668309501619 von Aderkas, 1992, Phoma matteucciicola sp. nov., the causal agent of gangrene disease of ostrich fern, Canadian Journal of Plant Pathology, 14, 227, 10.1080/07060669209500880 Aptroot, 2006 Arenal, 2000, ITS sequencing support for Epicoccum nigrum and Phoma epicoccina being the same biological species, Mycological Research, 104, 301, 10.1017/S0953756299001537 Arenal, 2004, Taxonomic reconsideration of Epicoccum nigrum and Phoma epicoccina based on DNA sequences and morphological observations, Mycotaxon, 89, 465 von Arx, 1981 von Arx, 1987 von Arx, 1967, Uüber einige aus dem Erdboden isolierte, zu Sporormia, Preussia, und Westerdykiella gehörende Ascomyceten, Persoonia, 4, 407 Armstrong, 2005, DNA Barcodes for biosecurity: invasive species identification, Philosophical Transactions of the Royal Society of London B, 360, 1813, 10.1098/rstb.2005.1713 Aveskamp, 2008, Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance, Fungal Diversity, 31, 1 Aveskamp, 2009, DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties, Mycologia, 101, 363, 10.3852/08-199 Aveskamp, 2009, Development of taxon-specific sequence characterized amplified region (SCAR) markers based on actin sequences and DNA amplification fingerprinting (DAF): a case study in the Phoma exigua species complex, Molecular Plant Pathology, 10, 403, 10.1111/j.1364-3703.2009.00540.x Balis, 2006, Lung mass caused by Phoma exigua, Scandinavian Journal of Infectious Diseases, 38, 552, 10.1080/00365540500400969 Barr, 2000, Notes on coprophilous bitunicate Ascomycetes, Mycotaxon, 76, 105 Barr, 2002, Teichosporaceae, another family in the Pleosporales, Mycotaxon, 82, 373 Barrins, 2004, Genetic diversity of Australian isolates of Leptosphaeria maculans, the fungus that causes blackleg of canola (Brassica napus), Australasian Plant Pathology, 33, 529, 10.1071/AP04061 Barve, 2003, Cloning and characterization of the mating type (MAT) locus from Ascochyta rabiei (teleomorph Didymella rabiei) and a MAT phylogeny of legume associated Ascochyta spp, Fungal Genetics and Biology, 39, 151, 10.1016/S1087-1845(03)00015-X Bennett, 1983, Secondary metabolism and differentiation in mycelia fungi, 1 Berbee, 1996, Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rDNA gene sequence data, Molecular Biology and Evolution, 13, 462, 10.1093/oxfordjournals.molbev.a025607 Boehm, 2009, A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species, Studies in Mycology, 64, 49, 10.3114/sim.2009.64.03 Boerema, 1964, Phoma herbarum Westend., the type-species of the form-genus Phoma Sacc, Persoonia, 3, 9 Boerema, 1965, Spore development in the form-genus Phoma, Persoonia, 3, 413 Boerema, 1970, Additional notes on Phoma herbarum, Persoonia, 6, 15 Boerema, 1972, Ascochyta phaseolorum synonymous with Phoma exigua, Netherlands Journal of Plant Pathology, 78, 113, 10.1007/BF01980476 Boerema, 1993, Contributions towards a monograph of Phoma (Coelomycetes) – II. Section Peyronellaea, Persoonia, 15, 197 Boerema, 1997, Contributions towards a monograph of Phoma (Coelomycetes) – V. Subdivision of the genus in sections, Mycotaxon, 64, 321 Boerema, 1975, Conidiogenesis and conidial septation ads differentiating criteria between Phoma and Ascochyta, Persoonia, 8, 111 Boerema, 1973, The Phoma and Ascochyta species described by Wollenweber and Hochapfel in their study on fruit-rotting, Studies in Mycology, 3, 1 Boerema, 1979, Mycologisch-taxonomisch onderzoek, Verslagen en Mededelingen Plantenziektenkundige Dienst Wageningen, 153, 17 Boerema, 1990, Check-list for scientific names of common parasitic fungi. Series 3c: Fungi on bulbs: ‘additional crops’; belonging to the Araceae, Begoniaceae, Compositae, Oxalidaceae and Ranunculaceae, Netherlands Journal of Plant Pathology, 96 Boerema, 1998, Contributions towards a monograph of Phoma (Coelomycetes) – VII. Section Sclerophomella: Taxa with thick-walled pseudoparenchymatous pycnidia, Persoonia, 17, 81 Boerema, 1999, Contributions towards a monograph of Phoma (Coelomycetes) – III-Supplement. Additional species of section Plenodomus, Persoonia, 17, 273 Boerema, 1980, Vermeldingswaardige schimmelaantastingen in de periode 1975–1979. A. Aantastingen door schimmels die in Nederland niet bekend waren, Gewasbescherming, 11, 115 Boerema, 1965, Remarks on species of Phoma referred to Peyronellaea, Persoonia, 4, 47 Boerema, 1965, A comparative study of the black stem fungi on lucerne and red clover and the footrot fungus on pea, Netherlands Journal of Plant Pathology, 71, 79, 10.1007/BF01982419 Boerema, 1968, Remarks on species of Phoma referred to Peyronellaea II, Persoonia, 5, 201 Boerema, 1971, Remarks on species of Phoma referred to Peyronellaea III, Persoonia, 6, 171 Boerema, 1973, Remarks on species of Phoma referred to Peyronellaea IV, Persoonia, 7, 131 Boerema, 1977, Remarks on species of Phoma referred to Peyronellaea V, Kew Bulletin, 31, 533, 10.2307/4119399 Boerema, 1981, Phoma exigua var. diversispora and related fungi on Phaseolus beans, Zeitschrift fuür Pflanzenkrankheiten und Pflanzenschuütz, 88, 597 Boerema, 1987, Check-list for scientific names of common parasitic fungi. Supplement 2a (additions and corrections): Fungi on field crops: beet and potato; caraway, flax and oilseed poppy, Netherlands Journal of Plant Pathology, 93, 1, 10.1007/BF02078899 Boerema, 1994, Contributions towards a monograph of Phoma (Coelomycetes) – III. 1. Section Plenodomus: Taxa often with a Leptosphaeria teleomorph, Persoonia, 15, 431 Boerema, 1996, Contributions towards a monograph of Phoma (Coelomycetes) – III. 2. Misapplications of the type species name and the generic synonyms of the section Plenodomus, Persoonia, 16, 141 Boerema, 1997, Contributions towards a monograph of Phoma (Coelomycetes) IV. – Section Heterospora: Taxa with large sized conidial dimorphs, in vivo sometimes as Stagonosporopsis synanamorphs, Persoonia, 16, 335 Boerema, 2004 Bowen, 1997, Discovery of the teleomorph of Phoma medicaginis var. pinodella in culture, Mycological Research, 101, 80, 10.1017/S0953756296002195 Brewer, 1965, Electron microscope observations on the development of pycnidiospores in Phoma and Ascochyta spp, Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen C, 68, 86 Bridge, 2002, The history and application of molecular mycology, Mycologist, 16, 90, 10.1017/S0269915X0200201X Bridge, 2003, On the unreliability of published DNA sequences, New Phytologist, 160, 43, 10.1046/j.1469-8137.2003.00861.x Bridge, 2004, Reliability and use of published sequence data, New Phytologist, 161, 15, 10.1111/j.1469-8137.2004.00962.x Bugbee, 1981, The effect of seed infected with Phoma betae on rot and sucrose yield of stored sugar beet, Phytopathology, 71, 357, 10.1094/Phyto-71-357 Câmara, 2002, Molecular phylogeny of Leptosphaeria and Phaeosphaeria, Mycologia, 94, 630, 10.2307/3761714 Carbone, 1999, A method for designing primer sets for speciation studies in filamentous ascomycetes, Mycologia, 91, 553, 10.2307/3761358 Chen, 1996, Phoma heteroderae sp. nov. isolated from the eggs of Heterodera glycines, Mycologia, 88, 885, 10.2307/3761050 Chen, 2009, A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium, Molecular Ecology Resources, 9, 114, 10.1111/j.1755-0998.2009.02638.x Chilvers, 2009, Didymella pisi sp. nov., the teleomorph of Ascochyta pisi, Mycological Research, 113, 391, 10.1016/j.mycres.2008.11.017 Chongo, 2004, Genetic diversity of Ascochyta rabiei in Canada, Plant Disease, 88, 4, 10.1094/PDIS.2004.88.1.4 Costa, 1993, Survey of bovine mycotic mastitis in dairy herds in the State of São Paulo, Brazil, Mycopathologia, 124, 13, 10.1007/BF01103051 Corlett, 1991, An annotated list of the published names in Mycosphaerella and Sphaerella, Mycologia Memoir, 18, 1 Cortinas, 2006, First record of Colletogloeopsis zuluense comb. nov., causing a stem canker of Eucalyptus in China, Mycological Research, 110, 229, 10.1016/j.mycres.2005.08.012 Crous, 1998, Mycosphaerella spp. and their anamorphs associated with leaf spot diseases of Eucalyptus, Mycologia Memoirs, 21, 1 Crous, 2004, MycoBank: an online initiative to launch mycology into the 21st century, Studies in Mycology, 50, 19 Crous, 2006, Phylogenetic lineages in the Botryosphaeriaceae, Studies in Mycology, 55, 235, 10.3114/sim.55.1.235 Crous, 2009, Phylogenetic lineages in the Capnodiales, Studies in Mycology, 64, 17, 10.3114/sim.2009.64.02 Crous, 2009, Unravelling Mycosphaerella: do you believe in genera?, Persoonia, 23, 99, 10.3767/003158509X479487 Crous, 2009 Damm, 2008, Novel Paraconiothyrium species on stone fruit trees and other woody hosts, Persoonia, 20, 9, 10.3767/003158508X286842 Davey, 2009, Atradidymella muscivora gen. et sp. nov. (Pleosporales) and its anamorph Phoma muscivora sp. nov.: A new pleomorphic pathogen of boreal bryophytes, American Journal of Botany, 96, 1281, 10.3732/ajb.0900010 Davidson, 2009, A new species of Phoma causes ascochyta blight symptoms on field peas (Pisum sativum) in South Australia, Mycologia, 101, 120, 10.3852/07-199 Diederich, 2007, The lichenicolous Phoma species (coelomycetes) on Cladonia, Lichenologist, 39, 153, 10.1017/S0024282907006044 Dong, 1998, Phylogenetic studies of the Leptosphaeriaceae, Pleosporaceae and some other Loculoascomycetes based on nuclear ribosomal DNA sequences, Mycological Research, 102, 151, 10.1017/S0953756297004826 Dorenbosch, 1970, Key to nine ubiquitous soil-borne phoma-like fungi, Persoonia, 6, 1 Druzhinina, 2005, An oligonucleotide barcode for species identification in Trichoderma and Hypocrea, Fungal Genetics and Biology, 42, 813, 10.1016/j.fgb.2005.06.007 Ellis, 1888, New species of fungi from various localities, Journal of Mycology, 4, 97, 10.2307/3752503 Faisal, 2007, Outbreaks of phaeohyphomycosis in the chinook salmon (Oncorhynchus tshawyscha) caused by Phoma herbarum, Mycopathologia, 163, 41, 10.1007/s11046-006-0084-z Faris-Mokaiesh, 1996, Differentiation of the “Ascochyta complex” fungi of pea by biochemical and molecular markers, Current Genetics, 29, 182, 10.1007/BF02221583 Fatehi, 2003, Molecular relatedness within the “Ascochyta pinodes-complex ”, Mycopathologia, 156, 317, 10.1023/B:MYCO.0000003573.37109.89 Fitt, 2006, World-wide importance of phoma stem canker (Leptosphaeria maculans and L. biglobosa) on oilseed rape (Brassica napus), European Journal of Plant Pathology, 114, 3, 10.1007/s10658-005-2233-5 Geiser, 2007, The current status of species recognition and identification in Aspergillus, Studies in Mycology, 59, 1, 10.3114/sim.2007.59.01 Gilmore, 2009, Multiple copies of cytochrome oxidase 1 in species of the fungal genus Fusarium, Molecular Ecology Resources, 9, 90, 10.1111/j.1755-0998.2009.02636.x Grondona, 1997, Pyrenochaeta dolichi: an example of a confusing species, Mycological Research, 101, 1405, 10.1017/S0953756297004206 Grove, 1935 de Gruyter, 2002, Contributions towards a monograph of Phoma (Coelomycetes) – IX. Section Macrospora, Persoonia, 18, 85 de Gruyter, 2002, Contributions towards a monograph of Phoma (Coelomycetes) – VIII. Section Paraphoma: Taxa with setose pycnidia, Persoonia, 17, 541 de Gruyter, 1992, Contributions towards a monograph of Phoma (Coelomycetes) – I. 1. Section Phoma: Taxa with very small conidia in vitro, Persoonia, 15, 71 de Gruyter, 1993, Contributions towards a monograph of Phoma (Coelomycetes) – I. 2. Section Phoma: Additional taxa with very small conidia and taxa with conidia up to 7 μm long, Persoonia, 15, 369 de Gruyter, 1998, Contributions towards a monograph of Phoma (Coelomycetes) – I. 3. Section Phoma: Taxa with conidia longer than 7μm, Persoonia, 16, 471 de Gruyter, 2002, Contributions towards a monograph of Phoma (Coelomycetes) – VI. 2. Section Phyllostictoides: outline of its taxa, Persoonia, 18, 1 de Gruyter, 2009, Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex, Mycological Research, 113, 508, 10.1016/j.mycres.2009.01.002 de Gruyter, 2010, Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma, Mycologia, 10.3852/09-240 Hatai, 1986, A visceral mycosis in ayu fry, Plecoglossus altivelis Temmink and Schlegel, caused by a species of Phoma, Journal of Fish Diseases, 9, 111, 10.1111/j.1365-2761.1986.tb00989.x Hawksworth, 1981, The lichenicolous Coelomycetes, Bulletin of the British Museum (Natural History), Botany series, 9, 1 Hawksworth, 2004, Phoma fuliginosa sp. nov., from Caloplaca trachyphylla in Nebraska, with a key to the known lichenous species, Lichenologist, 36, 7, 10.1017/S0024282904013982 Hebert, 2003, Biological identifications through DNA barcodes, Proceedings of the Royal Society of London B, 270, 313, 10.1098/rspb.2002.2218 Hernandez-Bello, 2006, Host specificity of Ascochyta spp. infecting legumes of the Viciae and Cicerae tribes and pathogenicity of an interspecific hybrid, Phytopathology, 96, 1148, 10.1094/PHYTO-96-1148 de Hoog, 1998, Molecular diagnostics of clinical strains of filamentous Basidiomycetes, Mycoses, 41, 183, 10.1111/j.1439-0507.1998.tb00321.x de Hoog, 2000 de Hoog, 2004, Ribosomal gene phylogeny and species delimitation in Geotrichum and its teleomorphs, Studies in Mycology, 50, 489 Holliday P, Punithalingam E (1970). Ascochyta gossypii. CMI Descriptions of pathogenic Fungi and Bacteria 271. Holm, 1962, Lewis E. Wehmeyer, a world monograph of the genus Pleospora and its segregates, Svensk Botanisk Tidskrift, 56, 377 Howlett, 2001, Leptosphaeria maculans, the causal agent of blackleg disease of brassicas, Fungal Genetics and Biology, 33, 1, 10.1006/fgbi.2001.1274 Huelsenbeck, 2001, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754 Hughes, 1953, Conidiophores, conidia and classification, Canadian Journal of Botany, 31, 577, 10.1139/b53-046 Hyde, 2007, Understanding microfungal diversity – a critique, Cryptogamie Mycologie, 28, 281 Inderbitzin, 2009, Pleospora species with Stemphylium anamorphs: a four locus phylogeny resolves new lineages yet does not distinguish among species in the Pleospora herbarum clade, Mycologia, 101, 329, 10.3852/08-071 Irinyi, 2009, Taxonomical re-evaluation of Phoma-like soybean pathogenic fungi, Mycological Research, 113, 249, 10.1016/j.mycres.2008.11.003 Johnson, 1990, DNA polymorphism in Leptosphaeria maculans, Physiological and Molecular Plant Pathology, 37, 417, 10.1016/0885-5765(90)90033-T Johnston, 1981, Phoma on New Zealand grasses and pasture legumes, New Zealand Journal of Botany, 19, 173, 10.1080/0028825X.1981.10425118 Johnston, 1981, Phoma nigricans sp. nov. and Ph. pratorum sp. nov., two common saprophytes from New Zealand, New Zealand Journal of Botany, 19, 393, 10.1080/0028825X.1981.10426396 Jones, 1976, Ultrastructure of conidium ontogeny in Phoma pomorum, Microsphaeropsis olivaceum, and Coniothyrium fuckelii, Canadian Journal of Botany, 54, 831, 10.1139/b76-087 Kaiser, 1997, Inter- and intranational spread of Ascochyta pathogens of chickpea, faba beans and lentil, Canadian Journal of Plant Pathology, 19, 215, 10.1080/07060669709500556 Kiss, 1997, Genetic diversity in Ampelomyces isolates, hyperparasites of powdery mildew fungi, inferred from RFLP analysis of the rDNA ITS region, Mycological Research, 101, 1073, 10.1017/S0953756297003705 Kiss, 1998, Ribosomal DNA internal transcribed spacer sequences do not support the species status of Ampelomyces quisqualis, a hyperparasite of powdery mildew fungi, Current Genetics, 33, 362, 10.1007/s002940050348 Kiss, 2004, Biology and biocontrol potential of Ampelomyces mycoparasites, natural antagonists of powdery mildew fungi, Biocontrol Science and Technology, 14, 635, 10.1080/09583150410001683600 Kodsueb, 2006, The family Pleosporaceae: intergeneric relationships and phylogenetic perspectives based on sequence analyses of partial 28SrDNA, Mycologia, 98, 571, 10.3852/mycologia.98.4.571 Kohlmeyer, 1987, Marine fungi from Belize with descriptions of two new genera of Ascomycetes, Botanica Marina, 30, 195, 10.1515/botm.1987.30.3.195 Kohlmeyer, 1991, Illustrated key to the filamentous higher marine fungi, Botanica Marina, 34, 1, 10.1515/botm.1991.34.1.1 Kövics, 1999, Phoma sojicola comb. nov. and other hyaline-spored coelomycetes pathogenic on soybean, Mycological Research, 103, 1065, 10.1017/S0953756298007990 Kruys, 2006, Phylogenetic relationships of coprophilous Pleosporales (Dothideomycetes, Ascomycota), and the classification of some bitunicate taxa of unknown position, Mycological Research, 110, 527, 10.1016/j.mycres.2006.03.002 Li, 2006, Phoma adonidicola sp. nov. on Adonis palaestina, Mycotaxon, 98, 237 Macdonald, 2000, Differentiation of Phoma foveata from Ph. exigua using a RAPD generated PCR-RFLP marker, European Journal of Plant Pathology, 106, 67, 10.1023/A:1008795805409 McNeill, 2006 Mel'nik, 2000, Key to the fungi of the genus Ascochyta Lib. (Coelomycetes) Mendes-Pereira, 2003, Molecular phylogeny of the Leptosphaeria maculans – L. biglobosa species complex, Mycological Research, 107, 1287, 10.1017/S0953756203008554 Monte, 1991, An integrated approach to Phoma systematics, Mycopathologia, 115, 89, 10.1007/BF00436797 Morales, 1993, Comparison of the 5.8s rDNA and internal transcribed spacer sequences of isolates of Leptosphaeria maculans from different pathogenicity groups, Current Genetics, 23, 490, 10.1007/BF00312640 Morales, 1995, Phylogenetic relationship among several Leptosphaeria species based on their ribosomal DNA sequences, Mycological Research, 99, 593, 10.1016/S0953-7562(09)80719-3 Morgan-Jones, 1988, Studies in the genus Phoma. XV. Concerning Phoma multirostrata, a leaf spot-inducing and soil-borne species in warm climates, Mycotaxon, 33, 339 Mugambi, 2009, Molecular phylogenetics of Pleosporales: Melanommataceae and Lophiostomataceae re-circumscribed (Pleosporomycetidae, Dothideomycetes, Ascomycota), Studies in Mycology, 64, 103, 10.3114/sim.2009.64.05 Mukunya, 1973, Mycosphaerella zeae-maydis sp. n., the sexual stage of Phyllosticta maydis, Phytopathology, 63, 529, 10.1094/Phyto-63-529 Muüller, 1962, Die Gattungen der didymosporen Pyrenomyceten, Beitraüge zur Kryptogamenflora der Schweiz, 11, 1 Munk, 1957, Danish Pyrenomycetes: a preliminary flora, Dansk botanisk Arkiv, 17 Muthumeenakshi, 2001, Molecular studies on intraspecific diversity and phylogenetic position of Coniothyrium minitans, Mycological Research, 105, 1065, 10.1016/S0953-7562(08)61968-1 Nag Raj, 1981, Coelomycete systematics, vol1 Naumann, 2007, Correct identification of wood-inhabiting fungi by ITS analysis, Current Trends in Biotechnology and Pharmacy, 1, 41 Nelsen, 2009, Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta, Studies in Mycology, 64, 135, 10.3114/sim.2009.64.07 Nguyen, 2008, Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States, Persoonia, 21, 57, 10.3767/003158508X361334 Nilsson, 2006, Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective, PLoS One, 1, e59, 10.1371/journal.pone.0000059 Nilsson, 2008, Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification, Evolutionary Bioinformatics Online, 4, 193 Noordeloos, 1993, Production of dendritic crystals in pure cultures of Phoma and Ascochyta and its value as a taxonomic character relative to morphology, pathology and cultural characteristics, Mycological Research, 97, 1343, 10.1016/S0953-7562(09)80168-8 Nylander, 2004 Obando-Rojas, 1989 Onfroy, 1999, Cultural, molecular and pathogenic variability of Mycosphaerella pinodes and Phoma medicaginis var. pinodella isolates from dried pea (Pisum sativum) in France, Plant Pathology, 48, 218, 10.1046/j.1365-3059.1999.00323.x Osterhage, 2000, Differences between marine and terrestrial Phoma species as determined by HPLC-DAD and HPLC-MS, Phytochemical analysis, 11, 288, 10.1002/1099-1565(200009/10)11:5<288::AID-PCA528>3.0.CO;2-G Page, 1996, TREEVIEW: An application to display phylogenetic trees on personal computers, Computer Applications in the Biosciences, 12, 357 Pande, 2005, Ascochyta blight of chickpea (Cicer arietinum L.): a review of biology pathogenicity, and disease management, Australian Journal of Agricultural Research, 56, 317, 10.1071/AR04143 Pawar, 1967, Species of Phoma isolated from marine soils in India, Transactions of the British Mycological Society, 50, 259, 10.1016/S0007-1536(67)80036-6 Pazžoutová, 2009, Genetic variation of Phoma sorghina isolates from Southern Africa and Texas, Folia Microbiologica, 54, 217, 10.1007/s12223-009-0035-4 Pedras, 2000, HPLC analyses of cultures of Phoma species: differentiation among groups and species through secondary metabolite profiles, Canadian Journal of Microbiology, 46, 685, 10.1139/cjm-46-8-685 Peever, 2007, Evolutionary relationships among Ascochyta species infecting wild and cultivated hosts in legume tribes Cicereae and Vicieae, Mycologia, 99, 59, 10.3852/mycologia.99.1.59 Pirozynski, 1968, Notes on Microfungi. III, Transaction of the British Mycological Society, 51, 185, 10.1016/S0007-1536(68)80052-X Pitt, 1979 Pitt, 2007, Nomenclatural considerations in naming species of Aspergillus and its teleomorphs, Studies in Mycology, 59, 67, 10.3114/sim.2007.59.08 Pongam, 1999, Assessment of genetic variation among Leptosphaeria maculans isolates using pathogenicity data and AFLP analysis, Plant Disease, 83, 149, 10.1094/PDIS.1999.83.2.149 Punithalingam, 1976, Phoma oculi-hominis sp. nov. from corneal ulcer, Transactions of the British Mycological Society, 67, 142, 10.1016/S0007-1536(76)80022-8 Punithalingam, 1979, Graminicolous Ascochyta species, Mycological Papers, 142, 1 Punithalingam E (1979b). Phoma caricae. CMI Descriptions of Pathogenic Fungi and Bacteria. No. 634. Punithalingam, 1980, A combination in Phoma for Ascochyta caricae-papayae, Transactions of the British Mycological Society, 75, 340, 10.1016/S0007-1536(80)80104-5 Punithalingam, 1972, Phoma epicoccina sp. nov. on Dactylis glomerata, Transactions of the British Mycological Society, 59, 341, 10.1016/S0007-1536(72)80029-9 Purwantara, 2000, Genetic diversity of isolates of the Leptosphaeria maculans species complex from Australia, Europe and North America using amplified fragment length polymorphism analysis, Mycological Research, 104, 772, 10.1017/S095375629900235X Rabie, 1975, Onyalai – the possible involvement of a mycotoxin produced by Phoma sorghina in the aetiology, South African Medical Journal, 57, 1647 Rai, 2000 Rai, 2009, Phoma Saccardo: Distribution, secondary metabolite production and biotechnological applications, Critical Reviews in Microbiology, 35, 182, 10.1080/10408410902975992 Rayner, 1970 Reddy, 1998, Phylogenetic and developmental evidence supporting reclassification of cruciferous pathogens Phoma lingam and Phoma wasabiae in Plenodomus, Canadian Journal of Botany, 76, 1916, 10.1139/b98-154 Redfern, 1981, Canker and dieback of Ulmus glabra caused by Plectophomella concentrica, and its relationship to Ph. ulmi, Transactions of the British Mycological Society, 77, 381, 10.1016/S0007-1536(81)80041-1 Rehner, 1994, Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences, Mycological Research, 98, 625, 10.1016/S0953-7562(09)80409-7 Reynolds, 1999, Capnodium citri: The sooty mold fungi comprising the taxon concept, Mycopathologia, 148, 141, 10.1023/A:1007170504903 Robert Röder, 1937, Phyllosticta cannabis (Kirchner?) Speg. Eine Nebenfruchtform von Mycosphaerella cannabis (Winter), Zeitschrift fuür Pflanzenkrankheiten (Pflanzen pathologie) und Pflanzenschutz, 47, 526 Ross, 1975, Phoma herbarum, a fungal plant saprophyte, as a fish pathogen, Journal of the Fisheries Research Board of Canada, 32, 1648, 10.1139/f75-193 Rudakov, 1979, Fungi of the genus Ampelomyces Ces. ex Schlecht, Mikologiya i Fitopatologiya, 13, 104 Ruibal, 2009, Phylogeny of rock-inhabiting fungi related to Dothideomycetes, Studies in Mycology, 64, 123, 10.3114/sim.2009.64.06 Saccardo, 1880, Conspectus generum fungorum Italiae inferiorum nempe ad Sphaeropsideas, Melanconieas et Hyphomyceteas pertinentium systemate sporologico dispositorum, Michelia, 2, 1 Saccardo, 1884, Sylloge Sphaeropsidearum et Melanconiearum omnium hucusque cognitorum, Sylloge Fungorum, 3, 1 Saccas, 1981 Salgado M, Lima CS, Almeida AR, Santos LL, Pfenning LH (2007). Primeiro relato da ocorrência de Didymella sp., fase sexuada de Phoma tarda, em Coffea arabica no Brasil. In:5. Simpósio de Pesquisa dos Cafés do Brasil, 2007,á guas de Lindóia SPh. Anais. Brasiélia DF: Embrapa Café, 2007. Schaüfer, 1992, Random primer dependent PCR differentiates aggressive from non-aggressive isolates of the oilseed rape pathogen Phoma lingam (Leptosphaeria maculans), Journal of Phytopathology, 136, 124, 10.1111/j.1439-0434.1992.tb01290.x Schneider, 1975, Phoma tropica n. sp., ein a Gewaüchshauspflanzen haüufig vorkommender, nicht pathogener Pilz, Phytopathologische Zeitschrift, 83, 239, 10.1111/j.1439-0434.1975.tb03535.x Schoch, 2006, A multigene phylogeny of the Dothideomycetes using four nuclear loci, Mycologia, 98, 1041, 10.3852/mycologia.98.6.1041 Schoch, 2009, A class-wide phylogenetic assessment of Dothideomycetes, Studies in Mycology, 64, 1, 10.3114/sim.2009.64.01 Schoch, 2009, The Ascomycota Tree of Life: A phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits, Systematic Biology, 58, 224, 10.1093/sysbio/syp020 Seifert, 2008, Integrating DNA barcoding into the mycological sciences, Persoonia, 21, 162 Seifert, 2009, Progress towards DNA barcoding of fungi, Molecular Ecology Resources, 9, 83, 10.1111/j.1755-0998.2009.02635.x Seifert, 2007, Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case, Proceedings of the National Academy of Sciences of the United States of America, 104, 3901, 10.1073/pnas.0611691104 Selbmann, 2002, Production and structural characterization of the exopolysaccharide of the Antarctic fungus Phoma herbarum CCFEE 5080, Research in Microbiology, 153, 585, 10.1016/S0923-2508(02)01372-4 Shen, 2005, Development of a PCR assay for the molecular detection of Phytophthora boehmeriae in infected cotton, Journal of Phytopathology, 153, 291, 10.1111/j.1439-0434.2005.00971.x Shearer, 2009, The molecular phylogeny of freshwater Dothideomycetes, Studies in Mycology, 64, 145, 10.3114/sim.2009.64.08 Shoemaker, 2001, The teleomorph of the weakly aggressive segregate of Leptosphaeria maculans, Canadian Journal of Botany, 79, 412, 10.1139/b01-019 Silva-Hanlin, 1999, Small subunit ribosomal RNA gene phylogeny of several Loculoascomycetes and its taxonomic implications, Mycological Research, 103, 153, 10.1017/S0953756298006972 Simmons, 1969, Perfect states of Stemphylium, Mycologia, 61, 1, 10.2307/3757341 Singh, 1993, Resistance to six races of Ascochyta rabiei in the world germplasm collection of chickpea, Crop Science, 33, 186, 10.2135/cropsci1993.0011183X003300010033x Singh, 1997, Ultrastructural studies of conidiogenesis of Ascochyta rabiei, the causal organism of chickpea blight, Phytoparasitica, 25, 291, 10.1007/BF02981093 Sivanesan, 1990, Mycosphaerella caricae. CMI Descriptions of pathogenic fungi and bacteria No. 984, Mycopathologia, 109, 47 Smith, 1992 Sørensen JL, Aveskamp MM, Thrane U, Andersen B (2009). Chemical characterization of Phoma pomorum isolated from Danish maize. International Journal of Food Microbiology, epub. ahead of print, doi: 10.1016/j.ijfoodmicro.2009.11.001. Stamatakis, 2005, RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees, Bioinformatics, 21, 456, 10.1093/bioinformatics/bti191 Stamatakis, 2008, A rapid bootstrap algorithm for the RAxML Web-Servers, Systematic Biology, 75, 758, 10.1080/10635150802429642 Stewart, 1957, Leaf blight and stem dieback of coffee caused by an undescribed species of Ascochyta, Mycologia, 49, 430, 10.2307/3755694 Suetrong, 2009, Molecular systematics of the marine Dothideomycetes, Studies in Mycology, 64, 155, 10.3114/sim.2009.64.09 Sullivan, 2000, Phoma glomerata as a mycoparasite of powdery mildew, Applied and Environmental Microbiology, 66, 425, 10.1128/AEM.66.1.425-427.2000 Summerbell, 2005, Microcoding: the second step in DNA barcoding, Philosophical Transactions of the Royal Society B, 360, 1897, 10.1098/rstb.2005.1721 Summerbell, 2007, ITS barcodes for Trichophyton tonsurans and T. equinum, Medical Mycology, 45, 193, 10.1080/13693780601087614 Sutton, 1964, Phoma and related genera, Transactions of the British Mycological Society, 47, 497, 10.1016/S0007-1536(64)80028-0 Sutton, 1977, Coelomycetes VI. Nomenclature of generic names proposed for coelomycetes, Mycological Papers, 141, 1 Sutton, 1980 Sutton, 1969, Electron microscopy of conidium development and secession in Cryptosporiopsis sp., Phoma fumosa, Melanconium bicolor and M. apiocarpum, Canadian Journal of Botany, 47, 745, 10.1139/b69-107 Szentiványi, 2005, Ampelomyces mycoparasites from apple powdery mildew identified as a distinct group based on single-stranded conformation polymorphism analysis of the rDNA ITS region, Mycological Research, 109, 429, 10.1017/S0953756204001820 Tanaka, 2009, Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs, Studies in Mycology, 64, 175, 10.3114/sim.2009.64.10 Taylor, 2007, Diagnostics, genetic diversity and pathogenic variation of ascochyta blight of cool season food and feed legumes, European Journal of Plant Pathology, 119, 127, 10.1007/s10658-007-9177-x Trapero-Casas, 1992, Development of Didymella rabiei, the teleomorph of Ascochyta rabiei, on chickpea straw, Phytopathology, 82, 1261, 10.1094/Phyto-82-1261 Torres, 2005, A new species and its phylogenetic placement in the Didymella/Phoma complex (Phaeosphaeriaceae, Pleosporales), Mycotaxon, 93, 297 Torres, 2005, Plenodomus morganjonesii sp.nov. and a discussion of the genus Plenodomus, Mycotaxon, 93, 333 Vegh, 1974, Contribution à l'étude du Phoma exigua Desm., champignon pathogène associé au dépérissement de la pervenche mineure (Vinca minor L.) médicinale, Bulletin Trimestriel de la Societe Mycologique de France, 90, 121 Verkley, 2004, Paraconiothyrium, a new genus to accommodate the mycoparasite Coniothyrium minitans, anamorphs of Paraphaeosphaeria, and four new species, Studies in Mycology, 50, 323 Vilgalys, 1990, Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species, Journal of Bacteriology, 172, 4238, 10.1128/jb.172.8.4238-4246.1990 Voigt, 2001, Strain typing of Polish Leptosphaeria maculans isolates supports at the genomic level the multispecies concept of aggressive and non-aggressive strains, Microbiological Research, 156, 169, 10.1078/0944-5013-00099 Voigt, 2005, Phylogenetic relationships between members of the crucifer pathogenic Leptosphaeria maculans species complex as shown by their mating type (MAT1-2), actin, and β-tubulin sequences, Molecular Phylogenetics and Evolution, 37, 541, 10.1016/j.ympev.2005.07.006 Voronin, 1989, Phoma Sacc. species from the water and fish of freshwater reservoirs, Mikologia i Fitopatologia, 23, 19 White, 1987, Studies in the genus Phoma. VI. Concerning Phoma medicaginis var. pinodella, Mycotaxon, 28, 241 White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315 Williams, 1999, Differentiating A and B groups of Leptosphaeria maculans, causal agent of stem canker (blackleg) of oilseed rape, Plant Pathology, 48, 161, 10.1046/j.1365-3059.1999.00333.x Wilson, 1995, Cytology and genetics of sexual incompatibility in Didymella rabiei, Mycologia, 87, 795, 10.2307/3760856 Wirsel, 2001, Genetic diversity of fungi closely associated with common reed, New Phytologist, 149, 589, 10.1046/j.1469-8137.2001.00038.x Woudenberg, 2009, Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype, Persoonia, 22, 56, 10.3767/003158509X427808 Xianshu, 1994, A fungal endophyte-tree relationship: Phoma sp. in Taxus wallachiana, Plant Science, 102, 1, 10.1016/0168-9452(94)90017-5 Yarden, 2007, Increased prefalence of ubiquitous ascomycetes in an acropoid coral (Acropora formosa) exibiting symptoms of brown band syndrome and skeletal eroding band disease, Applied and Environmental Microbiology, 73, 2755, 10.1128/AEM.02738-06 Zhang, 2009, Multi-locus phylogeny of the Pleosporales: a taxonomic, ecological and evolutionary re-evaluation, Studies in Mycology, 64, 85, 10.3114/sim.2009.64.04 van der Aa, 1979, Some pycnidial fungi occurring on Atriplex and Chenopodium, Persoonia, 10, 267 van der Aa, 1980, Phoma heteromorphospora nom. nov, Persoonia, 10, 267 Boerema, 2003, Contributions towards a monograph of Phoma (Coelomycetes) – X. Section Pilosa (Taxa with a Pleospora teleomorph) and nomenclatural notes on some other taxa, Persoonia, 18, 153 Boerema, 1981, Notes on Phoma, Transactions of the British Mycological Society, 77, 61, 10.1016/S0007-1536(81)80180-5 Cullen, 2007, Development and validation of conventional and quantitative polymerase chain reaction assays for the detection of storage rot potato pathogens, Phytophthora erythroseptica, Pythium ultimum, Phoma foveata, Journal of Phytopathology, 155, 309, 10.1111/j.1439-0434.2007.01233.x Mendes-Pereira, 1999, Characterisation of mycelial glycoproteins of the ‘Ascochyta pea complex’ (Ascochyta pisi Lib., Mycosphaerella pinodes (Berk. and Blox.) and Phoma medicaginis var. pinodella (Jones) Boerema, Agronomie, 19, 21, 10.1051/agro:19990103 Patel US, Pandey AK, Rajak RC. Chaetasbolisia indica sp.nov. from India. Mycological Research 101:335–336. Wollenweber, 1936, Beitraüge zur Kenntnis parasitaürer und saprophytotischer Pilze. I. Phomopsis, Dendrophoma, Phoma und Ascochyta und ihre Beziehung zur Fruchtfaüule, Zeitschrift fuür Parasitenkunde, 8, 561, 10.1007/BF02122094