Generation and analysis of expressed sequence tags from adductor muscle of Japanese scallop Mizuhopecten yessoensis

Adhikari, 2009, Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags, BMC Genomics, 10, 69, 10.1186/1471-2164-10-69 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Ashburner, 2000, Gene ontology: tool for the unification of biology, Gene Ontology Consortium. Nat. Genet., 25, 25 Bai, 2009, Identification of genes involved in immune response, microsatellite, and SNP markers from expressed sequence tags generated from hemocytes of freshwater pearl mussel (Hyriopsis cumingii), Mar. Biotechnol., 11, 520, 10.1007/s10126-008-9163-0 Boutet, 2008, Characterization of reproduction-specific genes in a marine bivalve mollusc: influence of maturation stage and sex on mRNA expression, Gene, 407, 130, 10.1016/j.gene.2007.10.005 Burd, 1994, Conserved structures and diversity of functions of RNA-binding proteins, Science, 265, 615, 10.1126/science.8036511 Cao, 2008, The cultural comparison of wild and farmedjuvenile yesso scallop Patinopecten yessoensis, Journal of Dalian Fisheries University, 23, 264 Chu, 2006, Profile analysis of expressed sequence tags derived from the ovary of tilapia, Oreochromis mossambicus, Aquac. Econ. Manage., 251, 537 Dong, 2007, Discovery of genes involved in defense/immunity functions in a haemocytes cDNA library from Fenneropenaeus chinensis by ESTs annotation, Aquaculture, 272, 208, 10.1016/j.aquaculture.2007.07.217 Ewing, 1998, Base-calling of automated sequencer traces using phred. I. Accuracy assessment, Genome Res., 8, 175, 10.1101/gr.8.3.175 Feng, 2010, Identification of immune genes of the Agamaki clam (Sinonovacula constricta) by sequencing and bioinformatic analysis of ESTs, Mar. Biotechnol., 12, 282, 10.1007/s10126-009-9216-z Gao, 2007, The gonadal development and reproductive cycle of Japanese scallop Patinopecten yessoensis in Tahe Bay in Dalian, Journal of Dalian Fisheries University, 22, 335 Gordon, 1998, Consed: a graphical tool for sequence finishing, Genome Res., 8, 195, 10.1101/gr.8.3.195 Gueguen, 2003, Immune gene discovery by expressed sequence tags generated from hemocytes of the bacteria-challenged oyster, Crassostrea gigas, Gene, 303, 139, 10.1016/S0378-1119(02)01149-6 Gupta, 1995, Eukaryotic DNA topoisomerases I, Biochim. Biophys. Acta, 1262, 1, 10.1016/0167-4781(95)00029-G Jenny, 2002, Potential indicators of stress response identified by expressed sequence tag analysis of hemocytes and embryos from the American oyster, Crassostrea virginica, Mar. Biotechnol., 4, 81, 10.1007/s10126-001-0072-8 Jiang, 2009, Functional annotation and analysis of expressed sequence tags from the hepatopancreas of mitten crab (Eriocheir sinensis), Mar. Biotechnol., 11, 317, 10.1007/s10126-008-9146-1 Kassavetis, 2001, The RNA polymerase III transcription initiation factor TFIIIB participates in two steps of promoter opening, EMBO J., 20, 2823, 10.1093/emboj/20.11.2823 Kim, 2008, Pancreatic lipase-related protein (PY-PLRP) highly expressed in the vitellogenic ovary of the scallop, Patinopecten yessoensis, Comp. Biochem. Physiol. B Biochem. Mol. Biol., 151, 52, 10.1016/j.cbpb.2008.05.009 Kim, 2008, Generation of expressed sequence tags for immune gene discovery and marker development in the sea squirt, Halocynthia roretzi, J. Microbiol. Biotechnol., 18, 1510 Kolarik, 2009, Identification of histone modifications in biomedical text for supporting epigenomic research, BMC Bioinformatics, 10, S28, 10.1186/1471-2105-10-S1-S28 La Claire, 2006, Analysis of expressed sequence tags from the harmful alga, Prymnesium parvum (Prymnesiophyceae, Haptophyta), Mar. Biotechnol., 8, 534, 10.1007/s10126-005-5182-2 Li, 2007, Preliminary study on a potential antibacterial peptide derived from histone H2A in hemocytes of scallop Chlamys farreri, Fish Shellfish Immunol., 22, 663, 10.1016/j.fsi.2006.08.013 Li, 2006, Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B, DNA Seq., 17, 440, 10.1080/10425170600752593 Nguyen, 1998, Assembly of the QM protein onto the 60S ribosomal subunit occurs in the cytoplasm, J. Cell. Biochem., 68, 281, 10.1002/(SICI)1097-4644(19980201)68:2<281::AID-JCB14>3.0.CO;2-I Paz, 1989, The primary structure of rat ribosomal protein L26, FEBS Lett., 251, 89, 10.1016/0014-5793(89)81434-6 Quilang, 2007, Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers, BMC Genomics, 8, 157, 10.1186/1471-2164-8-157 Ranganathan, 2007, A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus, BMC Genomics, 8, 311, 10.1186/1471-2164-8-311 Rice, 2000, EMBOSS: the European Molecular Biology Open Software Suite, Trends Genet., 16, 276, 10.1016/S0168-9525(00)02024-2 Roberts, 2003, Expressed sequence tag analysis of genes expressed in the bay scallop, Argopecten irradians, Biol. Bull., 205, 227, 10.2307/1543266 Shao, 2009, Construction and characterization of a cDNA library from head kidney of Japanese sea bass (Lateolabrax japonicus), Mol. Biol. Rep., 36, 2031, 10.1007/s11033-009-9536-0 Song, 2006, Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians, Mar. Biotechnol., 8, 161, 10.1007/s10126-005-0126-4 Supungul, 2002, Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon), Mar. Biotechnol., 4, 487, 10.1007/s10126-002-0043-8 Tanguy, 2004, Discovery of genes expressed in response to Perkinsus marinus challenge in Eastern (Crassostrea virginica) and Pacific (C. gigas) oysters, Gene, 338, 121, 10.1016/j.gene.2004.05.019 Tatusov, 1997, A genomic perspective on protein families, Science, 278, 631, 10.1126/science.278.5338.631 Wang, 2009, Expressed sequence tags from the zhikong scallop (Chlamys farreri): discovery and annotation of host-defense genes, Fish Shellfish Immunol., 26, 744, 10.1016/j.fsi.2009.03.002 Yang, 2009, Analysis of expressed sequence tags from body wall, intestine and respiratory tree of sea cucumber (Apostichopus japonicus), Aquaculture, 296, 193, 10.1016/j.aquaculture.2009.08.016 Zhang, 2009, Analysis of effect of body shape traits on soft-tissue weight and adductor weight in Patinopecten yessoensis Jay, Journal of Fisheries of China, 33, 87 Zhang, 2007, Feeding physiology of scallop Patinopecten yessoensis and population filtering capacity in Zhang Zidao Island aquacultural area, Journal of Jishou University (Natural Science Edition), 28, 85 Zhao, 2009, Discovery of immune-related genes in Chinese mitten crab (Eriocheir sinensis) by expressed sequence tag analysis of haemocytes, Aquaculture, 287, 297, 10.1016/j.aquaculture.2008.10.050