Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study

Lancet Respiratory Medicine,The - Tập 2 - Trang 548-556 - 2014
MeiLan K Han1, Yueren Zhou1, Susan Murray1, Nabihah Tayob1, Imre Noth2, Vibha N Lama1, Bethany B Moore1, Eric S White1, Kevin R Flaherty1, Gary B Huffnagle1, Fernando J Martinez1
1University of Michigan Health System, Ann Arbor, MI, USA
2University of Chicago, Chicago, IL, USA

Tài liệu tham khảo

Noth, 2013, Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study, Lancet Respir Med, 1, 309, 10.1016/S2213-2600(13)70045-6 Fingerlin, 2013, Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis, Nat Genet, 45, 1409, 10.1038/ng1113-1409a O'Dwyer, 2013, The toll-like receptor 3 L412F polymorphism and disease progression in idiopathic pulmonary fibrosis, Am J Respir Crit Care Med, 188, 1442, 10.1164/rccm.201304-0760OC Peljto, 2013, Association between the MUC5B promoter polymorphism and survival in patients with idiopathic pulmonary fibrosis, JAMA, 309, 2232, 10.1001/jama.2013.5827 Herazo-Maya, 2013, Peripheral blood mononuclear cell gene expression profiles predict poor outcome in idiopathic pulmonary fibrosis, Sci Transl Med, 5, 205ra136, 10.1126/scitranslmed.3005964 Gilani, 2010, CD28 down-regulation on circulating CD4 T-cells is associated with poor prognoses of patients with idiopathic pulmonary fibrosis, PLoS One, 5, e8959, 10.1371/journal.pone.0008959 Rosas, 2008, MMP1 and MMP7 as potential peripheral blood biomarkers in idiopathic pulmonary fibrosis, PLoS Med, 5, e93, 10.1371/journal.pmed.0050093 Molyneaux, 2013, The role of infection in the pathogenesis of idiopathic pulmonary fibrosis, Eur Respir Rev, 22, 376, 10.1183/09059180.00000713 Shulgina, 2013, Treating idiopathic pulmonary fibrosis with the addition of co-trimoxazole: a randomised controlled trial, Thorax, 68, 155, 10.1136/thoraxjnl-2012-202403 Han, 2012, Significance of the microbiome in obstructive lung disease, Thorax, 67, 456, 10.1136/thoraxjnl-2011-201183 Naik, 2012, Periostin promotes fibrosis and predicts progression in patients with idiopathic pulmonary fibrosis, Am J Physiol Lung Cell Mol Physiol, 303, L1046, 10.1152/ajplung.00139.2012 Mason, 2012, Candida albicans and bacterial microbiota interactions in the cecum during recolonization following broad-spectrum antibiotic therapy, Infect Immun, 80, 3371, 10.1128/IAI.00449-12 Daigle, 2011, High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems, Curr Protoc Mol Biol, 10.1002/0471142727.mb0705s96 Raghu, 2011, An official ATS/ERS/JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management, Am J Respir Crit Care Med, 183, 788, 10.1164/rccm.2009-040GL Flaherty, 2007, Idiopathic interstitial pneumonia: do community and academic physicians agree on diagnosis?, Am J Respir Crit Care Med, 175, 1054, 10.1164/rccm.200606-833OC Flaherty, 2004, Idiopathic interstitial pneumonia: what is the effect of a multidisciplinary approach to diagnosis?, Am J Respir Crit Care Med, 170, 904, 10.1164/rccm.200402-147OC Collard, 2007, Acute exacerbations of idiopathic pulmonary fibrosis, Am J Respir Crit Care Med, 176, 636, 10.1164/rccm.200703-463PP Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl Environ Microbiol, 75, 7537, 10.1128/AEM.01541-09 Hastie, 2009 Tian, 2011, Adaptive index models for marker-based risk stratification, Biostatistics, 12, 68, 10.1093/biostatistics/kxq047 Han, 2008, Sex differences in physiological progression of idiopathic pulmonary fibrosis, Eur Respir J, 31, 1183, 10.1183/09031936.00165207 2012, Evaluation of 16S rDNA-based community profiling for human microbiome research, PLoS One, 7, e39315, 10.1371/journal.pone.0039315 Maher, 2007, Idiopathic pulmonary fibrosis: multiple causes and multiple mechanisms?, Eur Respir J, 30, 835, 10.1183/09031936.00069307 2012, Prednisone, azathioprine, and N-acetylcysteine for pulmonary fibrosis, N Engl J Med, 366, 1968, 10.1056/NEJMoa1113354 McMillan, 2008, Exacerbation of established pulmonary fibrosis in a murine model by gammaherpesvirus, Am J Respir Crit Care Med, 177, 771, 10.1164/rccm.200708-1184OC Wootton, 2011, Viral infection in acute exacerbation of idiopathic pulmonary fibrosis, Am J Respir Crit Care Med, 183, 1698, 10.1164/rccm.201010-1752OC Konishi, 2009, Gene expression profiles of acute exacerbations of idiopathic pulmonary fibrosis, Am J Respir Crit Care Med, 180, 167, 10.1164/rccm.200810-1596OC Erb-Downward, 2011, Analysis of the lung microbiome in the “healthy” smoker and in COPD, PLoS One, 6, e16384, 10.1371/journal.pone.0016384 Hilty, 2010, Disordered microbial communities in asthmatic airways, PLoS One, 5, e8578, 10.1371/journal.pone.0008578 Huang, 2010, A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations, OMICS, 14, 9, 10.1089/omi.2009.0100 Garzoni, 2013, Microbial communities in the respiratory tract of patients with interstitial lung disease, Thorax, 68, 1150, 10.1136/thoraxjnl-2012-202917 Richter, 2009, Pulmonary infection in Wegener granulomatosis and idiopathic pulmonary fibrosis, Thorax, 64, 692, 10.1136/thx.2008.110445 Varney, 2008, A double blind randomised placebo controlled pilot study of oral co-trimoxazole in advanced fibrotic lung disease, Pulm Pharmacol Ther, 21, 178, 10.1016/j.pupt.2007.02.001 Trujillo, 2010, TLR9 differentiates rapidly from slowly progressing forms of idiopathic pulmonary fibrosis, Sci Transl Med, 2, 57ra82, 10.1126/scitranslmed.3001510 Parker, 2012, Staphylococcus aureus induces type I IFN signaling in dendritic cells via TLR9, J Immunol, 189, 4040, 10.4049/jimmunol.1201055 Raghu, 2006, High prevalence of abnormal acid gastro-oesophageal reflux in idiopathic pulmonary fibrosis, Eur Respir J, 27, 136, 10.1183/09031936.06.00037005 Morris, 2013, Comparison of the respiratory microbiome in healthy nonsmokers and smokers, Am J Respir Crit Care Med, 187, 1067, 10.1164/rccm.201210-1913OC Raghu, 2012, Idiopathic pulmonary fibrosis: clinically meaningful primary endpoints in phase 3 clinical trials, Am J Respir Crit Care Med, 185, 1044, 10.1164/rccm.201201-0006PP