Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development
Tài liệu tham khảo
Allène, 2008, Sequential generation of two distinct synapse-driven network patterns in developing neocortex, J. Neurosci., 28, 12851, 10.1523/JNEUROSCI.3733-08.2008
Ben-Ari, 2001, Developing networks play a similar melody, Trends Neurosci., 24, 353, 10.1016/S0166-2236(00)01813-0
Birey, 2017, Assembly of functionally integrated human forebrain spheroids, Nature, 545, 54, 10.1038/nature22330
Blankenship, 2010, Mechanisms underlying spontaneous patterned activity in developing neural circuits, Nat. Rev. Neurosci., 11, 18, 10.1038/nrn2759
Butler, 2018, Integrating single-cell transcriptomic data across different conditions, technologies, and species, Nat. Biotechnol., 36, 411, 10.1038/nbt.4096
Buzsáki, 2004, Large-scale recording of neuronal ensembles, Nat. Neurosci., 7, 446, 10.1038/nn1233
Buzsáki, 2004, Neuronal oscillations in cortical networks, Science, 304, 1926, 10.1126/science.1099745
Buzsáki, 2012, The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes, Nat. Rev. Neurosci., 13, 407, 10.1038/nrn3241
Buzsáki, 2013, Scaling brain size, keeping timing: evolutionary preservation of brain rhythms, Neuron, 80, 751, 10.1016/j.neuron.2013.10.002
Camp, 2015, Human cerebral organoids recapitulate gene expression programs of fetal neocortex development, Proc. Natl. Acad. Sci. USA, 112, 15672, 10.1073/pnas.1520760112
Cederquist, 2019, Specification of positional identity in forebrain organoids, Nat. Biotechnol., 37, 436, 10.1038/s41587-019-0085-3
de Hemptinne, 2015, Therapeutic deep brain stimulation reduces cortical phase-amplitude coupling in Parkinson’s disease, Nat. Neurosci., 18, 779, 10.1038/nn.3997
Farahany, 2018, The ethics of experimenting with human brain tissue, Nature, 556, 429, 10.1038/d41586-018-04813-x
Fries, 2005, A mechanism for cognitive dynamics: neuronal communication through neuronal coherence, Trends Cogn. Sci., 9, 474, 10.1016/j.tics.2005.08.011
Gao, 2017, Inferring synaptic excitation/inhibition balance from field potentials, Neuroimage, 158, 70, 10.1016/j.neuroimage.2017.06.078
Gertsman, 2014, Validation of a dual LC-HRMS platform for clinical metabolic diagnosis in serum, bridging quantitative analysis and untargeted metabolomics, Metabolomics, 10, 312, 10.1007/s11306-013-0582-1
Giandomenico, 2019, Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output, Nat. Neurosci., 22, 669, 10.1038/s41593-019-0350-2
Haller, 2018, Parameterizing neural power spectra, bioRxiv
Henriques, 1991, Left frontal hypoactivation in depression, J. Abnorm. Psychol., 100, 535, 10.1037/0021-843X.100.4.535
Johnson, 2001, Functional brain development in humans, Nat. Rev. Neurosci., 2, 475, 10.1038/35081509
Kelava, 2016, Stem cell models of human brain development, Cell Stem Cell, 18, 736, 10.1016/j.stem.2016.05.022
Khan, 2013, Local and long-range functional connectivity is reduced in concert in autism spectrum disorders, Proc. Natl. Acad. Sci. USA, 110, 3107, 10.1073/pnas.1214533110
Khazipov, 2006, Early patterns of electrical activity in the developing cerebral cortex of humans and rodents, Trends Neurosci., 29, 414, 10.1016/j.tins.2006.05.007
Lancaster, 2014, Generation of cerebral organoids from human pluripotent stem cells, Nat. Protoc., 9, 2329, 10.1038/nprot.2014.158
Lancaster, 2013, Cerebral organoids model human brain development and microcephaly, Nature, 501, 373, 10.1038/nature12517
Lisman, 1997, Bursts as a unit of neural information: making unreliable synapses reliable, Trends Neurosci., 20, 38, 10.1016/S0166-2236(96)10070-9
Luo, 2016, Cerebral organoids recapitulate epigenomic signatures of the human fetal brain, Cell Rep., 17, 3369, 10.1016/j.celrep.2016.12.001
Manning, 2009, Broadband shifts in local field potential power spectra are correlated with single-neuron spiking in humans, J. Neurosci., 29, 13613, 10.1523/JNEUROSCI.2041-09.2009
Mariani, 2012, Modeling human cortical development in vitro using induced pluripotent stem cells, Proc. Natl. Acad. Sci. USA, 109, 12770, 10.1073/pnas.1202944109
McInnes, 2018, UMAP: uniform manifold approximation and projection for dimension reduction, arXiv
Miller, 2007, Spectral changes in cortical surface potentials during motor movement, J. Neurosci., 27, 2424, 10.1523/JNEUROSCI.3886-06.2007
Moore, 2019, Setd5 haploinsufficiency alters neuronal network connectivity and leads to autistic-like behaviors in mice, Transl. Psychiatry, 9, 24, 10.1038/s41398-018-0344-y
Mukamel, 2005, Coupling between neuronal firing, field potentials, and FMRI in human auditory cortex, Science, 309, 951, 10.1126/science.1110913
Murrell, 2005
Nageshappa, 2016, Altered neuronal network and rescue in a human MECP2 duplication model, Mol. Psychiatry, 21, 178, 10.1038/mp.2015.128
Opitz, 2002, Spontaneous development of synchronous oscillatory activity during maturation of cortical networks in vitro, J. Neurophysiol., 88, 2196, 10.1152/jn.00316.2002
Pașca, 2018, The rise of three-dimensional human brain cultures, Nature, 553, 437, 10.1038/nature25032
Paşca, 2015, Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture, Nat. Methods, 12, 671, 10.1038/nmeth.3415
Pedregosa, 2011, Scikit-learn: machine learning in Python, J. Mach. Learn. Res., 12, 2825
Power, 2010, The development of human functional brain networks, Neuron, 67, 735, 10.1016/j.neuron.2010.08.017
Qian, 2016, Brain-region-specific organoids using mini-bioreactors for modeling ZIKV exposure, Cell, 165, 1238, 10.1016/j.cell.2016.04.032
Quadrato, 2017, Cell diversity and network dynamics in photosensitive human brain organoids, Nature, 545, 48, 10.1038/nature22047
Quiroga, 2005, Invariant visual representation by single neurons in the human brain, Nature, 435, 1102, 10.1038/nature03687
Renner, 2017, Self-organized developmental patterning and differentiation in cerebral organoids, EMBO J., 36, 1316, 10.15252/embj.201694700
Schevon, 2012, Evidence of an inhibitory restraint of seizure activity in humans, Nat. Commun., 3, 1060, 10.1038/ncomms2056
Stevenson, 2017, Functional maturation in preterm infants measured by serial recording of cortical activity, Sci. Rep., 7, 12969, 10.1038/s41598-017-13537-3
Stuart, 2019, Comprehensive integration of single-cell data, Cell, 177, 1888, 10.1016/j.cell.2019.05.031
Tang, 2016, KCC2 rescues functional deficits in human neurons derived from patients with Rett syndrome, Proc. Natl. Acad. Sci. USA, 113, 751, 10.1073/pnas.1524013113
Tetzlaff, 2010, Self-organized criticality in developing neuronal networks, PLoS Comput. Biol., 6, e1001013, 10.1371/journal.pcbi.1001013
Thomas, 2017, Modeling of TREX1-dependent autoimmune disease using human stem cells highlights L1 accumulation as a source of neuroinflammation, Cell Stem Cell, 21, 319, 10.1016/j.stem.2017.07.009
Tolonen, 2007, Development of the spontaneous activity transients and ongoing cortical activity in human preterm babies, Neuroscience, 145, 997, 10.1016/j.neuroscience.2006.12.070
Tort, 2010, Measuring phase-amplitude coupling between neuronal oscillations of different frequencies, J. Neurophysiol., 104, 1195, 10.1152/jn.00106.2010
Uhlhaas, 2010, Abnormal neural oscillations and synchrony in schizophrenia, Nat. Rev. Neurosci., 11, 100, 10.1038/nrn2774
Uhlhaas, 2010, Neural synchrony and the development of cortical networks, Trends Cogn. Sci., 14, 72, 10.1016/j.tics.2009.12.002
Uylings, 2002, Structural and immunocytochemical differentiation of neurons in prenatal and postnatal human prefrontal cortex, Neuroembryology, 1, 176, 10.1159/000066268
van de Leemput, 2014, CORTECON: a temporal transcriptome analysis of in vitro human cerebral cortex development from human embryonic stem cells, Neuron, 83, 51, 10.1016/j.neuron.2014.05.013
Van Hove, 2014, Disorders of glycine, serine, GABA, and proline metabolism, 63
Voytek, 2015, Dynamic network communication as a unifying neural basis for cognition, development, aging, and disease, Biol. Psychiatry, 77, 1089, 10.1016/j.biopsych.2015.04.016
Voytek, 2015, Oscillatory dynamics coordinating human frontal networks in support of goal maintenance, Nat. Neurosci., 18, 1318, 10.1038/nn.4071
Wickham, 2016
Xiang, 2017, Fusion of regionally specified hPSC-derived organoids models human brain development and interneuron migration, Cell Stem Cell, 21, 383, 10.1016/j.stem.2017.07.007
Xiang, 2019, hESC-derived thalamic organoids form reciprocal projections when fused with cortical organoids, Cell Stem Cell, 24, 487, 10.1016/j.stem.2018.12.015
Yoon, 2019, Reliability of human cortical organoid generation, Nat. Methods, 16, 75, 10.1038/s41592-018-0255-0
Zerbino, 2018, Ensembl 2018, Nucleic Acids Res., 46, D754, 10.1093/nar/gkx1098
Zheng, 2017, Massively parallel digital transcriptional profiling of single cells, Nat. Commun., 8, 14049, 10.1038/ncomms14049