Effects of metabolic pathway gene copy numbers on the biosynthesis of (2S)-naringenin in Saccharomyces cerevisiae
Tài liệu tham khảo
Cao, 2020, Building microbial factories for the production of aromatic amino acid pathway derivatives: From commodity chemicals to plant-sourced natural products, Metab. Eng., 58, 94, 10.1016/j.ymben.2019.08.008
Dai, 2013, Metabolic engineering of Saccharomyces cerevisiae for production of ginsenosides, Metab. Eng., 20, 146, 10.1016/j.ymben.2013.10.004
Dixon, 2010, Flavonoids and isoflavonoids: from plant biology to agriculture and neuroscience, Plant. Physiol., 154, 453, 10.1104/pp.110.161430
Dixon, 1999, Flavonoids and isoflavonoids – a gold mine for metabolic engineering, Trends. Plant. Sci., 4, 394, 10.1016/S1360-1385(99)01471-5
Entian, 2007, 25 Yeast Genetic Strain and Plasmid Collections, Method. Microbiol., 36, 629, 10.1016/S0580-9517(06)36025-4
Fowler, 2009, Biosynthesis and biotechnological production of flavanones: current state and perspectives, Appl. Microbiol. Biotechnol., 83, 799, 10.1007/s00253-009-2039-z
Gao, 2020, Efficient biosynthesis of (2S)-naringenin from p-coumaric acid in Saccharomyces cerevisiae, J. Agric. Food. Chem., 68, 1015, 10.1021/acs.jafc.9b05218
Gao, 2020, Promoter-library-based pathway optimization for efficient (2S)-naringenin production from p-coumaric acid in Saccharomyces cerevisiae, J. Agric. Food Chem., 68, 6884, 10.1021/acs.jafc.0c01130
Gibson, 2009, Enzymatic assembly of DNA molecules up to several hundred kilobases, Nat. Methods., 6, 343, 10.1038/nmeth.1318
Gietz, 2007, High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method, Nat. Protoc., 2, 31, 10.1038/nprot.2007.13
Hartmann, 2003, Evolution of feedback-inhibited β/α barrel isoenzymes by gene duplication and a single mutation, Proc. Natl. Acad. Sci. U. S. A., 100, 862, 10.1073/pnas.0337566100
Havsteen, 2002, The biochemistry and medical significance of the flavonoids, Pharmacol. Ther., 96, 67, 10.1016/S0163-7258(02)00298-X
Hou, 2018, Wicket: A Versatile Tool for the Integration and Optimization of Exogenous Pathways in Saccharomyces cerevisiae, ACS. Synth. Biol., 7, 782, 10.1021/acssynbio.7b00391
Iida, 2019, RNA polymerase I activators count and adjust ribosomal RNA gene copy number, Mol. Cell., 73, 645, 10.1016/j.molcel.2018.11.029
Kaur, 2020, CRISPR/Cas9 directed editing of lycopene epsilon-cyclase modulates metabolic flux for beta-carotene biosynthesis in banana fruit, Metab. Eng., 59, 76, 10.1016/j.ymben.2020.01.008
Khan, 2019, Flavonoids nanoparticles in cancer: Treatment, prevention and clinical prospects, Semin. Cancer. Biol.
Kobayashi, 2004, SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast, Cell., 117, 441, 10.1016/S0092-8674(04)00414-3
Koopman, 2012, De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae, Microb. Cell Fact., 11, 155, 10.1186/1475-2859-11-155
Li, 2019, Synthetic biology approaches for chromosomal integration of genes and pathways in industrial microbial systems, Biotechnol. Adv., 37, 730, 10.1016/j.biotechadv.2019.04.002
Li, 2019, Improving lycopene production in Saccharomyces cerevisiae through optimizing pathway and chassis metabolism, Chem. Eng. Sci., 193, 364, 10.1016/j.ces.2018.09.030
Lian, 2018, Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications, Metab. Eng., 50, 85, 10.1016/j.ymben.2018.04.011
Liu, 2019, Rewiring carbon metabolism in yeast for high level production of aromatic chemicals, Nat. Commun., 10, 4976, 10.1038/s41467-019-12961-5
Luttik, 2008, Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: quantification of metabolic impact, Metab. Eng., 10, 141, 10.1016/j.ymben.2008.02.002
Lv, 2019, Optimizing oleaginous yeast cell factories for flavonoids and hydroxylated flavonoids biosynthesis, ACS. Synth. Biol., 8, 2514, 10.1021/acssynbio.9b00193
Lyu, 2017, Enhancement of naringenin biosynthesis from tyrosine by metabolic engineering of Saccharomyces cerevisiae, J. Agric. Food Chem., 65, 6638, 10.1021/acs.jafc.7b02507
Maury, 2016, EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae, PLoS. One., 11, e0150394, 10.1371/journal.pone.0150394
Najmanova, 2019, The pharmacokinetics of flavanones, Crit. Rev. Food. Sci. Nutr., 1
Ostergaard, 2000, Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network, Nat. Biotechnol., 18, 1283, 10.1038/82400
Parekh, 1996, An integrating vector for tunable, high copy, stable integration into the dispersed Ty delta sites of Saccharomyces cerevisiae, Biotechnol. Prog., 12, 16, 10.1021/bp9500627
Park, 2019, Development of an efficient cytosolic isobutanol production pathway in Saccharomyces cerevisiae by optimizing copy numbers and expression of the pathway genes based on the toxic effect of alpha-acetolactate, Sci. Rep., 9, 3996, 10.1038/s41598-019-40631-5
Rodriguez, 2015, Establishment of a yeast platform strain for production of p-coumaric acid through metabolic engineering of aromatic amino acid biosynthesis, Metab. Eng., 31, 181, 10.1016/j.ymben.2015.08.003
Rodriguez, 2017, Metabolic engineering of yeast for fermentative production of flavonoids, Bioresour. Technol., 245, 1645, 10.1016/j.biortech.2017.06.043
Shao, 2009, DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways, Nucleic. Acids. Res., 37, e16, 10.1093/nar/gkn991
Shi, 2016, A highly efficient single-step, markerless strategy for multi-copy chromosomal integration of large biochemical pathways in Saccharomyces cerevisiae, Metab. Eng., 33, 19, 10.1016/j.ymben.2015.10.011
Sung, 2006, Mechanism of homologous recombination: mediators and helicases take on regulatory functions, Nat Rev Mol Cell Biol., 7, 739, 10.1038/nrm2008
Teste, 2009, Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae, BMC. Mol. Biol., 10, 99, 10.1186/1471-2199-10-99
Thaiss, 2016, Persistent microbiome alterations modulate the rate of post-dieting weight regain, Nature., 540, 544, 10.1038/nature20796
Tyo, 2009, Stabilized gene duplication enables long-term selection-free heterologous pathway expression, Nat Biotechnol, 27, 760, 10.1038/nbt.1555
Ulusoy, 2019, A minireview of quercetin: from its metabolism to possible mechanisms of its biological activities, Crit Rev Food Sci Nutr, 1
Vanegas, 2018, Indirect and direct routes to C-glycosylated flavones in Saccharomyces cerevisiae, Microb. Cell. Fact., 17, 107, 10.1186/s12934-018-0952-5
Wang, 2011, Metabolic engineering of flavonoids in plants and microorganisms, Appl. Microbiol. Biotechnol., 91, 949, 10.1007/s00253-011-3449-2
Wingler, 2011, Reiterative recombination for the in vivo assembly of libraries of multigene pathways, Proc. Natl. Acad. Sci. U. S. A., 108, 15135, 10.1073/pnas.1100507108
Wu, 2013, Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy, Metab. Eng., 16, 48, 10.1016/j.ymben.2012.11.009
Xie, 2014, Construction of a controllable beta-carotene biosynthetic pathway by decentralized assembly strategy in Saccharomyces cerevisiae, Biotechnol. Bioeng., 111, 125, 10.1002/bit.25002
Zhang, 2015, Refactoring β-amyrin synthesis in Saccharomyces cerevisiae, AIChE. Journal., 61, 3172, 10.1002/aic.14950
Zhang, 2019, The protective role of phloretin against dextran sulfate sodium-induced ulcerative colitis in mice, Food. Funct., 10, 422, 10.1039/C8FO01699B
Zhu, 2018, Boosting 11-oxo-beta-amyrin and glycyrrhetinic acid synthesis in Saccharomyces cerevisiae via pairing novel oxidation and reduction system from legume plants, Metab. Eng., 45, 43, 10.1016/j.ymben.2017.11.009