Discovery of virulence factors of pathogenic bacteria

Current Opinion in Chemical Biology - Tập 12 - Trang 93-101 - 2008
Hsing-Ju Wu1, Andrew H-J Wang1, Michael P Jennings2
1Institute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan
2School of Molecular and Microbial Sciences & Centre for Metals in Biology, The University of Queensland, Brisbane 4072, Australia

Tài liệu tham khảo

Mahan, 1993, Selection of bacterial virulence genes that are specifically induced in host tissues, Science, 259, 686, 10.1126/science.8430319 Hensel, 1995, Simultaneous identification of bacterial virulence genes by negative selection, Science, 269, 400, 10.1126/science.7618105 Finlay, 1997, Common themes in microbial pathogenicity revisited, Microbiol Mol Biol Rev, 61, 136, 10.1128/.61.2.136-169.1997 Chen, 2005, VFDB: a reference database for bacterial virulence factors, Nucleic Acids Res, 33, D325, 10.1093/nar/gki008 Tomich, 2007, The tad locus: postcards from the widespread colonization island, Nat Rev Microbiol, 5, 363, 10.1038/nrmicro1636 China, 1999, Secretion of virulence factors by Escherichia coli, Vet Res, 30, 181 van Ulsen, 2006, A novel phase-variable autotransporter serine protease, AusI, of Neisseria meningitidis, Microbes Infect, 8, 2088, 10.1016/j.micinf.2006.03.007 Dautin, 2007, Protein secretion in Gram-negative bacteria via the autotransporter pathway, Annu Rev Microbiol, 61, 89, 10.1146/annurev.micro.61.080706.093233 Resch, 2006, Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling, Proteomics, 6, 1867, 10.1002/pmic.200500531 Newman, 2006, Identification and characterization of a novel bacterial virulence factor that shares homology with mammalian Toll/interleukin-1 receptor family proteins, Infect Immun, 74, 594, 10.1128/IAI.74.1.594-601.2006 Fraser, 2005, Application of microbial genomic science to advanced therapeutics, Annu Rev Med, 56, 459, 10.1146/annurev.med.56.062904.144853 Raskin, 2006, Bacterial genomics and pathogen evolution, Cell, 124, 703, 10.1016/j.cell.2006.02.002 Musser, 2005, Toward a genome-wide systems biology analysis of host-pathogen interactions in group A Streptococcus, Am J Pathol, 167, 1461, 10.1016/S0002-9440(10)61232-1 Ribeiro-Guimaraes, 2007, Comparative genomics of mycobacterial proteases, Microb Pathog, 43, 173, 10.1016/j.micpath.2007.05.010 Yen, 2007, Identification and characterization of autotransporter proteins of Yersinia pestis KIM, Mol Membr Biol, 24, 28, 10.1080/09687860600927626 Lloyd, 2007, Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli, J Bacteriol, 189, 3532, 10.1128/JB.01744-06 Cassat, 2006, Transcriptional profiling of a Staphylococcus aureus clinical isolate and its isogenic agr and sarA mutants reveals global differences in comparison to the laboratory strain RN6390, Microbiology, 152, 3075, 10.1099/mic.0.29033-0 Vandahl, 2004, Genome and proteome analysis of Chlamydia, Proteomics, 4, 2831, 10.1002/pmic.200400940 Hecker, 2003, Proteomics of Staphylococcus aureus—current state and future challenges, J Chromatogr B Analyt Technol Biomed Life Sci, 787, 179, 10.1016/S1570-0232(02)00907-8 Lamont, 2006, Mass spectrometry-based proteomics and its application to studies of Porphyromonas gingivalis invasion and pathogenicity, Infect Disord Drug Targets, 6, 311, 10.2174/187152606778249935 Gatlin, 2006, Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus, Proteomics, 6, 1530, 10.1002/pmic.200500253 Cullen, 2005, Surfaceome of Leptospira spp., Infect Immun, 73, 4853, 10.1128/IAI.73.8.4853-4863.2005 Ferrari, 2006, Outer membrane vesicles from group B Neisseria meningitidis delta gna33 mutant: proteomic and immunological comparison with detergent-derived outer membrane vesicles, Proteomics, 6, 1856, 10.1002/pmic.200500164 Lee, 2007, Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli, Proteomics, 7, 3143, 10.1002/pmic.200700196 Chitlaru, 2006, Differential proteomic analysis of the Bacillus anthracis secretome: distinct plasmid and chromosome CO2-dependent cross talk mechanisms modulate extracellular proteolytic activities, J Bacteriol, 188, 3551, 10.1128/JB.188.10.3551-3571.2006 Adkins, 2006, Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions, Mol Cell Proteomics, 5, 1450, 10.1074/mcp.M600139-MCP200 Chuang, 2005, Proteomic analysis of proteins expressed by Helicobacter pylori under oxidative stress, Proteomics, 5, 3895, 10.1002/pmic.200401232 Zhang, 2007, Group A Streptococcus cell-associated pathogenic proteins as revealed by growth in hyaluronic acid-enriched media, Proteomics, 7, 1379, 10.1002/pmic.200600578 Rodriguez-Ortega, 2006, Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome, Nat Biotechnol, 24, 191, 10.1038/nbt1179 Encheva, 2006, Comparison of extraction procedures for proteome analysis of Streptococcus pneumoniae and a basic reference map, Proteomics, 6, 3306, 10.1002/pmic.200500744 Cho, 2006, ICAT-based comparative proteomic analysis of non-replicating persistent Mycobacterium tuberculosis, Tuberculosis (Edinb), 86, 445, 10.1016/j.tube.2005.10.002 Nanduri, 2006, Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome, J Proteome Res, 5, 572, 10.1021/pr050360r Zaharik, 2004, The Salmonella enterica serovar typhimurium divalent cation transport systems MntH and SitABCD are essential for virulence in an Nramp1G169 murine typhoid model, Infect Immun, 72, 5522, 10.1128/IAI.72.9.5522-5525.2004 Gat, 2005, The solute-binding component of a putative Mn(II) ABC transporter (MntA) is a novel Bacillus anthracis virulence determinant, Mol Microbiol, 58, 533, 10.1111/j.1365-2958.2005.04848.x Janulczyk, 2003, MtsABC is important for manganese and iron transport, oxidative stress resistance, and virulence of Streptococcus pyogenes, Infect Immun, 71, 2656, 10.1128/IAI.71.5.2656-2664.2003 McAllister, 2004, Molecular analysis of the psa permease complex of Streptococcus pneumoniae, Mol Microbiol, 53, 889, 10.1111/j.1365-2958.2004.04164.x Tseng, 2001, Accumulation of manganese in Neisseria gonorrhoeae correlates with resistance to oxidative killing by superoxide anion and is independent of superoxide dismutase activity, Mol Microbiol, 40, 1175, 10.1046/j.1365-2958.2001.02460.x Seib, 2004, Defenses against oxidative stress in Neisseria gonorrhoeae and Neisseria meningitidis: distinctive systems for different lifestyles, J Infect Dis, 190, 136, 10.1086/421299 Tseng, 2002, Virulence of Streptococcus pneumoniae: psaA mutants are hypersensitive to oxidative stress, Infect Immun, 70, 1635, 10.1128/IAI.70.3.1635-1639.2002 Aggarwal, 2005, Quantitative analysis of protein expression using amine-specific isobaric tags in Escherichia coli cells expressing rhsA elements, Proteomics, 5, 2297, 10.1002/pmic.200401231 Radosevich, 2007, Proteome and differential expression analysis of membrane and cytosolic proteins from Mycobacterium avium subsp. paratuberculosis strains K-10 and 187, J Bacteriol, 189, 1109, 10.1128/JB.01420-06 Szymanski, 2005, Protein glycosylation in bacterial mucosal pathogens, Nat Rev Microbiol, 3, 225, 10.1038/nrmicro1100 Cordwell, 2004, Exploring and exploiting bacterial proteomes, Methods Mol Biol, 266, 115 Szymanski, 2003, Campylobacter—a tale of two protein glycosylation systems, Trends Microbiol, 11, 233, 10.1016/S0966-842X(03)00079-9 Parge, 1995, Structure of the fibre-forming protein pilin at 2.6 A resolution, Nature, 378, 32, 10.1038/378032a0 Stimson, 1995, Meningococcal pilin: a glycoprotein substituted with digalactosyl 2,4-diacetamido-2,4,6-trideoxyhexose, Mol Microbiol, 17, 1201, 10.1111/j.1365-2958.1995.mmi_17061201.x Aas, 2006, Neisseria gonorrhoeae type IV pili undergo multisite, hierarchical modifications with phosphoethanolamine and phosphocholine requiring an enzyme structurally related to lipopolysaccharide phosphoethanolamine transferases, J Biol Chem, 281, 27712, 10.1074/jbc.M604324200 Linton, 2005, Functional analysis of the Campylobacter jejuni N-linked protein glycosylation pathway, Mol Microbiol, 55, 1695, 10.1111/j.1365-2958.2005.04519.x Villarino, 2005, Proteomic identification of M. tuberculosis protein kinase substrates: PknB recruits GarA, a FHA domain-containing protein, through activation loop-mediated interactions, J Mol Biol, 350, 953, 10.1016/j.jmb.2005.05.049 Kim, 2007, Structure and function of an essential component of the outer membrane protein assembly machine, Science, 317, 961, 10.1126/science.1143993 Clantin, 2007, Structure of the membrane protein FhaC: a member of the Omp85-TpsB transporter superfamily, Science, 317, 957, 10.1126/science.1143860 Scherr, 2007, Structural basis for the specific inhibition of protein kinase G, a virulence factor of Mycobacterium tuberculosis, Proc Natl Acad Sci U S A, 104, 12151, 10.1073/pnas.0702842104 Ramsland, 2007, Structural basis for evasion of IgA immunity by Staphylococcus aureus revealed in the complex of SSL7 with Fc of human IgA1, Proc Natl Acad Sci U S A, 104, 15051, 10.1073/pnas.0706028104 Zhang, 2006, Solution structure of monomeric BsaL, the type III secretion needle protein of Burkholderia pseudomallei, J Mol Biol, 359, 322, 10.1016/j.jmb.2006.03.028 Craig, 2006, Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions, Mol Cell, 23, 651, 10.1016/j.molcel.2006.07.004