The bacterial-fungal energy channel concept challenged by enormous functional versatility of soil protists
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Adl, 2014, Amplification primers of SSU rDNA for soil protists, Soil Biol. Biochem., 69, 328, 10.1016/j.soilbio.2013.10.024
Adl, 2012, The revised classification of eukaryotes, J. Eukaryot. Microbiol., 59, 429, 10.1111/j.1550-7408.2012.00644.x
Andersen, 2004, Non-target effects of bacterial biological control agents on soil Protozoa, Biol. Fertil. Soils, 40, 230, 10.1007/s00374-004-0774-y
Bates, 2013, Global biogeography of highly diverse protistan communities in soil, ISME J., 7, 652, 10.1038/ismej.2012.147
Berney, 2015, Expansion of the ‘Reticulosphere’: diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa), Protist, 166, 271, 10.1016/j.protis.2015.04.001
Bjørnlund, 2008, ‘David and Goliath’ of the soil food web – flagellates that kill nematodes, Soil Biol. Biochem., 40, 2032, 10.1016/j.soilbio.2008.04.011
Bongers, 1998, Functional diversity of nematodes, Appl. Soil Ecol., 10, 239, 10.1016/S0929-1393(98)00123-1
Bonkowski, 2004, Protozoa and plant growth: the microbial loop in soil revisited, New Phytol., 162, 617, 10.1111/j.1469-8137.2004.01066.x
Bonkowski, 2002, Do soil protozoa enhance plant growth by hormonal effects?, Soil Biol. Biochem., 34, 1709, 10.1016/S0038-0717(02)00157-8
Burki, 2014, The eukaryotic tree of life from a global phylogenomic perspective, Cold Spring Harb. Perspect. Biol., 6, a016147, 10.1101/cshperspect.a016147
Chakraborty, 1983, Amoebae from a take-all suppressive soil which feed on Gaeumannomyces graminis tritici and other soil fungi, Soil Biol. Biochem., 15, 17, 10.1016/0038-0717(83)90113-X
Clarholm, 1981, Protozoan grazing of bacteria in soil—impact and importance, Microb. Ecol., 7, 343, 10.1007/BF02341429
Clarholm, 1985, Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen, Soil Biol. Biochem., 17, 181, 10.1016/0038-0717(85)90113-0
Coûteaux, 1985, Relationships between testate amoebae and fungi in humus microcosms, Soil Biol. Biochem., 17, 339, 10.1016/0038-0717(85)90071-9
Coûteaux, 1998, Functional diversity amongst soil protozoa, Appl. Soil Ecol., 10, 229, 10.1016/S0929-1393(98)00122-X
Crotty, 2012, Protozoan pulses unveil their pivotal position within the soil food web, Microb. Ecol., 63, 905, 10.1007/s00248-011-9956-y
Curry, 2007, The feeding ecology of earthworms – a review, Pedobiologia, 50, 463, 10.1016/j.pedobi.2006.09.001
de Groot, 2016, Molecular identification of soil eukaryotes and focused approaches targeting protist and faunal groups using high-throughput metabarcoding, 125
de Ruiter, 1995, Energetics, patterns of interaction strengths, and stability in real ecosystems, Science, 269, 1257, 10.1126/science.269.5228.1257
Dupont, 2016, Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs, Environ. Microbiol., 10.1111/1462-2920.13220
Ekelund, 1998, Enumeration and abundance of mycophagous protozoa in soil, with special emphasis on heterotrophic flagellates, Soil Biol. Biochem., 30, 1343, 10.1016/S0038-0717(97)00266-6
Esteban, 2006, Soil protozoa — an intensive study of population dynamics and community structure in an upland grassland, Appl. Soil Ecol., 33, 137, 10.1016/j.apsoil.2005.07.011
Faber, 1991, Functional classification of soil fauna: a new approach, Oikos, 62, 110, 10.2307/3545458
Foissner, 1997, Protozoa as bioindicators in agroecosystems, with emphasis on farming practices, biocides, and biodiversity, Agr. Ecosyst. Environ., 62, 93, 10.1016/S0167-8809(96)01142-5
Geisen, 2016, Thorough high-throughput sequencing analyses unravels huge diversities of soil parasitic protists, Environ. Microbiol., 10.1111/1462-2920.13309
Geisen, 2014, Soil water availability strongly alters the community composition of soil protists, Pedobiologia, 57, 205, 10.1016/j.pedobi.2014.10.001
Geisen, 2014, Acanthamoeba everywhere: high diversity of Acanthamoeba in soils, Parasitol. Res., 113, 3151, 10.1007/s00436-014-3976-8
Geisen, 2016, The soil food web revisited: diverse and widespread mycophagous soil protists, Soil Biol. Biochem., 94, 10, 10.1016/j.soilbio.2015.11.010
Geisen, 2015, Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa, Mol. Ecol., 24, 4556, 10.1111/mec.13238
Geisen, 2015, Pack hunting by a common soil amoeba on nematodes, Environ. Microbiol., 17, 4538, 10.1111/1462-2920.12949
Geisen, 2015, Metatranscriptomic census of active protists in soils, ISME J., 9, 2178, 10.1038/ismej.2015.30
Grossmann, 2016, Protistan community analysis: key findings of a large-scale molecular sampling, ISME J., 10.1038/ismej.2016.10
Haig, 2015, Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters, ISME J., 9, 797, 10.1038/ismej.2014.175
Hunt, 1987, The detrital food web in a shortgrass prairie, Biol. Fert. Soils, 3, 57
Jousset, 2006, Secondary metabolites help biocontrol strain Pseudomonas fluorescens CHA0 to escape protozoan grazing, Appl. Environ. Microbiol., 72, 7083, 10.1128/AEM.00557-06
Koller, 2013, Protozoa stimulate N uptake and growth of arbuscular mycorrhizal plants, Soil Biol. Biochem., 65, 204, 10.1016/j.soilbio.2013.05.020
Moore, 1988, Resource compartmentation and the stability of real ecosystems, Nature, 333, 261, 10.1038/333261a0
Pawlowski, 2013, The new micro-kingdoms of eukaryotes, BMC Biol., 11, 40, 10.1186/1741-7007-11-40
Rudnick, 2015, Baiting of rhizosphere bacteria with hyphae of common soil fungi reveals a diverse group of potentially mycophagous secondary consumers, Soil Biol. Biochem., 88, 73, 10.1016/j.soilbio.2015.04.015
Smirnov, 2004, Guide to the methods of study and identification of soil gymnamoebae, Protistology, 3, 148
St. John, 2006, Does plant species co-occurrence influence soil mite diversity?, Ecology, 87, 625, 10.1890/05-0380
Yeates, 1995, Testate amoebae as predators of nematodes, Biol. Fertil. Soils, 20, 1, 10.1007/BF00307834