Whole genome sequencing and molecular epidemiology of paediatric Staphylococcus aureus bacteraemia
Tài liệu tham khảo
Tong, 2015, Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management, Clin Microbiol Rev, 28, 603, 10.1128/CMR.00134-14
Campbell, 2021, Pediatric Staphylococcus aureus bacteremia: clinical spectrum and predictors of poor outcome, Clin Infect Dis
McNeil, 2020, Acute hematogenous osteomyelitis in children: clinical presentation and management, Infect Drug Resist, 13, 4459, 10.2147/IDR.S257517
McMullan, 2016, Epidemiology and mortality of Staphylococcus aureus bacteremia in Australian and New Zealand children, JAMA Pediatr, 170, 979, 10.1001/jamapediatrics.2016.1477
Frimodt-Moller, 1997, Epidemiology of Staphylococcus aureus bacteremia in Denmark from 1957 to 1990, Clinical Microbiol Infect, 3, 297, 10.1111/j.1469-0691.1997.tb00617.x
Agostino, 2017, The increasing importance of community-acquired methicillin-resistant Staphylococcus aureus infections, Med J Aus, 207, 388, 10.5694/mja17.00089
Laupland, 2013, The changing epidemiology of Staphylococcus aureus bloodstream infection: a multinational population-based surveillance study, Clin Microbiol Infect, 19, 465, 10.1111/j.1469-0691.2012.03903.x
Hultén, 2018, Analysis of invasive community-acquired methicillin-susceptible Staphylococcus aureus infections during a period of declining community acquired methicillin-resistant Staphylococcus aureus infections at a large children's hospital, Pediatr Infect Dis J, 37, 235, 10.1097/INF.0000000000001753
Ritz, 2012, The role of Panton-Valentine leukocidin in Staphylococcus aureus musculoskeletal infections in children, Pediatr Infect Dis J, 31, 514, 10.1097/INF.0b013e31824f18cb
Campbell, 2019, Adjunctive protein synthesis inhibitor antibiotics for toxin suppression in Staphylococcus aureus infections: a systematic appraisal, J Antimicrob Chemother, 74, 1
Shallcross, 2013, The role of the Panton-Valentine leucocidin toxin in staphylococcal disease: a systematic review and meta-analysis, Lancet Infect Dis, 13, 43, 10.1016/S1473-3099(12)70238-4
Slingerland, 2020, Whole-genome sequencing to explore nosocomial transmission and virulence in neonatal methicillin-susceptible Staphylococcus aureus bacteremia, Antimicrob Resist Infect Control, 9, 39, 10.1186/s13756-020-0699-8
Ilczyszyn, 2016, Clonal structure and characterization of Staphylococcus aureus strains from invasive infections in paediatric patients from south Poland: association between age, spa types, clonal complexes, and genetic markers, PloS One, 11, 10.1371/journal.pone.0151937
2018
Bankevich, 2012, SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, 19, 455, 10.1089/cmb.2012.0021
Seemann, 2014, Prokka: rapid prokaryotic genome annotation, Bioinformatics, 30, 2068, 10.1093/bioinformatics/btu153
Page, 2015, Roary: rapid large-scale prokaryote pan genome analysis, Bioinformatics, 31, 3691, 10.1093/bioinformatics/btv421
Kumar, 2018, MEGA X: molecular evolutionary genetics analysis across computing platforms, Mol Biol Evol, 35, 1547, 10.1093/molbev/msy096
Letunic, 2021, Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation, Nucleic Acids Res, 49, W293, 10.1093/nar/gkab301
Enright, 2000, Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus, J Clin Microbiol, 38, 1008, 10.1128/JCM.38.3.1008-1015.2000
Jolley, 2018, Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications, Wellcome Open Res, 3, 124, 10.12688/wellcomeopenres.14826.1
Kaya, 2018, SCCmecFinder, a Web-based tool for typing of Staphylococcal cassette chromosome mec in Staphylococcus aureus using whole-genome sequence data, mSphere, 3, e00612, 10.1128/mSphere.00612-17
Giulieri, 2016, Use of bacterial whole-genome sequencing to understand and improve the management of invasive Staphylococcus aureus infections, Expert Rev Anti Infect Ther, 14, 1023, 10.1080/14787210.2016.1233815
Gordon, 2014, Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing, J Clin Microbiol, 52, 1182, 10.1128/JCM.03117-13
Altschul, 1990, Basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2
Horan, 2008, CDC/NHSN surveillance definition of health care-associated infection and criteria for specific types of infections in the acute care setting, Am J Infect Control, 36, 309, 10.1016/j.ajic.2008.03.002
Hsiang, 2012, Epidemiologic similarities in pediatric community-associated methicillin-resistant and methicillin-sensitive Staphylococcus aureus in the San Francisco Bay Area, J Pediatr Infect Dis Soc, 1, 200, 10.1093/jpids/pis061
Manara, 2018, Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital, Genome Med, 10, 82, 10.1186/s13073-018-0593-7
Rodríguez, 2014, Differences in epidemiological and molecular characteristics of nasal colonization with Staphylococcus aureus (MSSA-MRSA) in children from a university hospital and day care centers, PloS One, 9, 10.1371/journal.pone.0101417
Crandall, 2020, Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children: continued dominance of MSSA over MRSA, PloS One, 15, 10.1371/journal.pone.0238991
Kechrid, 2011, Molecular analysis of community-acquired methicillin-susceptible and resistant Staphylococcus aureus isolates recovered from bacteraemic and osteomyelitis infections in children from Tunisia, Clin Microbiol Infect, 17, 1020, 10.1111/j.1469-0691.2010.03367.x
Sievert, 2013, Antimicrobial-resistant pathogens associated with healthcare-associated infections: summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010, Infect Control Hospital Epidemiol, 34, 1, 10.1086/668770
David, 2011, Methicillin-susceptible Staphylococcus aureus as a predominantly healthcare-associated pathogen: a possible reversal of roles?, PloS One, 6, e18217, 10.1371/journal.pone.0018217
Tong, 2015, Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov, Int J Syst Evol Microbiol, 65, 15, 10.1099/ijs.0.062752-0
Akobi, 2012, Characterization of Staphylococcus aureus isolates from faecal samples of the straw-coloured fruit bat (Eidolon helvum) in Obafemi Awolowo University (OAU), Nigeria, BMC Microbiol, 12, 279, 10.1186/1471-2180-12-279
Ohnishi, 2018, Purulent lymphadenitis caused by Staphylococcus argenteus, representing the first Japanese case of Staphylococcus argenteus (multilocus sequence type 2250) infection in a 12-year-old boy, J Infect Chemother, 24, 925, 10.1016/j.jiac.2018.03.018
Pannaraj, 2006, Infective pyomyositis and myositis in children in the era of community-acquired, methicillin-resistant Staphylococcus aureus infection, Clin Infect Dis, 43, 953, 10.1086/507637
Wehrhahn, 2010, Clinical and laboratory features of invasive community-onset methicillin-resistant Staphylococcus aureus infection: a prospective case-control study, Eur J Clin Microbiol Infect Dis, 29, 1025, 10.1007/s10096-010-0973-4
Tong, 2010, Clinical correlates of Panton-Valentine leukocidin (PVL), PVL isoforms, and clonal complex in the Staphylococcus aureus population of Northern Australia, J Infect Dis, 202, 760, 10.1086/655396
Sharma-Kuinkel, 2012, Presence of genes encoding panton-valentine leukocidin is not the primary determinant of outcome in patients with hospital-acquired pneumonia due to Staphylococcus aureus, J Clin Microbiol, 50, 848, 10.1128/JCM.06219-11