Phylogenetic analysis of community assembly and structure over space and time

Webb, 2002, Phylogenies and community ecology, Annu. Rev. Ecol. Syst., 33, 475, 10.1146/annurev.ecolsys.33.010802.150448 Webb, 2006, Integrating phylogenies into community ecology, Ecology, 87, S1, 10.1890/0012-9658(2006)87[1:IPICE]2.0.CO;2 Pennington, 2006, Insights into the historical construction of species-rich biomes from dated plant phylogenies, neutral ecological theory and phylogenetic community structure, New Phytol., 172, 605, 10.1111/j.1469-8137.2006.01902.x Wiens, 2004, Speciation and ecology revisited: phylogenetic niche conservatism and the origin of species, Evolution Int. J. Org. Evolution, 58, 193, 10.1111/j.0014-3820.2004.tb01586.x Wiens, 2004, Historical biogeography, ecology and species richness, Trends Ecol. Evol., 19, 639, 10.1016/j.tree.2004.09.011 Wiens, 2005, Niche conservatism: integrating evolution, ecology, and conservation biology, Annu. Rev. Ecol. Evol. Syst., 36, 519, 10.1146/annurev.ecolsys.36.102803.095431 Ackerly, 2006, Niche evolution and adaptive radiation: testing the order of trait divergence, Ecology, 87, S50, 10.1890/0012-9658(2006)87[50:NEAART]2.0.CO;2 Cavender-Bares, 2004, Phylogenetic overdispersion in Floridian oak communities, Am. Nat., 163, 823, 10.1086/386375 Lovette, 2006, Simultaneous effects of phylogenetic niche conservatism and competition on avian community structure, Ecology, 87, S14, 10.1890/0012-9658(2006)87[14:SEOPNC]2.0.CO;2 Silvertown, 2001, Phylogeny and the niche structure of meadow plant communities, J. Ecol., 89, 428, 10.1046/j.1365-2745.2001.00553.x Ricklefs, 2006, Evolutionary diversification and the origin of the diversity-environment relationship, Ecology, 87, S3, 10.1890/0012-9658(2006)87[3:EDATOO]2.0.CO;2 Simberloff, 1970, Experimental zoogeography of islands. A two-year record of colonization, Ecology, 51, 934, 10.2307/1933995 Hughes, 2006, Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes, Proc. Natl. Acad. Sci. U. S. A., 103, 10334, 10.1073/pnas.0601928103 Fjeldsa, 2007, Diversification of African greenbuls in space and time: linking ecological and historical processes, J. Ornithol., 148, S359, 10.1007/s10336-007-0179-4 Schneider, 1998, Comparative phylogeography and the history of endemic vertebrates in the Wet Tropics rainforest of Australia, Mol. Ecol., 7, 487, 10.1046/j.1365-294x.1998.00334.x Fukami, 2007, Immigration history controls diversification in experimental adaptive radiation, Nature, 446, 436, 10.1038/nature05629 White, 2006, A comparison of the species-time relationship across ecosystems and taxonomic groups, Oikos, 112, 185, 10.1111/j.0030-1299.2006.14223.x Ricklefs, 2001, Nonequilibrium diversity dynamics of the Lesser Antillean avifauna, Science, 294, 1522, 10.1126/science.1065005 Ricklefs, 2004, History and the species-area relationship in Lesser Antillean avifauna, Am. Nat., 163, 227, 10.1086/381002 Sax, 2002, Species invasions exceed extinctions on islands worldwide: a comparative study of plants and birds, Am. Nat., 160, 766, 10.1086/343877 MacArthur, 1963, An equilibrium theory of insular zoogeography, Evolution, 17, 373, 10.2307/2407089 MacArthur, 1967 Losos, 2000, Analysis of an evolutionary species-area relationship, Nature, 408, 847, 10.1038/35048558 Hobohm, 2000, Plant species diversity and endemism on islands and archipelagos, with special reference to the Macaronesian Islands, Flora, 195, 9, 10.1016/S0367-2530(17)30943-X Roos, 2004, Species diversity and endemism of five major Malesian Islands: diversity-area relationships, J. Biogeogr., 31, 1893, 10.1111/j.1365-2699.2004.01154.x Schmitt, 1996, Disturbance and succession on the Krakatau Islands, Indonesia, 515 Emerson, 2005, Diversification of the forest beetle genus Tarphius on the Canary Islands, and the evolutionary origins of island endemics, Evolution, 59, 586 Triantis, 2008, Evolutionary species-area curves as revealed by single-island endemics: insights for the inter-provincial species-area relationship, Ecography, 31, 401, 10.1111/j.0906-7590.2007.05323.x Carson, 1997, Sexual selection: a driver of genetic change in Hawaiian Drosophila, J. Hered., 88, 343, 10.1093/oxfordjournals.jhered.a023115 Mendelson, 2005, Rapid speciation in an arthropod, Science, 433, 375 Seehausen, 2006, African cichlid fish: a model system in adaptive radiation research, Proc. Biol. Sci., 273, 1987, 10.1098/rspb.2006.3539 Emerson, 2005, Species diversity can drive speciation, Nature, 434, 1015, 10.1038/nature03450 Hubbell, 2001 Lack, 1976 Tilman, 2004, Niche tradeoffs, neutrality, and community structure: a stochastic theory of resource competition, invasion, and community assembly, Proc. Natl. Acad. Sci. U. S. A., 101, 10854, 10.1073/pnas.0403458101 Diamond, 1975, Assembly of species communities, 342 Hickerson, M.J. and Meyer, C. Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach. BMC Evol. Biol. (in press) Johnson, 2007, An emerging synthesis between community ecology and evolutionary biology, Trends Ecol. Evol., 22, 250, 10.1016/j.tree.2007.01.014 Cavender-Bares, 2006, Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale, Ecology, 87, S109, 10.1890/0012-9658(2006)87[109:PSOFPC]2.0.CO;2 Webb, 2000, Exploring the phylogenetic structure of ecological communities: an example for rain forest trees, Am. Nat., 156, 145, 10.1086/303378 Kembel, 2006, The phylogenetic structure of a neotropical forest tree community, Ecology, 87, S86, 10.1890/0012-9658(2006)87[86:TPSOAN]2.0.CO;2 Swenson, 2006, The problem and promise of scale dependency in community phylogenetics, Ecology, 87, 2418, 10.1890/0012-9658(2006)87[2418:TPAPOS]2.0.CO;2 Silvertown, 2006, Phylogeny and the hierarchical organisation of plant diversity, Ecology, 87, S39, 10.1890/0012-9658(2006)87[39:PATHOO]2.0.CO;2 Silvertown, 2006, Absence of phylogenetic signal in the niche structure of meadow plant communities, Proc. Biol. Sci., 273, 39, 10.1098/rspb.2005.3288 Ackerly, 2003, Community assembly, niche conservatism, and adaptive evolution in changing environments, Int. J. Plant Sci., 164, S165, 10.1086/368401 Ackerly, 2004, Adaptation, niche conservatism, and convergence: comparative studies of leaf evolution in the California chaparral, Am. Nat., 163, 654, 10.1086/383062 Chazdon, 2003, Community and phylogenetic structure of reproductive traits of woody species in wet tropical forests, Ecol. Monogr., 73, 331, 10.1890/02-4037 Prinzing, 2001, The niche of higher plants: evidence for phylogenetic conservatism, Proc. Biol. Sci., 268, 2383, 10.1098/rspb.2001.1801 Tofts, 2000, A phylogenetic approach to community assembly from a local species pool, Proc. Biol. Sci., 267, 363, 10.1098/rspb.2000.1010 Felsenstein, 1985, Phylogenies and the comparative method, Am. Nat., 125, 1, 10.1086/284325 Pearman, 2008, Niche dynamics in space and time, Trends Ecol. Evol., 23, 149, 10.1016/j.tree.2007.11.005 Peterson, 1999, Conservation of ecological niches in evolutionary time, Science, 285, 1265, 10.1126/science.285.5431.1265 Losos, 1998, Contingency and determinism in replicated adaptive radiations of island lizards, Science, 279, 2115, 10.1126/science.279.5359.2115 Glor, 2003, Phylogenetic analysis of ecological and morphological diversification in Hispaniolan trunk-ground anoles (Anolis cybotes group), Evolution, 57, 2383, 10.1111/j.0014-3820.2003.tb00250.x Roderick, 2008, Host plant use, diversification, and coevolution: insights from remote oceanic islands, 151 Turner, 2007, Adaptive radiation of cichlid fish, Curr. Biol., 17, R827, 10.1016/j.cub.2007.07.026 Blackledge, 2004, Convergent evolution of behavior in an adaptive radiation of Hawaiian web-building spiders, Proc. Natl. Acad. Sci. U. S. A., 101, 16228, 10.1073/pnas.0407395101 Gillespie, 2004, Community assembly through adaptive radiation in Hawaiian spiders, Science, 303, 356, 10.1126/science.1091875 Baldwin, 1995, Historical biogeography and ecology of the Hawaiian silversword alliance (Asteraceae): new molecular phylogenetic perspectives, 259 Gillespie, R.G. and Baldwin, B.G. Island biogeography of remote archipelagos: interplay between ecological and evolutionary processes. In The Theory of Island Biogeography at 40: Impacts and Prospects (Losos, J.B. and Ricklefs, R.E., eds), Princeton University Press (in press). Wilson, 1969, The species equilibrium, 38 Sargent, 2008, Plant-pollinator interactions and the assembly of plant communities, Trends Ecol. Evol., 23, 123, 10.1016/j.tree.2007.11.003 Silvertown, 2004, Plant coexistence and the niche, Trends Ecol. Evol., 19, 605, 10.1016/j.tree.2004.09.003 Whittaker, 1975 Pickett, 1978, Organization of an assemblage of early successional species on a soil moisture gradient, Ecology, 59, 1248, 10.2307/1938238 Hutchinson, 1957, The multivariate niche, Cold Spring Harb. Symp. Quant. Biol., 22, 415, 10.1101/SQB.1957.022.01.039 Hardy, 2007, Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity, J. Ecol., 95, 493, 10.1111/j.1365-2745.2007.01222.x Chave, 2007, The importance of phylogenetic structure in biodiversity studies, 150 Verdu, 2007, Fire drives phylogenetic clustering in Mediterranean Basin woody plant communities, J. Ecol., 95, 1316, 10.1111/j.1365-2745.2007.01300.x Slingsby, 2006, Phylogenetic relatedness limits co-occurrence at fine spatial scales: evidence from the schoenoid sedges (Cyperaceae: Schoeneae) of the Cape Floristic Region, South Africa, Am. Nat., 168, 14, 10.1086/505158 Valiente-Banuet, 2007, Facilitation can increase the phylogenetic diversity of plant communities, Ecol. Lett., 10, 1029, 10.1111/j.1461-0248.2007.01100.x Prinzing, 2008, Less lineages – more trait variation: phylogenetically clustered plant communities are functionally more diverse, Ecol. Lett., 11, 809, 10.1111/j.1461-0248.2008.01189.x Losos, 2003, Niche lability in the evolution of a Caribbean lizard community, Nature, 424, 542, 10.1038/nature01814 Kozak, 2005, Phylogenetic analysis of ecomorphological divergence, community structure, and diversification rates in dusky salamanders (Plethodontidae: Desmognathus), Evolution, 59, 2000, 10.1111/j.0014-3820.2005.tb01069.x Helmus, 2007, Separating the determinants of phylogenetic community structure, Ecol. Lett., 10, 917, 10.1111/j.1461-0248.2007.01083.x Vamosi, 2007, Body size, rarity, and phylogenetic community structure: insights from diving beetle assemblages of Alberta, Divers. Distrib., 13, 1 Mouillot, 2005, Parasite species coexistence and limiting similarity: a multiscale look at phylogenetic, functional and reproductive distances, Oecologia, 146, 269, 10.1007/s00442-005-0194-1 Cardillo, 2008, Global patterns in the phylogenetic structure of island mammal assemblages, Proc. Biol. Sci., 275, 1549, 10.1098/rspb.2008.0262 Cooper, 2008, A common tendency for phylogenetic overdispersion in mammalian assemblages, Proc. Biol. Sci., 275, 2031, 10.1098/rspb.2008.0420 Horner-Devine, 2006, Phylogenetic clustering and overdispersion in bacterial communities, Ecology, 87, S100, 10.1890/0012-9658(2006)87[100:PCAOIB]2.0.CO;2 Maherali, 2007, Influence of phylogeny on fungal community assembly and ecosystem functioning, Science, 316, 1746, 10.1126/science.1143082 Brower, 1996, Parallel race formation and the evolution of mimicry in Heliconius butterflies: a phylogenetic hypothesis from mitochondrial DNA sequences, Evolution, 50, 195, 10.2307/2410794 Schluter, 2000 Tokeshi, 1999 Brown, 1956, Character displacement, Syst. Zool., 5, 49, 10.2307/2411924 Dayan, 2005, Ecological and community-wide character displacement: the next generation, Ecol. Lett., 8, 875, 10.1111/j.1461-0248.2005.00791.x Leibold, 2006, Coexistence of the niche and neutral perspectives in community ecology, Ecology, 87, 1399, 10.1890/0012-9658(2006)87[1399:COTNAN]2.0.CO;2 Jordal, 2006, Apparent ‘sympatric’ speciation in ecologically similar herbivorous beetles facilitated by multiple colonizations of an island, Mol. Ecol., 15, 2935, 10.1111/j.1365-294X.2006.02993.x Dobzhansky, 1940, Speciation as a stage in evolutionary divergence, Am. Nat., 74, 312, 10.1086/280899 Barr, 1981, Do cave carabid beetles really show character displacement in body size?, Am. Nat., 117, 363, 10.1086/283714 Kawano, 1995, Habitat shift and phenotypic character displacement in sympatry of two closely related rhinocerus beetle species (Coleoptera: Scarabeidae), Ann. Entomol. Soc. Am., 88, 641, 10.1093/aesa/88.5.641 Kawano, 2003, Character displacement in stag beetles (Coleoptera: Lucanidae), Ann. Entomol. Soc. Am., 96, 503, 10.1603/0013-8746(2003)096[0503:CDISBC]2.0.CO;2 Sota, 2000, Interspecific body size differentiation in species assemblages of the carabid subgenus Ohompterus in Japan, Popul. Ecol., 42, 279, 10.1007/PL00012006