Genome duplication and the origin of the vertebrate skeleton
Tài liệu tham khảo
Ohno, 1970
Putnam, 2008, The amphioxus genome and the evolution of the chordate karyotype, Nature, 453, 1064, 10.1038/nature06967
Storchova, 2004, From polyploidy to aneuploidy, genome instability and cancer, Nat Rev Mol Cell Biol, 5, 45, 10.1038/nrm1276
Gallardo, 1999, Discovery of tetraploidy in a mammal, Nature, 401, 341, 10.1038/43815
Furlong, 2002, Were vertebrates octoploid?, Philos Trans R Soc Lond B: Biol Sci, 357, 531, 10.1098/rstb.2001.1035
Gibson, 2000, Evidence in favour of ancient octaploidy in the vertebrate genome, Biochem Soc Trans, 28, 259, 10.1042/bst0280259
Wolfe, 2001, Yesterday's polyploids and the mystery of diploidization, Nat Rev Genet, 2, 333, 10.1038/35072009
Eakin, 2003, Tetraploid development in the mouse, Dev Dyn, 228, 751, 10.1002/dvdy.10363
Otto, 2007, The evolutionary consequences of polyploidy, Cell, 131, 452, 10.1016/j.cell.2007.10.022
Force, 1999, Preservation of duplicate genes by complementary, degenerative mutations, Genetics, 151, 1531, 10.1093/genetics/151.4.1531
Lynch, 2000, The evolutionary fate and consequences of duplicate genes, Science, 290, 1151, 10.1126/science.290.5494.1151
Escriva, 2002, Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution, Mol Biol Evol, 19, 1440, 10.1093/oxfordjournals.molbev.a004207
Panopoulou, 2005, Timing and mechanism of ancient vertebrate genome duplications—the adventure of a hypothesis, Trends Genet, 21, 559, 10.1016/j.tig.2005.08.004
Lynch, 2007
Kleinjan, 2008, Subfunctionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence, PLoS Genet, 4, e29, 10.1371/journal.pgen.0040029
Yan, 2005, A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development, Development, 132, 1069, 10.1242/dev.01674
Mise, 2008, Function of Pax1 and Pax9 in the sclerotome of medaka fish, Genesis, 46, 185, 10.1002/dvg.20381
Horton, 2003, Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution, J Exp Zoolog B: Mol Dev Evol, 299, 41, 10.1002/jez.b.40
Dehal, 2005, Two rounds of whole genome duplication in the ancestral vertebrate, PLoS Biol, 3, e314, 10.1371/journal.pbio.0030314
Hughes, 1999, Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history, J Mol Evol, 48, 565, 10.1007/PL00006499
Hughes, 2001, Ancient genome duplications did not structure the human Hox-bearing chromosomes, Genome Res, 11, 771, 10.1101/gr.GR-1600R
Martin, 1999, Increasing genomic complexity by gene duplication and the origin of vertebrates, Am Nat, 154, 111, 10.1086/303231
Amemiya, 2008, The amphioxus Hox cluster: characterization, comparative genomics, and evolution, J Exp Zoolog B: Mol Dev Evol, 310, 465, 10.1002/jez.b.21213
Venkatesh, 2007, Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome, PLoS Biol, 5, e101, 10.1371/journal.pbio.0050101
Crow, 2006, The “fish-specific” Hox cluster duplication is coincident with the origin of teleosts, Mol Biol Evol, 23, 121, 10.1093/molbev/msj020
Vandepoele, 2004, Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates, Proc Natl Acad Sci U S A, 101, 1638, 10.1073/pnas.0307968100
Horton, 2004, Gene map of the extended human MHC, Nat Rev Genet, 5, 889, 10.1038/nrg1489
Castro, 2004, An antecedent of the MHC-linked genomic region in amphioxus, Immunogenetics, 55, 782, 10.1007/s00251-004-0642-9
Azumi, 2003, Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: “waiting for Godot”, Immunogenetics, 55, 570, 10.1007/s00251-003-0606-5
McLysaght, 2002, Extensive genomic duplication during early chordate evolution, Nat Genet, 31, 200, 10.1038/ng884
Gu, 2002, Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution, Nat Genet, 31, 205, 10.1038/ng902
Bailey, 1997, Phylogenetic reconstruction of vertebrate Hox cluster duplications, Mol Biol Evol, 14, 843, 10.1093/oxfordjournals.molbev.a025825
Abbasi, 2007, An insight into the phylogenetic history of HOX linked gene families in vertebrates, BMC Evol Biol, 7, 239, 10.1186/1471-2148-7-239
Runnegar, 1985, Collagen gene construction and evolution, J Mol Evol, 22, 141, 10.1007/BF02101692
Morvan-Dubois, 2003, Phylogenetic analysis of vertebrate fibrillar collagen locates the position of zebrafish alpha3(I) and suggests an evolutionary link between collagen alpha chains and hox clusters, J Mol Evol, 57, 501, 10.1007/s00239-003-2502-x
Zhang, 2006, Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates, Proc Natl Acad Sci U S A, 103, 16829, 10.1073/pnas.0605630103
Zhang, 2006, Lamprey type II collagen and Sox9 reveal an ancient origin of the vertebrate collagenous skeleton, Proc Natl Acad Sci U S A, 103, 3180, 10.1073/pnas.0508313103
Force, 2002, Hox cluster organization in the jawless vertebrate Petromyzon marinus, J Exp Zool, 294, 30, 10.1002/jez.10091
Irvine, 2002, Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus, J Exp Zool, 294, 47, 10.1002/jez.10090
Stadler, 2004, Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii, Mol Phylogenet Evol, 32, 686, 10.1016/j.ympev.2004.03.015
Fried, 2003, Independent Hox-cluster duplications in lampreys, J Exp Zoolog B: Mol Dev Evol, 299, 18, 10.1002/jez.b.37
Furlong, 2007, A degenerate ParaHox gene cluster in a degenerate vertebrate, Mol Biol Evol, 24, 2681, 10.1093/molbev/msm194
Shimeld, 2000, Vertebrate innovations, Proc Natl Acad Sci U S A, 97, 4449, 10.1073/pnas.97.9.4449
Cole, 2004, Cartilage is a metazoan tissue; integrating data from nonvertebrate sources, Acta Zool (Stockholm), 85, 69, 10.1111/j.0001-7272.2004.00159.x
Stemple, 2005, Structure and function of the notochord: an essential organ for chordate development, Development, 132, 2503, 10.1242/dev.01812
Wada, 2006, Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny, Evol Dev, 8, 370, 10.1111/j.1525-142X.2006.00109.x
Meulemans, 2007, Insights from amphioxus into the evolution of vertebrate cartilage, PLoS ONE, 2, e787, 10.1371/journal.pone.0000787
Rychel, 2007, Development and evolution of chordate cartilage, J Exp Zoolog B: Mol Dev Evol, 308, 325, 10.1002/jez.b.21157