Microbial community evolution and fate of antibiotic resistance genes during sludge treatment in two full-scale anaerobic digestion plants with thermal hydrolysis pretreatment

Barber, 2016, Thermal hydrolysis for sewage treatment: a critical review, Water Res., 104, 53, 10.1016/j.watres.2016.07.069 Baruzzi, 2011, Antimicrobial compounds produced by bacillus spp. and applications in food, Sci. Against Microb. Pathog.: Commun. Curr. Res. Technol. Adv., 2, 1102 Bonin, 2006, The order methanobacteriales Chen, 2016, Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil, Environ. Int., 92–93, 1, 10.1016/j.envint.2016.03.026 Chen, 2018, New insights into the enhanced performance of high solid anaerobic digestion with dewatered sludge by thermal hydrolysis: organic matter degradation and methanogenic pathways, J. Hazard. Mater., 342, 1, 10.1016/j.jhazmat.2017.08.012 Cummings, 1999, Ferribacterium limneticum, gen. nov., sp. nov., an Fe (III)-reducing microorganism isolated from mining-impacted freshwater lake sediments, Arch. Microbiol., 171, 183, 10.1007/s002030050697 Demirel, 2008, The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review, Rev. Environ. Sci. Bio/Technol., 7, 173, 10.1007/s11157-008-9131-1 Etchebehere, 2001, Comamonas nitrativorans sp. nov., a novel denitrifier isolated from a denitrifying reactor treating landfill leachate, Int. J. Syst. Evol. Microbiol., 51, 977, 10.1099/00207713-51-3-977 Garcia, 2006, 208 Grabowski, 2005, Petrimonas sulfuriphila gen. Nov., sp. Nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir, Int. J. Syst. Evol. Microbiol., 55, 1113, 10.1099/ijs.0.63426-0 Hansen, 1998, Anaerobic digestion of swine manure: Inhibition by ammonia, Water Res., 32, 5, 10.1016/S0043-1354(97)00201-7 Hernández, 2011, Quinolone resistance: much more than predicted, Front. Microbiol., 2, 22, 10.3389/fmicb.2011.00022 Hii, 2014, A review of wet air oxidation and thermal hydrolysis technologies in sludge treatment, Bioresour. Technol., 155, 289, 10.1016/j.biortech.2013.12.066 Jabari, 2012, Macellibacteroides fermentans gen. nov., sp. nov., a member of the family porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters, Int. J. Syst. Evol. Microbiol., 62, 2522, 10.1099/ijs.0.032508-0 Jetten, 1992, Methanogenesis from acetate: a comparison of the acetate metabolism in methanothrix soehngenii and methanosarcina spp, FEMS Microbiol. Lett., 88, 181, 10.1111/j.1574-6968.1992.tb04987.x Kendall, 2006, 244 Kroninger, 2017, Growth characteristics of methanomassiliicoccus luminyensis and expression of methyltransferase encoding genes, Archaea, 2017, 2756573, 10.1155/2017/2756573 Kumarasamy, 2010, Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study, Lancet Infect. Dis., 10, 597, 10.1016/S1473-3099(10)70143-2 Li, 2017, Methanogenic population dynamics regulated by bacterial community responses to protein-rich organic wastes in a high solid anaerobic digester, Chem. Eng. J., 317, 444, 10.1016/j.cej.2017.02.098 Li, 2015, Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes, Isme J., 9, 2490, 10.1038/ismej.2015.59 Liu, 1999, Characterization of the anaerobic propionate-degrading syntrophs smithella propionica gen. nov., sp. nov. and syntrophobacter wolinii, Int. J. Syst. Evol. Microbiol., 49, 545, 10.1099/00207713-49-2-545 Liu, 2016, Evolution of microbial community along with increasing solid concentration during high-solids anaerobic digestion of sewage sludge, Bioresour. Technol., 216, 87, 10.1016/j.biortech.2016.05.048 Luo, 2014, Proliferation of multidrug-resistant new delhi metallo-β-lactamase genes in municipal wastewater treatment plants in Northern China, Environ. Sci. Tech. Lett., 1, 26, 10.1021/ez400152e Ma, 2011, Effect of various sludge digestion conditions on sulfonamide, macrolide, and tetracycline resistance genes and class 1 integrons, Environ. Sci. Technol., 45, 7855, 10.1021/es200827t Manaia, 2018, Antibiotic resistance in wastewater treatment plants: tackling the black box, Environ. Int., 115, 312, 10.1016/j.envint.2018.03.044 Morris, 2014, Methyl coenzyme M reductase (mcrA) gene abundance correlates with activity measurements of methanogenic H₂ /CO₂ -enriched anaerobic biomass, Microb. Biotechnol., 7, 77, 10.1111/1751-7915.12094 Ollivier, 2000, 73 Palmer, 2013, Understanding, predicting and manipulating the genotypic evolution of antibiotic resistance, Nature Rev. Genetics, 14, 243, 10.1038/nrg3351 Pei, 2016, Comparison of ozone and thermal hydrolysis combined with anaerobic digestion for municipal and pharmaceutical waste sludge with tetracycline resistance genes, Water Res., 99, 122, 10.1016/j.watres.2016.04.058 Pruden, 2013, Management options for reducing the release of antibiotics and antibiotic resistance genes to the environment, Environ. Health Perspect., 121, 878, 10.1289/ehp.1206446 Raskin, 1996, Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms, Appl. Environ. Microb., 62, 3847, 10.1128/AEM.62.10.3847-3857.1996 Roberts, 1999, Nomenclature for macrolide and macrolide-lincosamide-streptogramin b resistance determinants, Antimicrob. Agents Chemother., 43, 2823, 10.1128/AAC.43.12.2823 Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microb., 75, 7537, 10.1128/AEM.01541-09 Sousa, 2007, Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with methanobacterium formicicum, Int. J. Syst. Evol. Microbiol., 57, 609, 10.1099/ijs.0.64734-0 Strahilevitz, 2009, Plasmid-mediated quinolone resistance: a multifaceted threat, Clin. Microbiol. Rev., 22, 664, 10.1128/CMR.00016-09 Tong, 2016, Fate of antibiotic resistance bacteria and genes during enhanced anaerobic digestion of sewage sludge by microwave pretreatment, Bioresour. Technol., 217, 37, 10.1016/j.biortech.2016.02.130 Tong, 2018, Factors influencing the fate of antibiotic resistance genes during thermochemical pretreatment and anaerobic digestion of pharmaceutical waste sludge, Environ. Pollut., 243, 1403, 10.1016/j.envpol.2018.09.096 Tong, 2019, Microbial community evolution and fate of antibiotic resistance genes along six different full-scale municipal wastewater treatment processes, Bioresour. Technol., 272, 489, 10.1016/j.biortech.2018.10.079 Wei, 2018, Exploring abundance, diversity and variation of a widespread antibiotic resistance gene in wastewater treatment plants, Environ. Int., 117, 186, 10.1016/j.envint.2018.05.009 Wiegel, 2006, 654 Wu, 2013, Denitrification performance and microbial diversity in a packed-bed bioreactor using PCL as carbon source and biofilm carrier, Appl. Microbiol. Biotechnol., 97, 2725, 10.1007/s00253-012-4110-4 Xu, 2018, Cultivation and stable operation of aerobic granular sludge at low temperature by sieving out the batt-like sludge, Chemosphere, 211, 1219, 10.1016/j.chemosphere.2018.08.018 Xue, 2015, Effects of thermal hydrolysis on organic matter solubilization and anaerobic digestion of high solid sludge, Chem. Eng. J., 264, 174, 10.1016/j.cej.2014.11.005 Yang, 2014, Carboxylicivirga gen. Nov. In the family marinilabiliaceae with two novel species, carboxylicivirga mesophila sp. nov. and carboxylicivirga taeanensis sp. nov., and reclassification of cytophaga fermentans as saccharicrinis fermentans gen. nov., comb. nov, Int. J. Syst. Evol. Microbiol., 64, 1351, 10.1099/ijs.0.053462-0 Yi, 2014, Effect of increasing total solids contents on anaerobic digestion of food waste under mesophilic conditions: performance and microbial characteristics analysis, PLoS One, 9, 10.1371/journal.pone.0102548 Yun, 2018, The difference of morphological characteristics and population structure in PAO and DPAO granular sludges, J. Environ. Sci-China, 76, 388, 10.1016/j.jes.2018.06.003 Zhang, 2013, Microbial reduction of Fe(III) in smectite minerals by thermophilic methanogen methanothermobacter thermautotrophicus, Geochim. Cosmochim. Acta, 106, 203, 10.1016/j.gca.2012.12.031 Zhang, 2014, Inhibitory effects of ammonia on methanogen mcrA transcripts in anaerobic digester sludge, FEMS Microbiol. Ecol., 87, 368, 10.1111/1574-6941.12229 Zheng, 2017, High-throughput profiling and analysis of antibiotic resistance genes in east Tiaoxi river, China. Environ. Pollut., 230, 648, 10.1016/j.envpol.2017.07.025 Zhou, 2009, Falsibacillus pallidus to replace the homonym bacillus pallidus zhou et al. 2008, Int. J. Syst. Evol. Microbiol., 59, 3176, 10.1099/ijs.0.014316-0