Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography

Al-Amoudi, 2004, Cryo-electron microscopy of vitreous sections, Embo. J., 23, 3583, 10.1038/sj.emboj.7600366 Al-Amoudi, 2004, Cryo-electron microscopy of vitreous sections of native biological cells and tissues, J. Struct. Biol., 148, 131, 10.1016/j.jsb.2004.03.010 Aloy, 2004, Structure-based assembly of protein complexes in yeast, Science, 303, 2026, 10.1126/science.1092645 Ausmees, 2003, The bacterial cytoskeleton: an intermediate filament-like function in cell shape, Cell, 115, 705, 10.1016/S0092-8674(03)00935-8 Balish, 2003, Localization of Mycoplasma pneumoniae cytadherence-associated protein HMW2 by fusion with green fluorescent protein: implications for attachment organelle structure, Mol. Microbiol., 47, 49, 10.1046/j.1365-2958.2003.03282.x Baseman, 1982, Molecular basis for cytadsorption of Mycoplasma pneumoniae, J. Bacteriol., 151, 1514, 10.1128/jb.151.3.1514-1522.1982 Boatman, 1979, Morphology and ultrastructure of the mycoplasmatales, vol. 1, 63 Bohm, 2000, Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms, Proc. Natl. Acad. Sci. USA, 97, 14245, 10.1073/pnas.230282097 Bredt, 1968, Motility and multiplication of Mycoplasma pneumoniae. A phase contrast study, Pathol. Microbiol. (Basel), 32, 321 Bremer, 1996, Modulation of chemical composition and other parameters of the cell by growth rate, vol. 2, 1527 Carson, J.L., Hu, P.C., Collier, A.M., 1992. Cell structural and functional elements. In: Maniloff, J., McElhaney, R.N., Finch, L.R., Baseman, J.B. (Eds.), Mycoplasmas: Molecular Biology and Pathogenesis. Am. Soc. Microbiol. Washington, DC, pp. 63–72. Cheutin, 2003, Three-dimensional organization of pKi-67: a comparative fluorescence and electron tomography study using FluoroNanogold, J. Histochem. Cytochem., 51, 1411, 10.1177/002215540305101102 Crowther, 1970, Three dimensional reconstructions of spherical viruses by fourier synthesis from electron micrographs, Nature, 226, 421, 10.1038/226421a0 Dandekar, 2000, Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames, Nucleic Acids Res., 28, 3278, 10.1093/nar/28.17.3278 Dierksen, 1992, Towards automatic electron tomography, Ultramicroscopy, 40, 71, 10.1016/0304-3991(92)90235-C Feldner, 1982, Mycoplasma pneumoniae adhesin localized to tip structure by monoclonal antibody, Nature, 298, 765, 10.1038/298765a0 Fisseha, 1999, Identification and complementation of frameshift mutations associated with loss of cytadherence in Mycoplasma pneumoniae, J. Bacteriol., 181, 4404, 10.1128/JB.181.14.4404-4410.1999 Forster, 2005, Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography, Proc. Natl. Acad. Sci. USA, 102, 4729, 10.1073/pnas.0409178102 Frangakis, 2002, Identification of macromolecular complexes in cryoelectron tomograms of phantom cells, Proc. Natl. Acad. Sci. USA, 99, 14153, 10.1073/pnas.172520299 Frangakis, 2004, Computational exploration of structural information from cryo-electron tomograms, Curr. Opin. Struct. Biol., 14, 325, 10.1016/j.sbi.2004.04.003 Frangakis, 2001, Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion, J. Struct. Biol., 135, 239, 10.1006/jsbi.2001.4406 Gabashvili, 2000, Solution structure of the E. coli 70S ribosome at 11.5Å resolution, Cell, 100, 537, 10.1016/S0092-8674(00)80690-X Gaietta, 2002, Multicolor and electron microscopic imaging of connexin trafficking, Science, 296, 503, 10.1126/science.1068793 Glaser, G., Hyman, H.C., Razin, S., 1992. Ribosomes. In: Maniloff, J., McElhaney, R.N., Finch, L.R.,Baseman, J.B. (Eds.), Mycoplasmas: Molecular Biology and Pathogenesis. Am. Soc. Microbiol. Washington, DC, pp. 169–177. Gobel, 1981, Filamentous structures in adherent Mycoplasma pneumoniae cells treated with nonionic detergents, J. Cell Biol., 91, 537, 10.1083/jcb.91.2.537 Grabenbauer, 2005, Correlative microscopy and electron tomography of GFP through photooxidation, Nat. Methods, 2, 857, 10.1038/nmeth806 Grunewald, 2003, Three-dimensional structure of herpes simplex virus from cryo-electron tomography, Science, 302, 1396, 10.1126/science.1090284 Hayflick, 1965, Tissue cultures and mycoplasmas, Tex. Rep. Biol. Med., 23, 285 Hegerl, 1976, Influence of electron noise on three-dimensional image reconstruction, Z. Naturforschung, 31a, 1717, 10.1515/zna-1976-1241 Hegermann, J., 2003. Untersuchungen von Cytoskelett-Komponenten und Motilität bei Mycoplasma pneumoniae. Mathematisch-Naturwissenschaftliche Fakultäten. Georg-August-Universität, Göttingen (Germany). Hegermann, 2002, Cytoskeletal elements in the bacterium Mycoplasma pneumoniae, Naturwissenschaften, 89, 453, 10.1007/s00114-002-0359-2 Henderson, 1995, The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules, n., 28, 171 Hu, 1982, Mycoplasma pneumoniae infection: role of a surface protein in the attachment organelle, Science, 216, 313, 10.1126/science.6801766 Jaffe, 2004, Proteogenomic mapping as a complementary method to perform genome annotation, Proteomics, 4, 59, 10.1002/pmic.200300511 Kammer, 1970, Scanning-beam electron microscopy of Mycoplasma pneumoniae, J. Bacteriol., 104, 499, 10.1128/jb.104.1.499-502.1970 Kenri, 2004, Use of fluorescent-protein tagging to determine the subcellular localization of Mycoplasma pneumoniae proteins encoded by the cytadherence regulatory locus, J. Bacteriol., 186, 6944, 10.1128/JB.186.20.6944-6955.2004 Keseler, 2005, EcoCyc: a comprehensive database resource for Escherichia coli, Nucleic Acids Res., 33, D334, 10.1093/nar/gki108 Kirchhoff, H., 1992. Motility. In Maniloff, J., McElhaney, R.N., Finch, L.R. and Baseman, J.B. (Eds.), Mycoplasmas: Molecular Biology and Pathogenesis. Am. Soc. Microbiol. Washington, DC, pp. 289–306. Koster, 1992, Automated microscopy for electron tomography, Ultramicroscopy, 46, 207, 10.1016/0304-3991(92)90016-D Krause, 2004, Cellular engineering in a minimal microbe: structure and assembly of the terminal organelle of Mycoplasma pneumoniae, Mol. Microbiol., 51, 917, 10.1046/j.1365-2958.2003.03899.x Krause, 1997, Transposon mutagenesis reinforces the correlation between Mycoplasma pneumoniae cytoskeletal protein HMW2 and cytadherence, J. Bacteriol., 179, 2668, 10.1128/jb.179.8.2668-2677.1997 Kurner, 2005, Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum, Science, 307, 436, 10.1126/science.1104031 Layh-Schmitt, 1994, Spatial arrangement of gene products of the P1 operon in the membrane of Mycoplasma pneumoniae, Infect. Immun., 62, 974, 10.1128/iai.62.3.974-979.1994 Layh-Schmitt, 2000, Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae, Microbiology, 146, 741, 10.1099/00221287-146-3-741 Lowe, 2004, Molecules of the bacterial cytoskeleton, Annu. Rev. Biophys. Biomol. Struct., 33, 177, 10.1146/annurev.biophys.33.110502.132647 McBride, 2001, Bacterial gliding motility: multiple mechanisms for cell movement over surfaces, Annu. Rev. Microbiol., 55, 49, 10.1146/annurev.micro.55.1.49 McEwen, 1995, The relevance of dose-fractionation in tomography of radiation-sensitive specimens, Ultramicroscopy, 60, 357, 10.1016/0304-3991(95)00082-8 McIntosh, 2005, New views of cells in 3D: an introduction to electron tomography, Trends Cell Biol., 15, 43, 10.1016/j.tcb.2004.11.009 Medalia, 2002, Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography, Science, 298, 1209, 10.1126/science.1076184 Meng, 1980, Intracellular structures of Mycoplasma pneumoniae revealed after membrane removal, J. Bacteriol., 144, 390, 10.1128/jb.144.1.390-399.1980 Miyata, 2002, Force and velocity of Mycoplasma mobile gliding, J. Bacteriol., 184, 1827, 10.1128/JB.184.7.1827-1831.2002 Miyata, 2002, Movement on the cell surface of the gliding bacterium, Mycoplasma mobile, is limited to its head-like structure, FEMS Microbiol. Lett., 215, 285, 10.1111/j.1574-6968.2002.tb11404.x Nicastro, 2000, Cryo-electron tomography of neurospora mitochondria, J. Struct. Biol., 129, 48, 10.1006/jsbi.1999.4204 Nickell, 2006, A visual approach to proteomics, Nat. Rev. Mol. Cell Biol., 7, 225, 10.1038/nrm1861 Radestock, 1977, Motility of Mycoplasma pneumoniae, J. Bacteriol., 129, 1495, 10.1128/jb.129.3.1495-1501.1977 Rath, 1997, Low-dose automated electron tomography: a recent implementation, J. Struct. Biol., 120, 210, 10.1006/jsbi.1997.3924 Razin, 1998, Molecular biology and pathogenicity of mycoplasmas, Microbiol. Mol. Biol. Rev., 62, 1094, 10.1128/MMBR.62.4.1094-1156.1998 Regula, 2001, Defining the mycoplasma ’cytoskeleton’: the protein composition of the Triton X-100 insoluble fraction of the bacterium Mycoplasma pneumoniae determined by 2-D gel electrophoresis and mass spectrometry, Microbiology, 147, 1045, 10.1099/00221287-147-4-1045 Regula, 2000, Towards a two-dimensional proteome map of Mycoplasma pneumoniae, Electrophoresis, 21, 3765, 10.1002/1522-2683(200011)21:17<3765::AID-ELPS3765>3.0.CO;2-6 Seto, 2005, Involvement of P1 adhesin in gliding motility of Mycoplasma pneumoniae as revealed by the inhibitory effects of antibody under optimized gliding conditions, J. Bacteriol., 187, 1875, 10.1128/JB.187.5.1875-1877.2005 Seto, 2001, Visualization of the attachment organelle and cytadherence proteins of Mycoplasma pneumoniae by immunofluorescence microscopy, J. Bacteriol., 183, 1621, 10.1128/JB.183.5.1621-1630.2001 Seto, 2003, Attachment organelle formation represented by localization of cytadherence proteins and formation of the electron-dense core in wild-type and mutant strains of Mycoplasma pneumoniae, J. Bacteriol., 185, 1082, 10.1128/JB.185.3.1082-1091.2003 Stevens, 1990, Disulfide-linked protein associated with Mycoplasma pneumoniae cytadherence phase variation, Infect. Immun., 58, 3430, 10.1128/iai.58.10.3430-3433.1990 Stevens, 1991, Localization of the Mycoplasma pneumoniae cytadherence-accessory proteins HMW1 and HMW4 in the cytoskeleton like Triton shell, J. Bacteriol., 173, 1041, 10.1128/jb.173.3.1041-1050.1991 Stevens, 1992, Mycoplasma pneumoniae cytadherence phase-variable protein HMW3 is a component of the attachment organelle, J. Bacteriol., 174, 4265, 10.1128/jb.174.13.4265-4274.1992 Uenoyama, 2005, Gliding ghosts of Mycoplasma mobile, Proc. Natl. Acad. Sci. USA, 102, 12754, 10.1073/pnas.0506114102 Waites, 2004, Mycoplasma pneumoniae and its role as a human pathogen, Clin. Microbiol. Rev., 17, 697, 10.1128/CMR.17.4.697-728.2004 Weiner, 2003, Transcription profiles of the bacterium Mycoplasma pneumoniae grown at different temperatures, Nucleic Acids Res., 31, 6306, 10.1093/nar/gkg841 Wilson, 1976, Ultrastructural study of Mycoplasma pneumoniae in organ culture, J. Bacteriol., 125, 332, 10.1128/jb.125.1.332-339.1976 Wolgemuth, 2003, The motility of mollicutes, Biophys. J., 85, 828, 10.1016/S0006-3495(03)74523-8 Zheng, 2004, An improved strategy for automated electron microscopic tomography, J. Struct. Biol., 147, 91, 10.1016/j.jsb.2004.02.005