Complete genome sequence of solvent-tolerant Pseudomonas putida S12 including megaplasmid pTTS12

Blank, 2008, Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase, FEBS J., 275, 5173, 10.1111/j.1742-4658.2008.06648.x Boetzer, 2012, Toward almost closed genomes with GapFiller, Genome Biol., 13, 10.1186/gb-2012-13-6-r56 Boetzer, 2014, SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information, BMC Bioinform., 15, 10.1186/1471-2105-15-211 Chaisson, 2012, Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory, BMC Bioinform., 13, 10.1186/1471-2105-13-238 Hartmans, 1990, Bacterial degradation of styrene involving a novel flavin adenine dinucleotide-dependent styrene monooxygenase, Appl. Environ. Microbiol., 56, 1347, 10.1128/AEM.56.5.1347-1351.1990 Heipieper, 1994, Adaptation of Pseudomonas putida S12 to ethanol and toluene at the level of fatty acid composition of membranes, Appl. Environ. Microbiol., 60, 4440, 10.1128/AEM.60.12.4440-4444.1994 Isken, 1999, Effect of organic solvents on the yield of solvent-tolerant Pseudomonas putida S12, Appl. Environ. Microbiol., 65, 2631, 10.1128/AEM.65.6.2631-2635.1999 Kieboom, 1998, Identification and molecular characterization of an efflux pump involved in Pseudomonas putida S12 solvent tolerance, J. Biol. Chem., 273, 85, 10.1074/jbc.273.1.85 Meijnen, 2011, Sustainable production of fine chemicals by the solvent-tolerant Pseudomonas putida S12 using lignocellulosic feedstock, Int. Sugar J., 113, 24 Molina, 2011, The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment, Environ. Microbiol., 13, 2315, 10.1111/j.1462-2920.2011.02492.x Ruijssenaars, 2007, Testosterone 15 beta-hydroxylation by solvent tolerant Pseudomonas putida S12, J. Biotechnol., 131, 205, 10.1016/j.jbiotec.2007.06.007 Sun, 2009, A novel insertion sequence derepresses efflux pump expression and preadapts Pseudomonas putida S12 for extreme solvent stress, J. Bacteriol., 191, 6773, 10.1128/JB.00832-09 Tao, 2012, Genome sequence of Pseudomonas putida S12, a potential platform strain for industrial production of valuable chemicals, J. Bacteriol., 194, 5985, 10.1128/JB.01482-12 Tatusova, 2013 Verhoef, 2010, Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement, Appl. Environ. Microbiol., 87, 679 Verhoef, 2007, Bioproduction of p-hydroxybenzoate from renewable feedstock by solvent-tolerant Pseudomonas putida S12, J. Biotechnol., 132, 49, 10.1016/j.jbiotec.2007.08.031 Verhoef, 2009, Bioproduction of p-hydroxystyrene from glucose by the solvent-tolerant bacterium Pseudomonas putida S12 in a two-phase water–decanol fermentation, Appl. Environ. Microbiol., 75, 931, 10.1128/AEM.02186-08 Volkers, 2006, Chemostat-based proteomic analysis of toluene-affected Pseudomonas putida S12, Environ. Microbiol., 8, 1674, 10.1111/j.1462-2920.2006.01056.x Volkers, 2010, Isolation and genetic characterization of an improved benzene-tolerant mutant of Pseudomonas putida S12, Environ. Microbiol. Rep., 2, 456, 10.1111/j.1758-2229.2010.00172.x Weber, 1993, Adaptation of Pseudomonas putida S12 to high concentrations of styrene and other organic solvents, Appl. Environ. Microbiol., 59, 3502, 10.1128/AEM.59.10.3502-3504.1993 Wery, 2000, A genetically modified solvent-tolerant bacterium for optimized production of a toxic fine chemical, Appl. Microbiol. Biotechnol., 54, 180, 10.1007/s002530000381 Wery, 2001, An insertion sequence prepares Pseudomonas putida S12 for severe solvent stress, J. Biol. Chem., 276 Wierckx, 2009, Metabolic flux analysis of a phenol producing mutant of Pseudomonas putida S12: verification and complementation of hypotheses derived from transcriptomics, J. Biotechnol., 143, 124, 10.1016/j.jbiotec.2009.06.023 Wierckx, 2008, Transcriptome analysis of a phenol-producing Pseudomonas putida S12 construct: genetic and physiological basis for improved production, J. Bacteriol., 190, 2822, 10.1128/JB.01379-07 Wierckx, 2005, Engineering of solvent-tolerant Pseudomonas putida S12 for bioproduction of phenol from glucose, Appl. Environ. Microbiol., 71, 8221, 10.1128/AEM.71.12.8221-8227.2005 Wijte, 2011, Probing the proteome response to toluene exposure in the solvent tolerant Pseudomonas putida S12, J. Proteome Res., 10, 394, 10.1021/pr100401n