Metabolic Engineering of Pseudomonas putida for Methylmalonyl-CoA Biosynthesis to Enable Complex Heterologous Secondary Metabolite Formation
Tài liệu tham khảo
Demain, 1999, Pharmaceutically active secondary metabolites of microorganisms, Appl. Microbiol. Biotechnol., 52, 455, 10.1007/s002530051546
Gräfe, 1999, Secondary metabolites: from past to present, 117
Mootz, 2002, Ways of assembling complex natural products on modular nonribosomal peptide synthetases, ChemBioChem, 3, 490, 10.1002/1439-7633(20020603)3:6<490::AID-CBIC490>3.0.CO;2-N
Grabley, 1999, The impact of natural products on drug discovery, 3
Bode, 2005, The impact of bacterial genomics on natural product research, Angew. Chem. Int. Ed. Engl., 44, 6828, 10.1002/anie.200501080
Bentley, 2002, Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2), Nature, 417, 141, 10.1038/417141a
Ikeda, 2003, Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis, Nat. Biotechnol., 21, 526, 10.1038/nbt820
Peláez, 2006, The historical delivery of antibiotics from microbial natural products: can history repeat?, Biochem Pharmacol, 71, 981, 10.1016/j.bcp.2005.10.010
Wenzel, 2005, Recent developments towards the heterologous expression of complex bacterial natural product biosynthetic pathways, Curr. Opin. Biotechnol., 16, 594, 10.1016/j.copbio.2005.10.001
Pfeifer, 2001, Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli, Science, 291, 1790, 10.1126/science.1058092
Wenzel, 2005, Heterologous expression of a myxobacterial natural products assembly line in pseudomonads via red/ET recombineering, Chem. Biol., 12, 349, 10.1016/j.chembiol.2004.12.012
Gross, 2005, Posttranslational modification of myxobacterial carrier protein domains in Pseudomonas sp. by an intrinsic phosphopantetheinyl transferase, Appl. Microbiol. Biotechnol., 68, 66, 10.1007/s00253-004-1836-7
Nelson, 2001
Eggerer, 1960, On the mechanism of the cobamide coenzyme dependent isomerization of methylmalonyl-CoA to succinyl-CoA, J. Am. Chem. Soc., 82, 2643, 10.1021/ja01495a064
Bannerjee, 1970, Properties of purified methylmalonate semialdehyde dehydrogenase of Pseudomonas aeruginosa, J. Biol. Chem., 245, 1828, 10.1016/S0021-9258(19)77166-X
Gerth, 2003, Myxobacteria: Proficient producers of novel natural products with various biological activities: past and future biotechnological aspects with the focus on the genus Sorangium, J. Biotechnol., 106, 233, 10.1016/j.jbiotec.2003.07.015
Reichenbach, 1993, Biologically active secondary metabolites from myxobacteria, Biotechnol. Adv., 11, 219, 10.1016/0734-9750(93)90042-L
Bode, 2006, Analysis of myxobacterial secondary metabolism goes molecular, J. Ind. Microbiol. Biotechnol., 33, 577, 10.1007/s10295-006-0082-7
Gerth, 2000, Studies on the biosynthesis of epothilones: the biosynthetic origin of the carbon skeleton, J. Antibiot. (Tokyo), 53, 1373, 10.7164/antibiotics.53.1373
Molnar, 2000, The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90, Chem. Biol., 7, 97, 10.1016/S1074-5521(00)00075-2
Tang, 2000, Cloning and heterologous expression of the epothilone gene cluster, Science, 287, 640, 10.1126/science.287.5453.640
Ligon, 2002, Characterization of the biosynthetic gene cluster for the antifungal polyketide soraphen A from Sorangium cellulosum So ce26, Gene, 285, 257, 10.1016/S0378-1119(02)00396-7
Schupp, 1995, A Sorangium cellulosum (myxobacterium) gene cluster for the biosynthesis of the macrolide antibiotic soraphen A: cloning, characterization, and homology to polyketide synthase genes from actinomycetes, J. Bacteriol., 177, 3673, 10.1128/jb.177.13.3673-3679.1995
Silakowski, 1999, New lessons for combinatorial biosynthesis from myxobacteria: the myxothiazol biosynthetic gene cluster of Stigmatella aurantiaca DW4/3–1, J. Biol. Chem., 274, 37391, 10.1074/jbc.274.52.37391
Trowitzsch-Kienast, 1986, Antibiotika aus gleitenden Bakterien, XXVIII: Biosynthese des Myxothiazols in Myxococcus fulvus Mx f16, Liebigs Ann. Chem., 10, 93, 10.1002/jlac.198619860109
Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2
Bobik, 2001, Identification of the human methylmalonyl-CoA racemase gene based on the analysis of prokaryotic gene arrangements: implications for decoding the human genome, J. Biol. Chem., 276, 37194, 10.1074/jbc.M107232200
Marsh, 1989, Cloning and structural characterization of the genes coding for adenosylcobalamin-dependent methylmalonyl-CoA mutase from Propionibacterium shermanii, Biochem. J., 260, 345, 10.1042/bj2600345
Birch, 1993, Cloning, sequencing, and expression of the gene encoding methylmalonyl-coenzyme A mutase from Streptomyces cinnamonensis, J. Bacteriol., 175, 3511, 10.1128/jb.175.11.3511-3519.1993
Haller, 2000, Discovering new enzymes and metabolic pathways: conversion of succinate to propionate by Escherichia coli, Biochemistry, 39, 4622, 10.1021/bi992888d
Jansen, 1989, Cloning of full-length methylmalonyl-CoA mutase from a cDNA library using the polymerase chain reaction, Genomics, 4, 198, 10.1016/0888-7543(89)90300-5
Wilkemeyer, 1990, Primary structure and activity of mouse methylmalonyl-CoA mutase, Biochem. J., 271, 449, 10.1042/bj2710449
Muyrers, 2000, ET-cloning: think recombination first, Genet. Eng. (N. Y.), 22, 77, 10.1007/978-1-4615-4199-8_6
Zhang, 2000, DNA cloning by homologous recombination in Escherichia coli, Nat. Biotechnol., 18, 1314, 10.1038/82449
Yuan, 2006, Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotinoid production in E. coli, Metab. Eng., 8, 79, 10.1016/j.ymben.2005.08.005
Murli, 2003, Metabolic engineering of Escherichia coli for improved 6-deoxyerythronolide B production, J. Ind. Microbiol. Biotechnol., 30, 500, 10.1007/s10295-003-0073-x
Salanitro, 1975, Quantitative method for the gas chromatographic analysis of short-chain monocarboxylic and dicarboxylic acids in fermentation media, Appl. Microbiol., 29, 374, 10.1128/AEM.29.3.374-381.1975
Perlova, 2006, Reconstitution of myxothiazol biosynthetic gene luster by Red/ET recombination and heterologous expression in Myxococcus xanthus, AEM, 10.1128/AEM.01503-06
Silakowski, 1999, New lessons for combinatorial biosynthesis from myxobacteria: the myxothiazol biosynthetic gene cluster of Stigmatella aurantiaca DW4/3–1, J. Biol. Chem., 274, 37391, 10.1074/jbc.274.52.37391
Daniel, 2004, The soil metagenome: a rich resource for the discovery of novel natural products, Curr. Opin. Biotechnol., 15, 199, 10.1016/j.copbio.2004.04.005
Martinez, 2004, Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts, Appl. Environ. Microbiol., 70, 2452, 10.1128/AEM.70.4.2452-2463.2004
Peric-Concha, 2003, Mining the microbial metabolome: a new frontier for natural product lead discovery, Drug Discov. Today, 8, 1078, 10.1016/S1359-6446(03)02901-5
Dayem, 2002, Metabolic engineering of a methylmalonyl-CoA mutase-epimerase pathway for complex polyketide biosynthesis in Escherichia coli, Biochemistry, 41, 5193, 10.1021/bi015593k
Finking, 2002, Characterization of a new type of phosphopantetheinyl transferase for fatty acid and siderophore synthesis in Pseudomonas aeruginosa, J. Biol. Chem., 277, 50293, 10.1074/jbc.M205042200
Lambalot, 1996, A new enzyme superfamily: the phosphopantetheinyl transferases, Chem. Biol., 3, 923, 10.1016/S1074-5521(96)90181-7
Armstrong, 2000, Mechanistic diversity in a metalloenzyme superfamily, Biochemistry, 39, 13625, 10.1021/bi001814v
Babbitt, 1997, Understanding enzyme superfamilies: chemistry as the fundamental determinant in the evolution of new catalytic activities, J. Biol. Chem., 272, 30591, 10.1074/jbc.272.49.30591
Korotkova, 2004, MeaB is a component of the methylmalonyl-CoA mutase complex required for protection of the enzyme from inactivation, J. Biol. Chem., 279, 13652, 10.1074/jbc.M312852200
Mori, 1997, Characterization, sequencing, and expression of the genes encoding a reactivating factor for glycerol-inactivated adenosylcobalamin-dependent diol dehydratase, J. Biol. Chem., 272, 32034, 10.1074/jbc.272.51.32034
Seifert, 2001, Identification and expression of the genes and purification and characterization of the gene products involved in reactivation of coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii, Eur. J. Biochem., 268, 2369, 10.1046/j.1432-1327.2001.02123.x
Marsh, 1989, Subunit interactions in Propionibacterium shermanii methylmalonyl-CoA mutase studied by analytical ultracentrifugation, Biochem. J., 260, 353, 10.1042/bj2600353
Staunton, 2001, Polyketide biosynthesis: a millennium review, Nat. Prod. Rep., 18, 380, 10.1039/a909079g
Textor, 1997, Propionate oxidation in Escherichia coli: evidence for operation of a methylcitrate cycle in bacteria, Arch. Microbiol., 168, 428, 10.1007/s002030050518
Mutka, 2006, Heterologous production of epothilone C and D in Escherichia coli, Biochemistry, 45, 1321, 10.1021/bi052075r
Aldor, 2002, Metabolic engineering of a novel propionate-independent pathway for the production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in recombinant Salmonella enterica serovar typhimurium, Appl. Environ. Microbiol., 68, 3848, 10.1128/AEM.68.8.3848-3854.2002
Sambrook, 2001
Bagdasarian, 1981, Specific-purpose plasmid cloning vectors: II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas, Gene, 16, 237, 10.1016/0378-1119(81)90080-9
Miller, 1972
Pradella, 2002, Characterisation, genome size and genetic manipulation of the myxobacterium Sorangium cellulosum So ce56, Arch. Microbiol., 178, 484, 10.1007/s00203-002-0479-2
Meyer, 1978, The fluorescent pigment of Pseudomonas fluorescens: biosynthesis, purification and physiochemical properties, J. Gen. Microbiol., 107, 319, 10.1099/00221287-107-2-319
Zhang, 1998, A new logic for DNA engineering using recombination in Escherichia coli, Nat. Genet., 20, 123, 10.1038/2417
Chang, 1978, Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid, J. Bacteriol., 134, 1141, 10.1128/JB.134.3.1141-1156.1978
Blomfield, 1991, Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon, Mol. Microbiol., 5, 1447, 10.1111/j.1365-2958.1991.tb00791.x
Wang, 2006, An improved recombineering approach by adding RecA to lambda Red recombination, Mol. Biotechnol., 32, 43, 10.1385/MB:32:1:043
Hill, 1994, Cloning of genes involved in the synthesis of pyrrolnitrin from Pseudomonas fluorescens and role of pyrrolnitrin synthesis in biological control of plant disease, Appl. Environ. Microbiol., 60, 78, 10.1128/AEM.60.1.78-85.1994