Complete sequence of the genome of avian paramyxovirus type 2 (strain Yucaipa) and comparison with other paramyxoviruses

Virus Research - Tập 137 - Trang 40-48 - 2008
Madhuri Subbiah1, Sa Xiao1, Peter L. Collins2, Siba K. Samal1
1Virginia-Maryland Regional College of Veterinary Medicine, University of Maryland, College Park, MD 20742, USA
2Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, Bethesda, USA

Tài liệu tham khảo

Alexander, 1980, Avian paramyxoviruses, Vet. Bull., 50, 737 Alexander, 1982, Identification of paramyxoviruses isolated from birds dying in quarantine in Great Britain, Vet. Rec., 111, 571 Alexander, 1986, The classification, host range and distribution of avian paramyxoviruses, 52 Alexander, 2003, Avian paramyxoviruses 2–9, 88 Asahara, 1973, Isolation in Japan of a virus similar to myxovirus Yucaipa (MVY), Bull. Azabu Vet. Coll., 26, 67 Bankowski, 1960, Isolation of an unidentified agent from the respiratory tract of chickens, Science, 132, 292, 10.1126/science.132.3422.292 Bankowski, 1968, Avian Influenza A and paramyxoviruses complicating respiratory diagnosis in poultry, Avian Dis., 12, 259, 10.2307/1588226 Bankowski, 1981, Effect of paramyxovirus Yucaipa on fertility, hatchability, and poult yield of turkeys, Avian Dis., 25, 517, 10.2307/1589944 Calain, 1993, The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA, J. Virol., 67, 4822, 10.1128/JVI.67.8.4822-4830.1993 Chang, 2001, Complete nucleotide sequence of avian paramyxovirus type 6 isolated from ducks, J. Gen. Virol., 82, 2157, 10.1099/0022-1317-82-9-2157 Coelingh, 1990, Naturally occurring Human Parainfluenza Type 3 viruses exhibit divergence in amino acid sequence of their fusion protein neutralization epitopes and cleavage sites, J. Virol., 64, 1329, 10.1128/JVI.64.3.1329-1334.1990 Collings, 1975, Preliminary characterization of a paramyxovirus isolated from a parrot, Res. Vet. Sci., 19, 219, 10.1016/S0034-5288(18)33539-2 Collins, 1993, Deduced amino acid sequences at the fusion protein cleavage site of Newcastle disease viruses showing variation in antigenicity and pathogenicity, Arch. Virol., 128, 363, 10.1007/BF01309446 Collins, 1986, Nucleotide sequences for the gene junctions of human respiratory syncytial virus reveal distinctive features of intergenic structure and gene order, Proc. Natl. Acad. Sci. U.S.A., 83, 4594, 10.1073/pnas.83.13.4594 Crowley, 1988, Sequence variability and function of measles virus 3′ and 5′ ends and intercistronic regions, Virology, 164, 498, 10.1016/0042-6822(88)90564-8 de Leeuw, 1999, Complete nucleotide sequence of Newcastle disease virus: evidence for the existence of a new genus within the subfamily Paramyxovirinae, J. Gen. Virol., 80, 131, 10.1099/0022-1317-80-1-131 Fleury, 1979, Isolation of twenty-three Yucaipa-like viruses from 616 wild birds in Senegal, West Africa, Avian Dis., 23, 742, 10.2307/1589750 Goodman, 1988, Isolation of avian paramyxovirus-2 from domestic and wild birds in Costa Rica, Avian Dis., 32, 713, 10.2307/1590989 Kawano, 1991, Characterization of the human parainfluenza type 2 virus gene encoding the L protein and the intergenic sequences, Nucleic Acids Res., 19, 2739, 10.1093/nar/19.10.2739 Kolakofsky, 1998, Paramyxovirus RNA synthesis and the requirement for hexamer genome length: the rule of six revisited, J. Virol., 72, 891, 10.1128/JVI.72.2.891-899.1998 Krishnamurthy, 1998, Nucleotide sequences of the trailer, nucleocapsid protein gene and intergenic regions of Newcastle disease virus strain Beaudette C and completion of the entire genome sequence, J. Gen. Virol., 79, 2419, 10.1099/0022-1317-79-10-2419 Kusagawa, 1993, Antigenic and molecular properties of Murayama virus isolated from cynomolgus monkeys: the virus is closely related to avian paramyxovirus type 2, Virology, 194, 828, 10.1006/viro.1993.1325 Lamb, 2000, Family Paramyxoviridae, 549 Lamb, 2007, Paramyxoviridae: the viruses and their replication, 1449 Lamb, R.A., Collins, P.L., Kolakofsky, D., Melero, J.A., Nagai, Y., Oldstone, M.B.A., Pringle, C.R., Rima, B.K., 2005. Family Paramyxoviridae. In: Fauquet, C.M. (Ed.), Virus Taxonomy: The Classification and Nomenclature of Viruses. The Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier Acedemic Press, pp. 655–668. Lang, 1975, Occurrence of paramyxovirus Yucaipa in Canadian poultry, Can. Vet. J., 16, 233 Langedijk, 1997, Sequence and structure alignment of Paramyxoviridae attachment proteins and discovery of enzymatic activity for a morbillivirus hemagglutinin, J. Virol., 71, 6155, 10.1128/JVI.71.8.6155-6167.1997 Li, 2005, Improved rapid amplification of cDNA ends (RACE) for mapping both the 5′ and 3′ terminal sequences of paramyxovirus genomes, J. Virol. Methods, 130, 154, 10.1016/j.jviromet.2005.06.022 Lipkind, 1979, The isolation of Yucaipa-like paramyxoviruses from epizootics of a respiratory disease in turkey poultry farms in Israel, Vet. Rec., 105, 577 Lipkind, 1982, Isolation of Yucaipa-like avian paramyxovirus from a wild mallard duck (Anas platyrhinchos) wintering in Israel, Vet. Rec., 110, 15, 10.1136/vr.110.1.15 Lipkind, 1986, Antigenic relationships between avian paramyxoviruses. I. Quantitative characteristics based on hemagglutination and neuraminidase inhibition tests, Arch. Virol., 89, 89, 10.1007/BF01309882 Mbugua, 1985, Isolation of avian paramyxoviruses (Yucaipa-like) from wild birds in Kenya, 1980–1982, J. Wildl. Dis., 21, 52, 10.7589/0090-3558-21.1.52 Miller, 2003, Full-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia, Virology, 317, 330, 10.1016/j.virol.2003.08.013 Mirza, 1994, Site-directed mutagenesis of a conserved hexapeptide in the paramyxovirus hemagglutininneuraminidase glycoprotein: effects on antigenic structure and function, J. Virol., 68, 5093, 10.1128/JVI.68.8.5093-5099.1994 Moll, 2004, Ubiquitous activation of the Nipah virus fusion protein does not require a basic amino acid at the cleavage site, J. Virol., 78, 9705, 10.1128/JVI.78.18.9705-9712.2004 Morgan, 1991, Evolutionary relationships of paramyxovirus nucleocapsid-associated proteins, 163 Myers, 1997, A highly conserved region of the Sendai virus nucleocapsid protein contributes to the NP-NP binding domain, Virology, 229, 322, 10.1006/viro.1996.8429 Nishikawa, 1977, A new paramyxovirus isolated from cynomolgus monkeys, Jpn. J. Med. Sci Biol., 30, 191, 10.7883/yoken1952.30.191 Notredame, 2000, T-Coffee: a novel method for multiple sequence alignments, J. Mol. Biol., 302, 205, 10.1006/jmbi.2000.4042 Nymadawa, 1977, Isolation of paramyxoviruses from free-flying birds of the order Passeriformes in German Democratic Republic, Acta Virol., 56, 345 Ozdemir, 1990, Monoclonal antibodies to avian paramyxovirus type 2, Avian Pathol, 19, 395, 10.1080/03079459008418689 Okada, 1998, Determinants of pantropism of the F1-R mutant of Sendai virus: specific mutations involved are in the F and M genes, Arch. Virol., 143, 2343, 10.1007/s007050050465 Poch, 1990, Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains, J. Gen. Virol., 71, 1153, 10.1099/0022-1317-71-5-1153 Samal, 1996, RNA replication by a respiratory syncytial virus RNA analog does not obey the rule of six and retains a nonviral trinucleotide extension at the leader end, J. Virol., 70, 5075, 10.1128/JVI.70.8.5075-5082.1996 Schnell, 1995, Polymerase activity of in vitro mutated rabies L protein, Virology, 214, 522, 10.1006/viro.1995.0063 Senne, 1983, Virus isolations from pet birds submitted for importation into the United States, Avian Dis., 27, 731, 10.2307/1590316 Shihmanter, 1997, Mixed paramyxovirus infection of wild and domestic birds in Israel, Vet. Microbiol., 58, 73, 10.1016/S0378-1135(97)00147-8 Steward, 1993, RNA editing in Newcastle disease virus, J. Gen. Virol., 74, 2539, 10.1099/0022-1317-74-12-2539 Troutt, 1992, Ligation-anchored PCR: a simple amplification technique with single-sided specificity, Proc. Natl. Acad. Sci. U.S.A., 89, 9823, 10.1073/pnas.89.20.9823 Wang, 2001, Emerging paramyxoviruses, Infect. Dis. Rev., 3, 52 Wang, 2003, Genome diversity of emerging paramyxoviruses, Curr. Genomics, 4, 263, 10.2174/1389202033490385 Wang, 2007, Full-length genome sequence and genetic relationship of two paramyxoviruses isolated from bat and pigs in the Americas, Arch. Virol., 152, 1259, 10.1007/s00705-007-0959-4 Weisman, 1984, Isolation of paramyxoviruses from pigeons in Israel, Vet. Rec., 115, 605, 10.1136/vr.115.23.605-a Zhang, 2006, Isolation, identification and comparison of four isolates of avian paramyxovirus serotype 2 in China, Avian Dis., 50, 386, 10.1637/7502-010906R1.1 Zhang, 2007, Serological survey on prevalence of antibodies to avian paramyxovirus serotype 2 in China, Avian Dis., 51, 137, 10.1637/0005-2086(2007)051[0137:SSOPOA]2.0.CO;2