Plant pararetroviruses: replication and expression

Current Opinion in Virology - Tập 3 - Trang 621-628 - 2013
Thomas Hohn1, Helen Rothnie2
1Basel University, Botanical Institute, Basel, Switzerland
2Manuscript services, Uooer Braemor, Downies Lane, Stromness, Orkney, UK

Tài liệu tham khảo

Pfeiffer, 1983, Involvement of reverse transcription in the replication of cauliflower mosaic virus: a detailed model and test of some aspects, Cell, 33, 781, 10.1016/0092-8674(83)90020-X Ménissier, 1983, Electron microscopic studies of the different topological forms of the cauliflower mosaic virus DNA: knotted encapsidated DNA and nuclear minichromosome, EMBO J, 2, 1067, 10.1002/j.1460-2075.1983.tb01547.x Toh, 1983, Sequence homology between retroviral reverse transcriptase and putative polymerases of hepatitis B virus and cauliflower mosaic virus, Nature, 305, 827, 10.1038/305827a0 Geering, 2010, The classification and nomenclature of endogenous viruses of the family Caulimoviridae, Arch Virol, 55, 123, 10.1007/s00705-009-0488-4 Mollov, 2013, Complete nucleotide sequence of rose yellow vein virus, a member of the family Caulimoviridae having a novel genome organization, Arch Virol, 158, 877, 10.1007/s00705-012-1547-9 Bonneville, 1989, Posttranscriptional transactivation in cauliflower mosaic virus, Cell, 59, 1135, 10.1016/0092-8674(89)90769-1 Park, 2001, A plant viral “Reinitiation” factor interacts with the host transcriptional machinery, Cell, 106, 723, 10.1016/S0092-8674(01)00487-1 Fütterer, 1997, Rice tungro bacilliform virus open reading frames II and III are translated from polycistronic pregenomic RNA by leaky scanning, J Virol, 71, 7984, 10.1128/JVI.71.10.7984-7989.1997 Fütterer, 1994, Splicing in a plant pararetrovirus, Virology, 198, 663, 10.1006/viro.1994.1078 Torruella, 1989, Cauliflower mosaic virus produces an aspartic proteinase to cleave its polyproteins, EMBO J, 8, 2819, 10.1002/j.1460-2075.1989.tb08428.x Harper, 2003, Detection of petunia vein-clearing virus: model for the detection of DNA viruses in plants with homologous endogenous pararetrovirus sequences, J Virol Methods, 107, 177, 10.1016/S0166-0934(02)00231-8 Covey, 1981, Transcription of cauliflower mosaic virus DNA, Detection of transcripts, properties, and location of the gene encoding the virus inclusion body protein, Virology, 111, 463, 10.1016/0042-6822(81)90349-4 Benfey, 1990, The cauliflower mosaic virus 35S promoter: combinatorial regulation of transcription in plants, Science, 250, 959, 10.1126/science.250.4983.959 Pauli, 2004, The cauliflower mosaic virus 35S promoter extends into the transcribed region, J Virol, 78, 12120, 10.1128/JVI.78.22.12120-12128.2004 Ranjan, 2011, Efficient chimeric promoters derived from full-length and sub-genomic transcript promoters of Figwort mosaic virus (FMV), J Biotechnol, 152, 58, 10.1016/j.jbiotec.2011.01.015 Stavolone, 2003, Cestrum yellow leaf curling virus (CmYLCV) promoter:a new strong constitutive promoter for heterologous gene expression in a wide variety of crops, Plant Mol Biol, 53, 663, 10.1023/B:PLAN.0000019110.95420.bb Maiti, 1998, Isolation and expression analysis of peanut chlorotic streak caulimovirus (PClSV) full-length transcript (FLt) promoter in transgenic plants, Biochem Biophys Res Commun, 244, 440, 10.1006/bbrc.1998.8287 Klöti, 1999, Upstream and downstream sequence elements determine the specificity of the rice tungro bacilliform virus promoter and influence RNA production after transcription initiation, Plant Mol Biol, 40, 249, 10.1023/A:1006119517262 Sanfaçon, 1990, Proximity to the promoter inhibits recognition of cauliflower mosaic virus polyadenylation signal, Nature, 346, 81, 10.1038/346081a0 Rothnie, 2001, Polyadenylation in rice tungro bacilliform virus: cis-acting signals and regulation, J Virol, 75, 4184, 10.1128/JVI.75.9.4184-4194.2001 Kiss-László, 1995, Splicing of cauliflower mosaic virus 35S RNA is essential for viral infectivity, EMBO J, 14, 3552, 10.1002/j.1460-2075.1995.tb07361.x Froissart, 2004, Splicing of cauliflower mosaic virus 35S RNA serves to downregulate a toxic gene product, J Gen Virol, 85, 2719, 10.1099/vir.0.80029-0 Fütterer, 1988, The leading sequence of caulimovirus large RNA can be folded into a large stem-loop structure, Nucleic Acids Res, 16, 8377, 10.1093/nar/16.17.8377 Hohn, 2002, Shunting and controlled reinitiation. The encounter of cauliflower mosaic virus with the translational machinery, Cold Spring Harbor Symp Quant Biol, 66, 269, 10.1101/sqb.2001.66.269 Fütterer, 1993, Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA, Cell, 73, 789, 10.1016/0092-8674(93)90257-Q Schmidt-Puchta, 1997, Plant ribosome shunting in vitro, Nucleic Acids Res, 25, 2854, 10.1093/nar/25.14.2854 Schärer-Hernandez, 1998, Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA in transgenic tobacco plants, Virology, 242, 403, 10.1006/viro.1998.9038 Ryabova, 2000, Ribosome shunting in cauliflower mosaic virus 35S RNA leader is a special case of reinitiation of translation functioning in plant and animal systems, Genes Dev, 14, 817, 10.1101/gad.14.7.817 Kozak, 1999, Initiation of translation in prokaryotes and eukaryotes, Gene, 234, 187, 10.1016/S0378-1119(99)00210-3 Pooggin, 1998, Forced evolution reveals the importance of short open reading frame A and secondary structure in the cauliflower mosaic virus 35S RNA leader, J Virol, 72, 4157, 10.1128/JVI.72.5.4157-4169.1998 Pooggin, 2006, Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus, RNA, 12, 841, 10.1261/rna.2285806 Pooggin, 2008, Cross-species functionality of pararetroviral elements driving ribosome shunting, PLoS ONE, 3, e1650, 10.1371/journal.pone.0001650 Pooggin, 1999, A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses, J Gen Virol, 80, 2217, 10.1099/0022-1317-80-8-2217 Stavolone, 2003, Characterization of Cestrum yellow leaf curling virus: a new member of the family Caulimoviridae, J Gen Virol, 84, 3459, 10.1099/vir.0.19405-0 Pooggin, 2012, Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause Rice Tungro disease, PLoS Pathog, e1002568, 10.1371/journal.ppat.1002568 Schepetilnikov, 2009, Molecular dissection of the prototype foamy virus (PFV) RNA 59-UTR identifies essential elements of a ribosomal shunt, Nucleic Acids Res, 37, 5838, 10.1093/nar/gkp609 Dixon, 1984, Initiation of translation of the cauliflower mosaic virus genome from a polycistronic mRNA: evidence from deletion mutagenesis, EMBO J, 3, 2731, 10.1002/j.1460-2075.1984.tb02203.x Scholthof, 1992, The full-length transcript of a caulimovirus is a polycistronic mRNA whose genes are trans activated by the product of gene VI, J Virol, 66, 3131, 10.1128/JVI.66.5.3131-3139.1992 Maiti, 1990, Gene expression regulated by gene VI of caulimovirus: transactivation of downstream genes of transcripts by gene VI of peanut chlorotic streak virus in transgenic tobacco, Virus Res, 57, 113, 10.1016/S0168-1702(98)00088-4 Zijlstra, 1992, Cauliflower mosaic virus gene VI controls translation from dicistronic expression units in transgenic Arabidopsis plants, Plant Cell, 4, 1471, 10.1105/tpc.4.12.1471 Park, 2004, Eucaryotic initiation factor 4B controls eIF3-mediated ribosomal entry of viral reinitiation factor, EMBO J, 23, 1381, 10.1038/sj.emboj.7600140 Thiébeauld, 2009, A new plant protein interacts with eIF3 and 60S to enhance virusactivated translation re-initiation, EMBO J, 28, 3171, 10.1038/emboj.2009.256 Schepetilnikov, 2013, TOR and S6K1 promote translation reinitiation of uORF-containing mRNAs via phosphorylation of eIF3h, EMBO J, 32, 1087, 10.1038/emboj.2013.61 Shepherd, 1979, Isolation and properties of the inclusion bodies of cauliflower mosaic virus, Virology, 102, 389, 10.1016/0042-6822(80)90106-3 Brisson, 1984, Expression of a bacterial gene in plants by using a viral vector, Nature, 310, 511, 10.1038/310511a0 De Zoeten, 1989, The expression, localization, and effect of a human interferon in plants, Virology, 172, 213, 10.1016/0042-6822(89)90123-2 Chapdelaine, 1998, The cauliflower mosaic virus capsid protein: assembly and nucleic acid binding in vitro, Virus Genes, 17, 139, 10.1023/A:1008064623335 Himmelbach, 1996, Interaction between cauliflower mosaic virus inclusion body protein and capsid protein: implications for viral assembly, Virology, 217, 147, 10.1006/viro.1996.0102 Haas, 2005, The open reading frame VI product of cauliflower mosaic virus is a nucleocytoplasmic protein: its N terminus mediates its nuclear export and formation of electron-dense viroplasms, Plant Cell, 17, 927, 10.1105/tpc.104.029017 Haas, 2008, Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4, EMBO J, 27, 2102, 10.1038/emboj.2008.129 Malim, 1993, Rev and the fate of pre-mRNA in the nucleus: implications for the regulation of RNA processing in eukaryotes, Mol Cell Biol, 13, 6180, 10.1128/MCB.13.10.6180 Kobayashi, 2003, Dissection of cauliflower mosaic virus transactivator/viroplasmin reveals distinct essential functions in basic virus replication, J Virol, 77, 8577, 10.1128/JVI.77.15.8577-8583.2003 Cheng, 1992, Cauliflower mosaic virus: a 420 subunit (T=7), multilayer structure, Virology, 186, 655, 10.1016/0042-6822(92)90032-K Karsies, 2002, Regulated nuclear targeting of cauliflower mosaic virus, J Gen Virol, 83, 1783, 10.1099/0022-1317-83-7-1783