Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni

Arnold, 2009, A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?, Systematic Biology, 58, 283, 10.1093/sysbio/syp001 Babič, 2016, Yeasts and yeast-like fungi in tap water and groundwater, and their transmission to household appliances, Fungal Ecology, 20, 30, 10.1016/j.funeco.2015.10.001 Baloch, 2013, The relationships of Odontotrema (Odontotremataceae) and the resurrected Sphaeropezia (Stictidaceae)—new combinations and three new Sphaeropezia species, Mycologia, 105, 384, 10.3852/12-134 Baloch, 2010, Major clades and phylogenetic relationships between lichenized and non-lichenized lineages in Ostropales (Ascomycota: Lecanoromycetes), Taxon, 59, 1483, 10.1002/tax.595013 Barot, 2007, A tale of four stories: soil ecology, theory, evolution and the publication system, PLoS One, 2, e1248, 10.1371/journal.pone.0001248 Bass, 2011, Three reasons to re-evaluate fungal diversity ‘on Earth and in the ocean’, Fungal Biology Reviews, 25, 159, 10.1016/j.fbr.2011.10.003 Bezerra, 2016, Bezerromycetales and Wiesneriomycetales ord. nov. (class Dothideomycetes), with two novel genera to accommodate endophytic fungi from Brazilian cactus, Mycological Progress Bezerra, 2013, Fungal endophytes from cactus Cereus jamacaru in Brazilian tropical dry forest: a first study, Symbiosis, 60, 53, 10.1007/s13199-013-0243-1 Blackwell, 2011, The fungi: 1, 2, 3…5.1 million species?, American Journal of Botany, 98, 426, 10.3732/ajb.1000298 Cannon, 2007 Chen, 2015, Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales and a new order – Phaeomoniellales, Molecular Phylogenetics and Evolution, 85, 117, 10.1016/j.ympev.2015.01.008 Creamer, 2016, Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe, Applied Soil Ecology, 97, 112, 10.1016/j.apsoil.2015.08.006 Crous, 2001, A phylogenetic redefinition of anamorph genera in Mycosphaerella based on ITS rDNA sequence and morphology, Mycologia, 93, 1081, 10.1080/00275514.2001.12063243 de Gruyter, 2013, Redisposition of Phoma-like anamorphs in Pleosporales, Studies in Mycology, 75, 1, 10.3114/sim0004 Ekanayake, 2013, Phylogenomics of fescue grass-derived fungal endophytes based on selected nuclear genes and the mitochondrial gene complement, BMC Evolutionary Biology, 13, 10.1186/1471-2148-13-270 Eriksson, 1967, On graminicolous pyrenomycetes from Fennoscandia, Arkiv För Botanik Series, 2, 381 Eriksson, 1981, The families of bitunicate Ascomycetes, Opera Botanica, 60, 1 Eriksson, 1997, Supraordinal taxa of Ascomycota, Myconet, 1, 1 Ertz, 2015, Phylogenetic insights resolve Dacampiaceae (Pleosporales) as polypheletic: Didymocyrtis (Pleosporales, Phaeosphaeriaceae) with Phoma-like anamorphs resurrected and segregated from Polycoccum (Trypetheliales, Polycoccaceae fam. nov.), Fungal Diversity, 74, 53, 10.1007/s13225-015-0345-6 Ertz, 2014, Molecular data resolve a new order of Arthoniomycetes sister to the primarily lichenized Arthoniales and composed of black yeasts, lichenicolous and rock-inhabiting species, Fungal Diversity, 66, 113, 10.1007/s13225-013-0250-9 Fernández-Brime, 2011, Expansion of the Stictidaceae by the addition of the saxicolous lichen-forming genus Ingvariella, Mycologia, 103, 755, 10.3852/10-287 Findley, 2013, Topographic diversity of fungal and bacterial communities in human skin, Nature, 498, 367, 10.1038/nature12171 Gazis, 2012, Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes, Molecular Phylogenetics and Evolution, 65, 294, 10.1016/j.ympev.2012.06.019 Gazis, 2014, Novel endophytic lineages of Tolypocladium provide new insights into the ecology and evolution of Cordyceps-like fungi, Mycologia, 106, 1090, 10.3852/13-346 Gomes, 2013, Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi, Persoonia-Molecular Phylogeny and Evolution of Fungi, 31, 1, 10.3767/003158513X666844 Gouba, 2013, Plant and fungal diversity in gut microbiota as revealed by molecular and culture investigations, PLoS One, 8, e59474, 10.1371/journal.pone.0059474 Hawksworth, 2001, The magnitude of fungal diversity: the 1.5 million species estimate revisited, Mycological Research, 105, 1422, 10.1017/S0953756201004725 Henk, 2012, The gut fungus Basidiobolus ranarum has a large genome and different copy numbers of putatively functionally redundant elongation factor genes, PLoS One, 7, e31268, 10.1371/journal.pone.0031268 James, 2006, Reconstructing the early evolution of Fungi using a six-gene phylogeny, Nature, 443, 818, 10.1038/nature05110 Jebaraj, 2010, Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation, FEMS Microbiology Ecology, 71, 399, 10.1111/j.1574-6941.2009.00804.x Lanfear, 2012, Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses, Molecular Biology and Evolution, 29, 1695, 10.1093/molbev/mss020 Lloyd-Price, 2016, The healthy human microbiome, Genome Medicine, 8, 10.1186/s13073-016-0307-y Lumbsch, 2010, Myconet Vol 14, Fieldiana: Life and Earth Sciences, 1, 1 Lutzoni, 2001, Major fungal lineages are derived from lichen symbiotic ancestors, Nature, 411, 937, 10.1038/35082053 Lutzoni, 2000, Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology, Systematic Biology, 49, 628, 10.1080/106351500750049743 Maddison, 2005 Miadlikowska, 2014, Multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 312 genera and 66 families, Molecular Phylogenetics and Evolution, 79, 132, 10.1016/j.ympev.2014.04.003 Miller, 2010, Creating the CIPRES Science Gateway for inference of large phylogenetic trees, 1 Nelsen, 2014, Elucidating phylogenetic relationships and genus-level classification within the fungal family Trypetheliaceae (Ascomycota: Dothideomycetes), Taxon, 63, 974, 10.12705/635.9 Nelsen, 2009, Unravelling the phylogenetic relationships of lichenised fungi in Dothideomyceta, Studies in Mycology, 64, 135, 10.3114/sim.2009.64.07 Nelsen, 2011, New insights into relationships of lichen-forming Dothideomycetes, Fungal Diversity, 51, 155, 10.1007/s13225-011-0144-7 O'Brien, 2005, Fungal community analysis by large-scale sequencing of environmental samples, Applied and Environmental Microbiology, 71, 5544, 10.1128/AEM.71.9.5544-5550.2005 Pérez-Ortega, 2016, Hidden diversity of marine borderline lichens and a new order of fungi: Collemopsidiales (Dothideomyceta), Fungal Diversity, 80, 285, 10.1007/s13225-016-0361-1 Purahong, 2016, Are correlations between deadwood fungal community structure, wood physico-chemical properties and lignin-modifying enzymes stable across different geographical regions?, Fungal Ecology, 22, 98, 10.1016/j.funeco.2016.01.002 Resl, 2015, Diagnostics for a troubled backbone: testing topological hypotheses of trapelioid lichenized fungi in a large-scale phylogeny of Ostropomycetidae (Lecanoromycetes), Fungal Diversity, 73, 239, 10.1007/s13225-015-0332-y Rodríguez, 1990, The general stochastic model of nucleotide substitution, Journal of Theoretical Biology, 142, 485, 10.1016/S0022-5193(05)80104-3 Roeselers, 2015, Microbial biogeography of drinking water: patterns in phylogenetic diversity across space and time, Environmental Microbiology, 17, 2505, 10.1111/1462-2920.12739 Roeselers, 2011, Evidence for a core gut microbiota in the zebrafish, The ISME Journal, 5, 1595, 10.1038/ismej.2011.38 Roger, 1999, An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes, Molecular Biology and Evolution, 16, 218, 10.1093/oxfordjournals.molbev.a026104 Sailer, 2010, Forming of a functional biofilm on wood surfaces, Ecological Engineering, 36, 163, 10.1016/j.ecoleng.2009.02.004 Samson, 2010 Schoch, 2009, A class-wide phylogenetic assessment of Dothideomycetes, Studies in Mycology, 64, 1, 10.3114/sim.2009.64.01 Schoch, 2015, Pezizomycotina: Dothideomycetes and Arthoniomycetes, vol. VII, 143 Schoch, 2012, Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi, Proceedings of the National Academy of Sciences of the United States of America, 109, 6241, 10.1073/pnas.1117018109 Schoch, 2009, The Ascomycota tree of life: a phylum wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits, Systematic Biology, 58, 224, 10.1093/sysbio/syp020 Spatafora, 2006, A five-gene phylogenetic analysis of the Pezizomycotina, Mycologia, 98, 1020, 10.1080/15572536.2006.11832630 Spribille, 2014, Molecular systematics of the wood-inhabiting, lichen-forming genus Xylographa (Baeomycetales, Ostropomycetidae) with eight new species, Acta Universitatis Upsaliensis Symbolae botanicae Upsalienses: Arbeten fran Botaniska institutionerna i Uppsala, 37, 1 Stamatakis, 2006, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, 22, 2688, 10.1093/bioinformatics/btl446 Stamatakis, 2008, A rapid bootstrap algorithm for the RAxML Web servers, Systematic Biology, 57, 758, 10.1080/10635150802429642 Stchigel, 2001, Antarctomyces psychrotrophicus gen. et sp. nov., a new ascomycete from Antarctica, Mycological Research, 105, 377, 10.1017/S0953756201003379 Swofford U'Ren, 2016, Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota), Molecular Phylogenetics and Evolution, 98, 210, 10.1016/j.ympev.2016.02.010 van Nieuwenhuijzen, 2016, Aureobasidium melanogenum: a native of dark biofinishes on wood, Antonie van Leeuwenhoek, 109, 661, 10.1007/s10482-016-0668-7 van Nieuwenhuijzen, 2015, Detection of outdoor mould staining as biofinish on oil treated wood, International Biodeterioration & Biodegradation, 105, 215, 10.1016/j.ibiod.2015.09.001 Verkley, 2014, Novel genera and species of coniothyrium-like fungi in Montagnulaceae (Ascomycota), Persoonia-Molecular Phylogeny and Evolution of Fungi, 32, 25, 10.3767/003158514X679191 Verkley, 2013, A new approach to species delimitation in Septoria, Studies in Mycology, 75, 213, 10.3114/sim0018 Wedin, 2006, Stictis s. lat. (Ostropales, Ascomycota) in northern Scandinavia, with a key and notes on morphological variation in relation to lifestyle, Mycological Research, 110, 773, 10.1016/j.mycres.2006.04.010 Wedin, 2005, Generic delimitations in the family Stictidaceae (Ostropales, Ascomycota): the Stictis–Conotrema problem, The Lichenologist, 37, 67, 10.1017/S0024282904014653 Wheeler, 2007, Database resources of the national center for biotechnology information, Nucleic Acids Research, 35, D5, 10.1093/nar/gkl1031 Wijayawardene, 2014, Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names, Fungal Diversity, 69, 1, 10.1007/s13225-014-0309-2 Winka, 2000