GLYDE-II: The GLYcan data exchange format

Aoki-Kinoshita, 2016, GlyTouCan 1.0—the international glycan structure repository, Nucleic Acids Res., 44, D1237, 10.1093/nar/gkv1041 Banin, 2002, A novel LinearCode nomenclature for complex carbohydrates, Trends Glycosci. Glycotechnol., 14, 127, 10.4052/tigg.14.127 Bohne-Lang, 2001, LINUCS: linear notation for unique description of carbohydrate sequences, Carbohydr. Res., 336, 1, 10.1016/S0008-6215(01)00230-0 Casati, 1999 Cummings, 2014, The challenge and promise of glycomics, Chem. Biol., 21, 1, 10.1016/j.chembiol.2013.12.010 Eavenson, 2015, Qrator: a web-based curation tool for glycan structures, Glycobiology, 25, 66, 10.1093/glycob/cwu090 Egorova, 2014, Expansion of coverage of carbohydrate structure database (CSDB), Carbohydr. Res., 389, 112, 10.1016/j.carres.2013.10.009 Hashimoto, 2006, KEGG as a glycome informatics resource, Glycobiology, 16, 63R, 10.1093/glycob/cwj010 Herget, 2008, GlycoCT—a unifying sequence format for carbohydrates, Carbohydr. Res., 343, 2162, 10.1016/j.carres.2008.03.011 Kikuchi, 2005, The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures, Bioinformatics, 21, 1717, 10.1093/bioinformatics/bti152 Kunz, 2002, Emil Fischer—unequalled classicist, master of organic chemistry research, and inspired trailblazer of biological chemistry, Angew. Chem. Int. Ed., 41, 4439, 10.1002/1521-3773(20021202)41:23<4439::AID-ANIE4439>3.0.CO;2-6 Packer, N.H., von der Lieth, C.-W., Aoki-Kinoshita, K.F., Lebrilla, C.B., Paulson, J.C., Raman, R., Rudd, P., Sasisekharan, R., Taniguchi, N., York, W.S., 2008. Frontiers in glycomics: bioinformatics and biomarkers in disease. An NIH white paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006). Proteomics 8, 8–20. doi:10.1002/pmic.200700917. Ranzinger, 2011, GlycomeDB—a unified database for carbohydrate structures, Nucleic Acids Res., 39, D373, 10.1093/nar/gkq1014 Sahoo, 2005, GLYDE—an expressive XML standard for the representation of glycan structure, Carbohydr. Res., 340, 2802, 10.1016/j.carres.2005.09.019 Tanaka, 2014, WURCS: the Web3 unique representation of carbohydrate structures, J. Chem. Inf. Model., 54, 1558, 10.1021/ci400571e Varki, 2009, Historical background and overview Walt, 2012 York, 2014, MIRAGE—the minimum information required for a glycomics experiment, Glycobiology, 24, 402, 10.1093/glycob/cwu018