Estimation of hominoid phylogeny from a DNA hybridization data set
Tóm tắt
Analysis of the expanded data set of Sibley and Ahlquist (1987) on primate phylogeny using a maximum likelihood mixed model analysis of variance method shows that there is significant evidence for resolving theHomo-Pan-Gorilla trifurcation in favor of aHomo-Pan clade. The resulting tree is close to that estimated by Sibley and Ahlquist (1984). The mixed model can be used to test a number of hypotheses about the existence of components of variance and the linearity of the relationship between branch length and expected distance. No evidence is found that there is a variance component for extract, or for the individual from which the extract was taken. A variance component for experiment does seem to exist, presumably arising as a result of error of measurement of the common standard from which all values in the same experiment were substracted. There is significant evidence that the relationship between total branch length between species and their expected distances is nonlinear, or else that the measurement error on larger distances is greater than on smaller ones. Allowing for the nonlinearity might cause one to infer the time of distant common ancestors as less remote than the measured hybridization values would imply if used directly.
Tài liệu tham khảo
citation_journal_title=J Mol Evol; citation_title=Mitochondrial DNA sequences of primates: tempo and mode of evolution; citation_author=WM Brown, EM Prager, A Wang, AC Wilson; citation_volume=18; citation_publication_date=1982; citation_pages=225-239; citation_id=CR1
citation_journal_title=J Roy Statist Soc B; citation_title=Maximum likelihood from incomplete data via the EM algorithm; citation_author=AP Dempster, MN Laird, DB Rubin; citation_volume=39; citation_publication_date=1977; citation_pages=1-38; citation_id=CR2
citation_title=Distance data in phylogenetic analysis; citation_inbook_title=Advances in cladistics. Proceedings of the first meeting of the Willi Hennig Society; citation_publication_date=1981; citation_pages=3-23; citation_id=CR3; citation_author=JS Farris; citation_publisher=New York Botanical Garden
citation_journal_title=Cladistics; citation_title=Distance data revisited; citation_author=JS Farris; citation_volume=1; citation_publication_date=1985; citation_pages=67-85; citation_id=CR4
citation_journal_title=Cladistics; citation_title=Distances and statistics; citation_author=JS Farris; citation_volume=2; citation_publication_date=1986; citation_pages=144-157; citation_id=CR5
citation_journal_title=J Roy Statist Soc A; citation_title=Statistical inference of phylogenies; citation_author=J Felsenstein; citation_volume=146; citation_publication_date=1983; citation_pages=246-272; citation_id=CR6
citation_journal_title=Evolution; citation_title=Distance methods for inferring phylogenies: a justification; citation_author=J Felsenstein; citation_volume=38; citation_publication_date=1984; citation_pages=16-24; citation_id=CR7
citation_journal_title=Cladistics; citation_title=Distance methods: reply to Farris; citation_author=J Felsenstein; citation_volume=2; citation_publication_date=1986; citation_pages=130-143; citation_id=CR8
citation_journal_title=Science; citation_title=Construction of phylogenetic trees; citation_author=WM Fitch, E Margoliash; citation_volume=155; citation_publication_date=1967; citation_pages=279-284; citation_id=CR9
citation_title=Evolution of protein molecules; citation_inbook_title=Mammalian protein metabolism; citation_publication_date=1969; citation_pages=21-123; citation_id=CR10; citation_author=TH Jukes; citation_author=CH Cantor; citation_publisher=Academic Press
citation_journal_title=Mol Biol Evol; citation_title=Phylogeny and DNA-DNA hybridization; citation_author=M Ruvolo, TF Smith; citation_volume=3; citation_publication_date=1986; citation_pages=285-289; citation_id=CR11
citation_journal_title=Mol Biol Evol; citation_title=On the delta Q-test of Templeton; citation_author=N Saitou; citation_volume=3; citation_publication_date=1986; citation_pages=282-284; citation_id=CR12
citation_journal_title=J Mol Evol; citation_title=The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization; citation_author=CG Sibley, JE Ahlquist; citation_volume=20; citation_publication_date=1984; citation_pages=2-15; citation_id=CR13
citation_journal_title=J Mol Evol; citation_title=DNA hybridization evidence of homonoid phylogeny: results from an expanded data set; citation_author=CG Sibley, JE Ahlquist; citation_volume=26; citation_publication_date=1987; citation_pages=99-122; citation_id=CR14
citation_journal_title=Evolution; citation_title=Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes; citation_author=AR Templeton; citation_volume=37; citation_publication_date=1983; citation_pages=221-244; citation_id=CR15
citation_journal_title=Mol Biol Evol; citation_title=The phylogeny of the hominoid primates: a statistical analysis of the DNA-DNA hybridization data; citation_author=AR Templeton; citation_volume=2; citation_publication_date=1985; citation_pages=420-433; citation_id=CR16
citation_journal_title=Mol Biol Evol; citation_title=Further comments on the statistical analysis of DNA-DNA hybridization data; citation_author=AR Templeton; citation_volume=3; citation_publication_date=1986; citation_pages=290-295; citation_id=CR17