Characterization of root-nodule bacteria isolated from Vicia faba and selection of plant growth promoting isolates

Abbott SL, Janda JM (1997) Enterobacter cancerogenus (“Enterobacter taylorae”) infections associated with severe trauma or crush injuries. Am J Clin Pathol 107:359–361 Adamek M, Overhage J, Bathe S, Winter J, Fischer R, Schwartz T (2011) Genotyping of environmental and clinical Stenotrophomonas maltophilia isolates and their pathogenic potential. PLoS ONE 6(11):e27615. doi:10.1371/journal.pone.0027615 Alexander DB, Zuberer DA (1991) Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol Fert Soils 2:39–45 Antoun H, Prévost D (2005) Ecology of plant growth Promoting Rhizobacteria. ZA Siddiqui (ed.) PGPR: Biocontrol and Biofertilization. Springer, Dordrecht, pp 1–38 Beneduzi A, Peres D, Vargas LK, Bodanese-Zanettini MH, Passaglia LMP (2008) Evaluation of genetic diversity and plant growth promoting activities of nitrogen-fixing bacilli isolated from rice fields in South Brazil. Appl Soil Ecol 39:311–320 Capdevila JA, Bisbe V, Gasser I, Zuazu J, Olivé T, Fernández F, Pahissa Berga A (1998) Enterobacter amnigenus. An unusual human pathogen. Enferm Infecc Microbiol Clin 16:364–366 Chihaoui SA, Mhadhbi H, Mhamdi R (2012) The antibiosis of nodule-endophytic agrobacteria and its potential effect on nodule functioning of Phaseolus vulgaris. Arch Microbiol 194:1013–1021 de Lajudie P, Willems A, Nick G, Mohamed TS, Torck U, Filali-Maltouf A, Kersters K, Dreyfus B, Lindstrom K, Gillis M (1999) Agrobacterium bv.1 strains isolated from nodules of tropical legumes. Syst Appl Microbiol 22:119–132 Gao J, Terefework Z, Chen W, Lindstrom K (2001) Genetic diversity of rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China. J Biotechnol 91:155–168 Glick BR, Todorovic B, Czarny J, Cheng Z, Duan J, McConkey B (2007) Promotion of plant growth by bacterial ACC deaminase. Crit Rev Plant Sci 26:227–242 Glickmann E, Dessaux Y (1995) A critical examination of the specificity of the Salkowski reagent for indolic compounds produced by phytopathogenic bacteria. App Environ Microbiol 61:793–796 Ibanez F, Angelini J, Taurian T, Tonelli ML, Fabra A (2009) Endophytic occupation of peanut root nodules by opportunistic Gammaproteobacteria. Syst Appl Microbiol 32:49–55 Jacobsen CS (1997) Plant protection and rhizosphere colonization of barley by seed inoculated herbicide degrading Burkholderia (Pseudomonas) cepacia DBO1 (pRO101) in 2, 4-D contaminated soil. Plant Soil 189:139–144 Kan FL, Chen ZY, Wang ET, Tian CF, Sui XH, Chen WX (2007) Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai–Tibet Plateau and in other zones of China. Arch Microbiol 188:103–115 Kennedy IR, Choudhury ATM, Mihaly A, Kecske′s L (2004) Non-symbiotic bacterial diazotrophs in crop-farming systems: can their potential for plant growth promotion be better exploited? Soil Biol Biochem 36:1229–1244 Lee J, Carey J, Perlman DC (2006) Pneumonia and bacteremia due to Serratia odorifera. J Infection 53:212–214 Lin DX, Wang ET, Tang H, Han TX, He YR, Guan SH, Chen WX (2008) Shinella kummerowiae sp. nov., a symbiotic bacterium isolated from root nodules of the herbal legume Kummerowia stipulacea. Int J Syst Evol Microbiol 58:1409–1413 Mehta S, Nautiyal CS (2001) An efficient method for qualitative screening of phosphate-solubilizing bacteria. Curr Microbiol 43:51–56 Mhamdi R, Laguerre G, Aouani ME, Mars M, Amarger N (2002) Different species and symbiotic genotypes of field rhizobia can nodulate Phaseolus vulgaris in Tunisian soils. FEMS Microbiol Ecol 41:77–84 Mhamdi R, Mrabet M, Laguerre G, Tiwari R, Aouani ME (2005) Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains. Can J Microbiol 51:105–111 Mnasri B, Aouani ME, Mhamdi R (2007) Nodulation and growth of common bean (Phaseolus vulgaris) under water deficiency. Soil Biol Biochem 39:1744–1750 Moulin L, Munive A, Dreyfus B, Boivin-Masson C (2001) Nodulation of legumes by members of beta-class of Proteobacteria. Nature 411:948–950 Muresu R, Maddau G, Delogu G, Cappuccinelli P, Squartini A (2010) Bacteria colonizing root nodules of wild legumes exhibit virulence-associated properties of mammalian pathogens. Antonie Van Leeuwenhoek 97:143–153 Pilet PE, Chollet R (1970) Sur le dosage colorimétrique de l’acide indolylacétique. C R Acad Sci Ser D 271:1675–1678 Ramezanpour MR (2011) Biochemical characteristics and genetic diversity of fluorescent pseudomonads isolated from rice rhizosphere in north of Iran. Am Eurasian J Agric Environ Sci 10:180–185 Raz R, Colodner R, Kunin CM (2005) Who are you-Staphylococcus saprophyticus? Clin Infect Dis 40:896–898 Rivas R, Velazquez E, Willems A, Vizcaino N, Subbarao NS, Mateos PF, Gillis M, Dazzo FB, Molina EM (2002) A new species of Devosia that forms a unique nitrogen fixing root symbiosis with aquatic legume Neptunia natans (l.f) Druce. Appl Environ Microbiol 68:5217–5222 Saïdi S, Zribi K, Badri Y, Aouani ME (2009) Genetic characterization and symbiotic proprieties of native sinorhizobia trapped by Medicago sativa nodules on Tunisian soils. Aust J Soil Res 47:321–327 Saïdi S, Mnasri B, Mhamdi R (2011) Diversity of nodule endophytic agrobacteria-like strains associated to different grain legumes in Tunisia. Syst Appl Microbiol 34:524–530 Salem S, Saidi S, Chihaoui SA, Mhamdi R (2012) Inoculation of Phaseolus vulgaris, Medicago laciniata and Medicago polymorpha with Agrobacterium sp. strain 10C2 may enhance nodulation and shoot dry weight but does not affect host range specificity. Ann Microbiol 62:1811–1817 Sturz AV, Christie BR, Matheson BG, Nowak J (1997) Biodiversity of endophytic bacteria which colonize red clover nodules, roots, stems and foliage and their influence on host growth. Biol Fert Soils 25:13–19 Sy A, Giraud E, Jourand P, Garcia N, Willems A, de Lajudie P, Prin Y, Neyra M, Gillis M, Boivin-Masson C, Dreyfus B (2001) Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes. J Bacteriol 183:214–220 Taghavi S, Barac T, Greenberg B, Borremans B, Vangronsveld J, van der Lelie D (2005) Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene. Appl Environ Microbiol 71:8500–8505 Tilak KVBR, Ranganayaki N, Pal KK, De R, Saxena AK, Nautiyal CS, Mittal S, Tripathi AK, Johri BN (2005) Diversity of plant growth and soil health supporting bacteria. Curr Sci 89:136–150 Trabelsi D, Ben Ammar H, Mengoni A, Mhamdi R (2012) Appraisal of the crop-rotation effect of rhizobial inoculation on potato cropping systems in relation to soil bacterial communities. Soil Biol Biochem 54:1–6 Valverde A, Velazquez E, Fernandez-Santos F, Vizcaıno N, Rivas R, Mateosn PF, Martınez-Molina E, Igual JM, Willems A (2005) Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in Spanish soils. Int J Syst Evol Microbiol 55:1985–1989 van Berkum P, Eardly BD (2002) The aquatic budding bacterium Blastobacter denitrificans is a nitrogen fixing symbiont of Aeschynomene indica. Appl Environ Microb 68:1132–1136 Vandamme P, Henry D, Coenye T, Nzula S, Vancanneyt M, LiPuma JJ, Speert DP, Govan JR, Mahenthiralingam E (2002) Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol Med Microbiol 33(2):143–149 Vincent JM (1970) A manual for the practical study of root-nodule bacteria. IBP Handbook, vol 15. Blackwell, Oxford Zakhia F, Jeder H, Willems A, Gillis M, Dreyfus B, de Lajudie P (2006) Diverse bacteria associated with root nodules of spontaneous legumes in Tunisia and first report for nifH-like gene within the genera Microbacterium and Starkeya. Microb Ecol 51:375–393