Characterization of a novel nornicotine-degrading strain Mycolicibacterium sp. SMGY-1XX from a nornicotine-degrading consortium and preliminary elucidation of its biodegradation pathway by multi-omics analysis

Banožić, 2020, Recent advances in extraction of bioactive compounds from tobacco industrial waste-a review, Ind Crops Prod, 144, 10.1016/j.indcrop.2019.112009 Benowitz, 2016, Cardiovascular toxicity of nicotine: Implications for electronic cigarette use, Trends Cardiovasc Med, 26, 515, 10.1016/j.tcm.2016.03.001 Benowitz, 2017, Cardiovascular effects of electronic cigarettes, Nat Rev Cardiol, 14, 447, 10.1038/nrcardio.2017.36 Brandsch, 2006, Microbiology and biochemistry of nicotine degradation, Appl Microbiol Biotechnol, 69, 493, 10.1007/s00253-005-0226-0 Cai, 2016, Contribution of nicotine and nornicotine toward the production of N′-Nitrosonornicotine in air-cured tobacco (Nicotiana tabacum), J Nat Prod, 79, 754, 10.1021/acs.jnatprod.5b00678 Caine, 2014, Nicotine-like behavioral effects of the minor tobacco alkaloids nornicotine, anabasine, and anatabine in male rodents, Exp Clin Psychopharmacol, 22, 9, 10.1037/a0035749 Chaumeil, 2019, GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database, Bioinformatics, 36, 1925, 10.1093/bioinformatics/btz848 Chen, 2015, Identification of precursors and mechanisms of tobacco-specific nitrosamine formation in water during chloramination, Environ Sci Technol, 49, 459, 10.1021/es505057h Chen, 2017, Acetylsalicylic acid application decreased tobacco-specific nitrosamines and its precursors but maintained quality of air-cured burley tobacco (Nicotiana tabacum L.), Ind Crops Prod, 104, 221, 10.1016/j.indcrop.2017.04.031 Chun, 2014, Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea, Int J Syst Evolut Microbiol, 64, 316, 10.1099/ijs.0.054171-0 Cobzaru, 2011, Homologous gene clusters of nicotine catabolism, including a new omega-amidase for α-ketoglutaramate, in species of three genera of Gram-positive bacteria, Res Microbiol, 162, 285, 10.1016/j.resmic.2011.01.001 de Franco, 2014, Photocatalytic degradation of nicotine in an aqueous solution using unconventional supported catalysts and commercial ZnO/TiO(2) under ultraviolet radiation, Sci Total Environ, 494–495, 97, 10.1016/j.scitotenv.2014.06.139 Ganas, 2008, Two closely related pathways of nicotine catabolism in Arthrobacter nicotinovorans and Nocardioides sp. strain JS614, Arch Microbiol, 189, 511, 10.1007/s00203-007-0340-8 Golubev, 2021, Mycolicibacterium sp. strain PAM1, an alfalfa rhizosphere dweller, catabolizes PAHs and promotes partner-plant growth, Microbiol Res, 253, 10.1016/j.micres.2021.126885 Gonzalez Alonso, 2012, Nicotine occurrence in bottled mineral water: analysis of 10 brands of water in Spain, Sci Total Environ, 416, 527, 10.1016/j.scitotenv.2011.11.046 Gupta, 2018, Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera, Front Microbiol, 9, 67, 10.3389/fmicb.2018.00067 Hu, 2015, Simultaneous extraction of nicotine and solanesol from waste tobacco materials by the column chromatographic extraction method and their separation and purification, Sep Purif Technol, 146, 1, 10.1016/j.seppur.2015.03.016 Huang, 2017, Genomic and transcriptomic analyses of Agrobacterium tumefaciens S33 reveal the molecular mechanism of a novel hybrid nicotine-degrading pathway, Sci Rep, 7, 4813, 10.1038/s41598-017-05320-1 Igloi, 2003, Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system, J Bacteriol, 185, 1976, 10.1128/JB.185.6.1976-1986.2003 Kandil, 2015, Isolation and characterization of a novel imidacloprid-degrading Mycobacterium sp. strain MK6 from an Egyptian soil, J Agric Food Chem, 63, 4721, 10.1021/acs.jafc.5b00754 Konishi, 2010, Chronic exposure to nicotine impairs cholinergic angiogenesis, Vasc Med, 15, 47, 10.1177/1358863X09106326 Lazarevic, 2011, Adsorption of nicotine from aqueous solution onto hydrophobic zeolite type USY, Appl Surf Sci, 257, 8017, 10.1016/j.apsusc.2011.04.076 Lee, 2016, OrthoANI: an improved algorithm and software for calculating average nucleotide identity, Int J Syst Evolut Microbiol, 66, 1100, 10.1099/ijsem.0.000760 Li, 2017, Characterization and genome analysis of a nicotine and nicotinic acid-degrading strain Pseudomonas putida JQ581 isolated from marine, Mar Drugs, 15, 10.3390/md15060156 Li, 2017, Comparative genomics reveals specific genetic architectures in nicotine metabolism of Pseudomonas sp. JY-Q, Front Microbiol, 8, 2085, 10.3389/fmicb.2017.02085 Lian, 2017, Photochemical transformation of nicotine in wastewater effluent, Environ Sci Technol, 51, 11718, 10.1021/acs.est.7b03223 Liu, 2015, Nicotine-degrading microorganisms and their potential applications, Appl Microbiol Biotechnol, 99, 3775, 10.1007/s00253-015-6525-1 Liu, 2018, Integrated transcriptome and proteome studies reveal the underlying mechanisms for sterol catabolism and steroid production in Mycobacterium neoaurum, J Agric Food Chem, 66, 9147, 10.1021/acs.jafc.8b02714 Ma, 2014, Isolation, transposon mutagenesis, and characterization of the novel nicotine-degrading strain Shinella sp. HZN7, Appl Microbiol Biotechnol, 98, 2625, 10.1007/s00253-013-5207-0 Meng, 2010, A novel pathway for nicotine degradation by Aspergillus oryzae 112822 isolated from tobacco leaves, Res Microbiol, 161, 626, 10.1016/j.resmic.2010.05.017 Moghbel, 2017, Nicotine alkaloid levels, and nicotine to nornicotine conversion, in Australian Nicotiana species used as chewing tobacco, Heliyon, 3, 10.1016/j.heliyon.2017.e00469 Mu, 2020, Bacterial catabolism of nicotine: catabolic strains, pathways and modules, Environ Res, 183, 10.1016/j.envres.2020.109258 Najme, 2021, Identification and characterization of nornicotine degrading strain Arthrobacter sp. NOR5, Sci Total Environ, 764, 10.1016/j.scitotenv.2020.142894 Passananti, 2014, Photoenhanced transformation of nicotine in aquatic environments: involvement of naturally occurring radical sources, Water Res, 55, 106, 10.1016/j.watres.2014.02.016 Qiu, 2016, Conversion of nornicotine to 6-hydroxy-nornicotine and 6-hydroxy-myosmine by Shinella sp. strain HZN7, Appl Microbiol Biotechnol, 100, 10019, 10.1007/s00253-016-7805-0 Qiu, 2011, A sirA-like gene, sirA2, is essential for 3-succinoyl-pyridine metabolism in the newly isolated nicotine-degrading Pseudomonas sp. HZN6 strain, Appl Microbiol Biotechnol, 92, 1023, 10.1007/s00253-011-3353-9 Qiu, 2012, Functional identification of two novel genes from Pseudomonas sp. strain HZN6 involved in the catabolism of nicotine, Appl Environ Microbiol, 78, 2154, 10.1128/AEM.07025-11 Ren, 2021, Phthalic acid esters degradation by a novel marine bacterial strain Mycolicibacterium phocaicum RL-HY01: characterization, metabolic pathway and bioaugmentation, Sci Total Environ, 791, 10.1016/j.scitotenv.2021.148303 Strezov, 2012, Assessment of the thermal processing behavior of tobacco waste, Energy Fuels, 26, 5930, 10.1021/ef3006004 Tang, 2013, Systematic unraveling of the unsolved pathway of nicotine degradation in Pseudomonas, PLoS Genet, 9, 10.1371/journal.pgen.1003923 Valcarcel, 2011, Detection of pharmaceutically active compounds in the rivers and tap water of the Madrid Region (Spain) and potential ecotoxicological risk, Chemosphere, 84, 1336, 10.1016/j.chemosphere.2011.05.014 von Weymarn, 2016, Quantitation of the minor tobacco alkaloids nornicotine, anatabine, and anabasine in smokers' urine by high throughput liquid chromatography-mass spectrometry, Chem Res Toxicol, 29, 390, 10.1021/acs.chemrestox.5b00521 Wang, 2017, Characterization of a novel nicotine degradation gene cluster ndp in Sphingomonas melonis TY and its evolutionary analysis, Front Microbiol, 8, 337 Wang, 2013, Bioaugmentation of activated sludge with Acinetobacter sp. TW enhances nicotine degradation in a synthetic tobacco wastewater treatment system, Bioresour Technol, 142, 445, 10.1016/j.biortech.2013.05.067 Wang, 2009, Bioaugmentation with the nicotine-degrading bacterium Pseudomonas sp. HF-1 in a sequencing batch reactor treating tobacco wastewater: degradation study and analysis of its mechanisms, Water Res, 43, 4187, 10.1016/j.watres.2009.07.012 Wang, 2012, Identification of nicotine biotransformation intermediates by Agrobacterium tumefaciens strain S33 suggests a novel nicotine degradation pathway, Appl Microbiol Biotechnol, 95, 1567, 10.1007/s00253-012-4007-2 Wu, 2014, Identification of tobacco-specific nitrosamines as disinfection byproducts in chloraminated water, Environ Sci Technol, 48, 1828, 10.1021/es405075g Wu, 2002, Determination of nicotine and other minor alkaloids in international cigarettes by solid-phase microextraction and gas chromatography/mass spectrometry, Anal Chem, 74, 4878, 10.1021/ac020291p Wu, 2015, Kinetics and reaction chemistry of pyrolysis and combustion of tobacco waste, Fuel, 156, 71, 10.1016/j.fuel.2015.04.016 Yan, 2018, Pyrolysis of tobacco wastes for bio-oil with aroma compounds, J Anal Appl Pyrolysis, 136, 248, 10.1016/j.jaap.2018.09.016 Yang, 2021, Colonization and performance of a pyrene-degrading bacterium Mycolicibacterium sp. Pyr9 on root surfaces of white clover, Chemosphere, 263, 10.1016/j.chemosphere.2020.127918 Zhao, 2016, RNA interference of the nicotine demethylase gene CYP82E4v1 reduces nornicotine content and enhances Myzus persicae resistance in Nicotiana tabacum L, Plant Physiol Biochem, 107, 214, 10.1016/j.plaphy.2016.04.016 Zwickenpflug, 1998, Occurrence of the tobacco alkaloid myosmine in nuts and nut products of Arachus hypogaea and Corylus avellana, J Agric Food Chem, 46, 2703, 10.1021/jf9801419