Rapid detection of potyviruses from crude plant extracts

Bebber, 2015, Range-expanding pests and pathogens in a warming world, Annu. Rev. Phytopathol., 53, 335, 10.1146/annurev-phyto-080614-120207 Martinelli, 2015, Advanced methods of plant disease detection. A review, Agron. Sustain. Dev., 35, 1, 10.1007/s13593-014-0246-1 Mumford, 2016, The role and challenges of new diagnostic technology in plant biosecurity, Food Secur., 8, 103, 10.1007/s12571-015-0533-y Asiedu, 2010, Crops that feed the world 1. Yams, Food Secur., 2, 305, 10.1007/s12571-010-0085-0 Otoo, 2016, In vivo yam (Dioscorea spp.) vine multiplication technique: the plausible solution to seed yam generation menace, J. Agric. Sci., 8, 88 Kenyon, 2008, Yams (Dioscorea spp.) from the South Pacific Islands contain many novel badnaviruses: implications for international movement of yam germplasm, Arch. Virol., 153, 877, 10.1007/s00705-008-0062-5 Kenyon, 2001, An overview of viruses infecting yams in Sub-Saharan Africa Mambole, 2014, Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams, Arch. Virol., 159, 3421, 10.1007/s00705-014-2211-3 Menzel, 2014, Characterization of an isometric virus isolated from yam (Dioscorea rotundata) in Nigeria suggests that it belongs to a new species in the genus Aureusvirus, Arch. Virol., 159, 603, 10.1007/s00705-013-1845-x Seal, 2014, The prevalence of badnaviruses in West African yams (Dioscorea cayenensis-rotundata) and evidence of endogenous pararetrovirus sequences in their genomes, Virus Res., 186, 144, 10.1016/j.virusres.2014.01.007 Bömer, 2016, A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses, Viruses, 8, 14, 10.3390/v8070188 Turaki, 2017, PCR-DGGE analysis: unravelling complex mixtures of badnavirus sequences present in yam germplasm, Viruses, 9, 1, 10.3390/v9070181 Séka, 2014, Yield loss caused by yam mosaic virus ( YMV ) and cucumber mosaic virus ( CMV ) on the varieties of Dioscorea spp., Int. J. Appl. Agric. Res., 5, 64 Aighewi, 2015, Improved propagation methods to raise the productivity of yam (Dioscorea rotundata Poir.), Food Secur., 7, 823, 10.1007/s12571-015-0481-6 Maroya, 2014, vol. 40, 85 Ampofo, 2010, Integrated Crop management for sustainable yam production, 46 Njukeng, 2014, vol. 3, 1153 Mumford, 1997, Rapid single-tube immunocapture RT-PCR for the detection of two yam potyviruses, J. Virol. Methods, 69, 73, 10.1016/S0166-0934(97)00141-9 Silva, 2007, Presence of Citrus tristeza virus in Angola and São Tomé e Príncipe: characterization of isolates based on coat protein gene analysis, J. Plant Pathol., 89, 135 Bousalem, 2003, Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: an evolutionary history of yam mild mosaic virus (YMMV), Infect. Genet. Evol., 3, 189, 10.1016/S1567-1348(03)00085-6 Jones, 2014, Plant virus ecology and epidemiology: historical perspectives, recent progress and future prospects, Ann. Appl. Biol., 164, 320, 10.1111/aab.12123 Njukeng, 2005, Comparison of TAS-ELISA, dot and tissue blot, ISEM and immunocapture RT-PCR assays for the detection of yam mosaic virus in yam tissues, Crop Prot., 24, 513, 10.1016/j.cropro.2004.10.002 Eni, 2012, Re-evaluation of yam mosaic virus ( YMV ) detection methods, Acad. J. Plant Sci., 5, 18 Tomlinson, 2013, Loop-mediated isothermal amplification for rapid detection of the causal agents of cassava brown streak disease, J. Virol. Methods, 191, 148, 10.1016/j.jviromet.2012.07.015 Mumford, 2006, Advances in molecular phytodiagnostics - new solutions for old problems, Eur. J. Plant Pathol., 116, 1, 10.1007/s10658-006-9037-0 Piepenburg, 2006, DNA detection using recombination proteins, PLoS Biol., 4, 1115, 10.1371/journal.pbio.0040204 Chandu, 2016, Development of a rapid point-of-use DNA test for the screening of genuity?? roundup ready 2 yield?? soybean in seed samples, BioMed Res. Int., 2016, 10.1155/2016/3145921 Daher, 2016, Recombinase polymerase amplification for diagnostic applications, Clin. Chem., 62, 947, 10.1373/clinchem.2015.245829 Amer, 2013, A new approach for diagnosis of bovine coronavirus using a reverse transcription recombinase polymerase amplification assay, J. Virol. Methods, 193, 337, 10.1016/j.jviromet.2013.06.027 Liljander, 2015, Field-applicable recombinase polymerase amplification assay for rapid detection of Mycoplasma capricolum subsp. capripneumoniae, J. Clin. Microbiol., 53, 2810, 10.1128/JCM.00623-15 Yang, 2017, Development of real-time and lateral flow strip reverse transcription recombinase polymerase amplification assays for rapid detection of peste des petits ruminants virus, Virol. J., 14, 24, 10.1186/s12985-017-0688-6 Boyle, 2013, vol. 4, 1 Lillis, 2014, Non-instrumented incubation of a recombinase polymerase amplification assay for the rapid and sensitive detection of proviral hiv-1 dna, PLoS One, 9, 6, 10.1371/journal.pone.0108189 Mekuria, 2014, Rapid and sensitive detection of Little cherry virus 2 using isothermal reverse transcription-recombinase polymerase amplification, J. Virol. Methods, 205, 24, 10.1016/j.jviromet.2014.04.015 Zhang, 2014, Rapid diagnostic detection of plum pox virus in Prunus plants by isothermal AmplifyRP® using reverse transcription-recombinase polymerase amplification, J. Virol. Methods, 207, 114, 10.1016/j.jviromet.2014.06.026 Londoño, 2016, Evaluation of recombinase polymerase amplification for detection of begomoviruses by plant diagnostic clinics, Virol. J., 13, 48, 10.1186/s12985-016-0504-8 Silva, 2015, Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification, J. Virol. Methods, 222, 138, 10.1016/j.jviromet.2015.06.011 Chomczynski, 2006, Alkaline polyethylene glycol-based method for direct PCR from bacteria, eukaryotic tissue samples, and whole blood, Biotechniques, 40, 454, 10.2144/000112149 Hwang, 2013, A rapid and simple genotyping method for various plants by direct-PCR, Plant Breed. Biotechnol., 1, 290, 10.9787/PBB.2013.1.3.290 Lillis, 2016, Factors influencing recombinase polymerase amplification (RPA) assay outcomes at point of care, Mol. Cell. Probes, 30, 74, 10.1016/j.mcp.2016.01.009 Hansen, 2016, Development of a recombinase polymerase amplification assay for rapid detection of the mycobacterium avium subsp. Paratuberculosis, PLoS One, 11, 10.1371/journal.pone.0168733 Kersting, 2014, Rapid detection of Plasmodium falciparum with isothermal recombinase polymerase amplification and lateral flow analysis, Malar. J., 13, 99, 10.1186/1475-2875-13-99 Santiago-Felipe, 2015, Isothermal DNA amplification strategies for duplex microorganism detection, Food Chem., 174, 509, 10.1016/j.foodchem.2014.11.080 Sun, 2016, Recombinase polymerase amplification combined with a lateral flow dipstick for rapid and visual detection of Schistosoma japonicum, Parasites Vectors, 9, 476, 10.1186/s13071-016-1745-5 Abd El Wahed, 2015, Diagnostics-in-a-Suitcase: development of a portable and rapid assay for the detection of the emerging avian influenza A (H7N9) virus, J. Clin. Virol., 69, 16, 10.1016/j.jcv.2015.05.004 Lutz, 2010, Microfluidic lab-on-a-foil for nucleic acid analysis based on isothermal recombinase polymerase amplification (RPA), Lab a Chip, 10, 887, 10.1039/b921140c Escadafal, 2014, Rapid molecular assays for the detection of yellow fever virus in low-resource settings, PLoS Neglected Trop. Dis., 8, 10.1371/journal.pntd.0002730