Distribution of the 3-hydroxyl-3-methylglutaryl coenzyme A reductase gene and isoprenoid production in marine-derived Actinobacteria

FEMS Microbiology Letters - Tập 304 Số 1 - Trang 89-96
Shams Tabrez Khan1, Miho Izumikawa1, Keiichiro Motohashi1, Akira Mukai1, Motoki Takagi1, Kazuo Shin‐ya2
1Biomedicinal Information Research Center, Japan Biological Informatics Consortium (JBIC),Tokyo, Japan
2Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan

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Altschul, 1990, Basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2

Atlas, 2000, Handbook of Microbiological Media

Bohlmann, 2008, Terpenoid biomaterials, Plant J, 54, 656, 10.1111/j.1365-313X.2008.03449.x

Bredholt, 2008, Actinomycetes from sediments in Trondheim Fjord, Norway, diversity and biological activity, 6, 12

Bringmann, 2007, Biosynthesis of isoprenoid moieties of furanonaphthoquinone I and endophenazine A in Streptomyces cinnamonensis DSM, J Org Chem, 72, 4198, 10.1021/jo0703404

Brosius, 1978, Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli, P Natl Acad Sci USA, 75, 4801, 10.1073/pnas.75.10.4801

Charan, 2005, Fumaquinone, a new prenylated naphthoquinone from Streptomyces fumanus, J Antibiot, 58, 271, 10.1038/ja.2005.32

Dairi, 2000, Cloning of the gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from terpenoid antibiotic-producing Streptomyces strains, Mol Gen Genet, 262, 957, 10.1007/PL00008664

Feling, 2003, Salinosporamide A, a highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora, 42, 355

Felsenstein, 1985, Confidence limits on phylogenies, an approach using the bootstrap, 39, 783

Fontana, 2001, Evidence for the biosynthesis of squalene via the methylerythritol phosphate pathway in a Streptomyces sp. obtained from a marine sediment, J Org Chem, 66, 6202, 10.1021/jo015751d

Funayama, 1990, Biosynthesis of furaquinocins A and B, J Org Chem, 55, 1132, 10.1021/jo00291a003

Gophna, 2005, Complex histories of hydroxyl-3-methylglutaryl-coenzyme A reductase, Mol Biol Evol, 23, 168, 10.1093/molbev/msj019

Hamano, 2001, Cloning of a gene cluster encoding enzymes responsible for the mevalonate pathway from a terpenoid-antibiotic-producing Streptomyces strain, Biosci Biotech Bioch, 65, 1627, 10.1271/bbb.65.1627

Isshiki, 1986, Biosynthetic studies of terpentecin, J Antibiot, 39, 1634, 10.7164/antibiotics.39.1634

Izumikawa, 2009, JBIR-37 and -38, novel glycosyl benzenediols, isolated from the sponge-derived fungus, Acremonium sp. SpF080624G1f01, Biosci Biotech Bioch, 73, 1898, 10.1271/bbb.90346

Izumikawa, 2010, JBIR-31, a new teleocidin analogue, produced by a salt-requiring Streptomyces sp. NBRC 105896 isolated from a marine sponge, J Antibiot, 10.1038/ja.2009.113

Küster, 1964, Selective media for isolation of Streptomycetes, Nature, 202, 928, 10.1038/202928a0

Kuzuyama, 2003, Diversity of the biosynthesis of the isoprene units, Nat Prod Rep, 20, 171, 10.1039/b109860h

Kuzuyama, 2002, Detection of the mevalonate pathway in Streptomyces species using the 3-hydroxy-3-methylglutaryl coenzyme A reductase gene, J Antibiot, 55, 919, 10.7164/antibiotics.55.919

McAlpine, 2008, Biosynthesis of diazepinomicin/ECO-4601, a Micromonospora secondary metabolite with a novel ring system, J Nat Prod, 71, 1585, 10.1021/np800376n

Motohashi, 2009a, New sesquiterpenes, JBIR-27 and -28, isolated from a tunicate-derived fungus, Penicillium sp. SS080624SCf1, J Antibiot, 62, 247, 10.1038/ja.2009.21

Motohashi, 2009b, JBIR-15, a new aspocharchin derivative, isolated from a sponge-derived fungus, Aspergillus sclerotiorum Huber Sp080903f04, Biosci Biotech Bioch, 73, 1898, 10.1271/bbb.90228

Saitou, 1987, Neighbor-joining method, a new method for reconstructing phylogenetic trees, 4, 406

Seto, 1998, Studies on the biosynthesis of terpenoids produced by Actinomycetes. Part 4. Formation of BE-40644 by the mevalonate and nonmevalonate pathways, Tetrahedron Lett, 39, 9497, 10.1016/S0040-4039(98)02154-6

Shin-ya, 1990, Biosynthetic studies of naphterpin, a terpenoid metabolite of Streptomyces, Tetrahedron Lett, 31, 6025, 10.1016/S0040-4039(00)98019-5

Shiomi, 1986, Novel antibiotics napyradiomycins production, isolation, physico-chemical properties and biological activity, J Antibiot, 39, 487, 10.7164/antibiotics.39.487

Shirling, 1966, Methods for characterization of Streptomyces species, Int J Syst Bacteriol, 16, 313, 10.1099/00207713-16-3-313

Sigmund, 2003, Detection of eubacterial 3-hydroxy-3-methylglutaryl coenzyme A reductases from natural populations of actinomycetes, Microb Ecol, 46, 106, 10.1007/s00248-002-2029-5

Takagi, 2000, A gene cluster for the mevalonate pathway from Streptomyces sp. strain CL190, J Bacteriol, 182, 4153, 10.1128/JB.182.15.4153-4157.2000

Takahashi, 1999, Purification, characterization, and cloning of a eubacterial 3-hydroxy-3-methylglutaryl coenzyme A reductase, a key enzyme involved in biosynthesis of terpenoids, J Bacteriol, 181, 1256, 10.1128/JB.181.4.1256-1263.1999

Thompson, 1997, The CLUSTAL_X windows interface, flexible strategies for multiple sequence alignment aided by quality analysis tools, 25, 4876

Zhang, 2006, Culturable actinobacteria from the marine sponge Hymeniacidon perleve, isolation and phylogenetic diversity by 16S rRNA gene-RFLP analysis, 90, 159