Anscombe, 1973, Graphs in statistical analysis, Am. Stat., 27, 17
Augusiak, 2014, Merging validation and evaluation of ecological models to ‘evaludation’: a review of terminology and a practical approach, Ecol. Model., 280, 117, 10.1016/j.ecolmodel.2013.11.009
Aumann, 2006, How transient patches affect population dynamics: the case of hypoxia and blue crabs, Ecol. Monogr., 76, 415, 10.1890/0012-9615(2006)076[0415:HTPAPD]2.0.CO;2
Aumann, 2007, A methodology for developing simulation models of complex systems, Ecol. Model., 202, 385, 10.1016/j.ecolmodel.2006.11.005
Aumann, 2011, Constructing model credibility in the context of policy appraisal, Environ. Model. Softw., 26, 258, 10.1016/j.envsoft.2009.09.006
Arii, 2008, A selection harvesting algorithm for use in spatially explicit individual-based forest simulation models, Ecol. Model., 211, 251, 10.1016/j.ecolmodel.2007.09.007
Babin-Fenske, 2011, Agent-based simulation of effects of stress on forest tent caterpillar (Malacosoma disstria Hübner) population dynamics, Ecol. Model., 222, 2561, 10.1016/j.ecolmodel.2011.04.014
Bennett, 2013, Characterising performance of environmental models, Environ. Model. Softw., 40, 1, 10.1016/j.envsoft.2012.09.011
Berger, 1999, Virtual biologists observe virtual grasshoppers: an assessment of different mobility parameters for the analysis of movement patterns, Ecol. Model., 115, 119, 10.1016/S0304-3800(98)00187-2
Bragg, 2004, A hierarchical approach for simulating northern forest dynamics, Ecol. Model., 173, 31, 10.1016/j.ecolmodel.2003.08.017
Breckling, 2006, Individual-based models as tools for ecological theory and application: understanding the emergence of organisational properties in ecological systems, Ecol. Model., 194, 102, 10.1016/j.ecolmodel.2005.10.005
Breckling, 2011, System analysis and context assessment
Carrasco, 2010, Unveiling human-assisted dispersal mechanisms in invasive alien insects: Integration of spatial stochastic simulation and phenology models, Ecol. Model., 221, 2068, 10.1016/j.ecolmodel.2010.05.012
Caron-Lormier, 2009, How might we model an ecosystem, Ecol. Model., 202, 1935, 10.1016/j.ecolmodel.2009.04.021
Castella, 2007, Combination of process-oriented and pattern-oriented models of land-use change in a mountain area of Vietnam, Ecol. Model., 202, 410, 10.1016/j.ecolmodel.2006.11.011
Charles, 2008, An individual-based model to describe a bullhead population dynamics including temperature variations, Ecol. Model., 215, 377, 10.1016/j.ecolmodel.2008.04.005
DeAngelis, 1993, Fish cohort dynamics: application of complementary modeling approaches, Am. Nat., 142, 604, 10.1086/285560
DeAngelis, 2003, In praise of mechanistically rich models, 63
Deygout, 2009, Modeling the impact of feeding stations on vulture scavenging service efficiency, Ecol. Model., 220, 1826, 10.1016/j.ecolmodel.2009.04.030
Dion, 2011, The landscape epidemiology of foot-and-mouth disease in South Africa: a spatially e0plicit multi-agent simulation, Ecol. Model., 222, 2059, 10.1016/j.ecolmodel.2011.03.026
Fei, 2012, Predicting micro thermal habitat of lizards in a dynamic thermal environment, Ecol. Model., 231, 126, 10.1016/j.ecolmodel.2012.02.012
Filatova, 2013, Spatial agent-based models for socio-ecological systems: challenges and prospects, Environ. Model. Softw., 45, 1, 10.1016/j.envsoft.2013.03.017
Fyllas, 2010, Simulating regeneration and vegetation dynamics in Mediterranean coniferous forests, Ecol. Model., 221, 1494, 10.1016/j.ecolmodel.2010.03.003
Gardner, 2003, Validation and Testing: Past lessons, present concerns, future prospects, 184
Grajetzky, 2000
van Griensven, 2006, A global sensitivity analysis tool for the parameters of multi-variable watershed models, J. Hydrol., 324, 10, 10.1016/j.jhydrol.2005.09.008
Grimm, 2002, Visual debugging: a way of analyzing, understanding and communicating bottom-up simulation models in ecology, Nat. Resour. Model., 15, 23, 10.1111/j.1939-7445.2002.tb00078.x
Grimm, 1996, Pattern-oriented modelling in population ecology, Sci. Total Environ., 183, 151, 10.1016/0048-9697(95)04966-5
Grimm, 2005
Grimm, 2005, Pattern-oriented modeling of agent-based complex systems: lessons from ecology, Science, 310, 987, 10.1126/science.1116681
Grosman, 2011, Trade-off between road avoidance and attraction by roadside salt pools in moose: an agent-based model to assess measures for reducing moose-vehicle collisions, Ecol. Model., 222, 1423, 10.1016/j.ecolmodel.2011.01.022
Hamilton, 1991, Model validation: an annotated bibliography, Commun. Stat. Theory Methods, 20, 2207, 10.1080/03610929108830628
Hawking, 1988
Henttonen, 1985, Comparison of amplitudes and frequences (spectral analysis) of density variations in long-term data sets of Chlethrionomys species, Ann. Zool. Fenn., 22, 221
Herben, 2012, Community-level effects of plant traits in a grassland community e0amined by multispecies model of clonal plant growth, Ecol. Model., 234, 60, 10.1016/j.ecolmodel.2011.06.012
Hölker, 2005, A spatiotemporal individual-based fish model to investigate emergent properties at the organismal and the population level, Ecol. Model., 186, 406, 10.1016/j.ecolmodel.2005.02.010
Huitu, 2003, Landscape effects on temporal and spatial properties of vole population fluctuations, Oecologia, 135, 209, 10.1007/s00442-002-1171-6
Huston, 1988, New computer models unify ecological theory, Bioscience, 38, 682, 10.2307/1310870
Jager, 2004, Spatial uncertainty and ecological models, Ecosystems, 7, 841, 10.1007/s10021-004-0025-y
Jakeman, 2006, Ten iterative steps in development and evaluation of environmental models, Environ. Model. Softw., 21, 602, 10.1016/j.envsoft.2006.01.004
Janssen, 1995, Calibration of process-oriented models, Ecol. Model., 83, 55, 10.1016/0304-3800(95)00084-9
Judson, 1994, The rise of the individual-based models in ecology, Trends Ecol. Evol., 9, 9, 10.1016/0169-5347(94)90225-9
Klepper, 1997, Multivariate aspects of model uncertainty analysis: tools für sensitvity analyis and calibration, Ecol. Model., 83, 55
Kubicek, 2012, Simulations of long-term community dynamics in coral reefs—how perturbations shape trajectories, PLoS Comput. Biol., 8, e1002791, 10.1371/journal.pcbi.1002791
Küppers, 2005, Validation of simulation: patterns in the social and natural sciences, J. Artif. Soc. Soc. Simul., 8
Krebs, 1996, Population cycles revisited, J. Mammal., 77, 8, 10.2307/1382705
Krueger, 2012, The role of expert opinion in environmental modelling, Environ. Model. Softw., 36, 4, 10.1016/j.envsoft.2012.01.011
Lammens, 2004, Effects of commercial fishery on the bream population and the e0pansion of Chara aspera in Lake Veluwe, Ecol. Model., 177, 233, 10.1016/j.ecolmodel.2003.10.002
Laperriére, 2009, Structural validation of an individual based model plague epidemic simulation, Ecol. Complex., 6, 102, 10.1016/j.ecocom.2008.08.001
Larocque, 2011, Development of the gap model ZELIG-CFS to predict the dynamics of North American mixed forest types with complex structures, Ecol. Model., 222, 2570, 10.1016/j.ecolmodel.2010.08.035
Latombe, 2011, Levels of emergence in individual based models: coping with scarctiy of data and pattern redundancy, Ecol. Model., 222, 1557, 10.1016/j.ecolmodel.2011.02.020
Lotka, 1925, Elements of physical biology
Ma, 2009, Incorporating behaviour into simple models of dispersal using the biological control agent Dicyphus hesperus, Ecol. Model., 220, 3271, 10.1016/j.ecolmodel.2009.08.022
Makler-Pick, 2010, Sensitivity analysis for complex ecological models—a new approach, Environ. Model. Softw., 26, 124, 10.1016/j.envsoft.2010.06.010
Manson, 2003, Validation and verification of multi-agent models for ecosystem management, 63
Marks, 2007, Validating simulation models: a general framework and four applied examples, Comput. Econ., 30, 265, 10.1007/s10614-007-9101-7
McIntosh, 2011, Preface: thematic issue on the assessment and evaluation of environmental models and software, Environ. Model. Softw., 26, 245, 10.1016/j.envsoft.2010.08.008
Mitro, 2001, Ecological model testing: verification, validation, or neither, Bull. Ecol. Soc. Am., 82, 235
Moss, 2008, Alternative approaches to the empirical validation of agent-based models, J. Artif. Soc. Soc. Simul., 11, 5
Müller, 2011, What are the general conditions, under which ecological models can be applied
Muthiga, 2008, Status of coral reefs in East Africa: Kenya, Tanzania, Mozambique and South Africa, 91
Nisbet, 1997, Primary-productivity gradients and short-term population dynamics in open systems, Ecol. Monogr., 67, 535, 10.1890/0012-9615(1997)067[0535:PPGAST]2.0.CO;2
Nyström, 2000, Coral reef disturbance and resilience in a human-dominated environment, Trends Ecol. Evol., 15, 413, 10.1016/S0169-5347(00)01948-0
Oreskes, 1994, Verification, validation, and confirmation of numerical models in the earth sciences, Science, 263, 641, 10.1126/science.263.5147.641
Pereira, A., Duarte, P., Reis, L., 2008. Agent-based ecological model calibration—on the edge of a new approach. In: Proceedings of the International Conference on Knowledge Engineering and Decision Support. ISEP, Porto, Portugal, 107–113.
Petrovskii, 2012, Computational ecology as an emerging science, Interface Focus, 2, 241, 10.1098/rsfs.2011.0083
Popp, 2007, Simulating the impacts of vegetation structure on the occurrence of a small mammalian carnivore in semi-arid savanna rangelands, Ecol. Model., 209, 136, 10.1016/j.ecolmodel.2007.06.017
Power, 1993, The predictive validation of ecological and environmental models, Ecol. Model., 68, 33, 10.1016/0304-3800(93)90106-3
Qudrat-Ullah, H., 2005. Structural validation of system dynamics and agent- based simulation models. In: Merkuryev, Y., Zobel, R., Kerckhoffs, E. (Eds.), Proceedings of the 19th European Conference on Modelling and Simulation. ECMS.
Railsback, 2011, Pattern-oriented modeling of bird foraging and pest control in coffee farms, Ecol. Model., 222, 3305, 10.1016/j.ecolmodel.2011.07.009
Ratz, 1995, Long-term spatial patterns created by fire: a model oriented towards boreal forests, Int. J. Wildland Fire, 5, 23, 10.1071/WF9950025
Reineking, 2006, Environmental variability and allocation trade-offs maintain species diversity in a process-based model of succulent plant communities, Ecol. Model., 199, 486, 10.1016/j.ecolmodel.2006.03.038
Reuter, 2005, Community processes as emergent properties: modelling multilevel interaction in small mammals communities, Ecol. Model., 186, 427, 10.1016/j.ecolmodel.2005.02.011
Reuter, 1999, Emerging properties on the individual level: modelling the reproduction phase of the European robin, Ecol. Model., 121, 199, 10.1016/S0304-3800(99)00078-2
Reuter, 2005, The concepts of emergent and collective properties individual-based models—summary and outlook of the Bornhöved case studies, Ecol. Model., 186, 489, 10.1016/j.ecolmodel.2005.02.014
Reuter, 2008, The ecological effect of phenotypic plasticity—analyzing complex interaction networks (COIN) with agent-based models, Ecol. Inform., 3, 35, 10.1016/j.ecoinf.2007.03.010
Reuter, 2010, Ecological hierarchies and self-organisation—pattern analysis, modelling and process integration across scales, Basic Appl. Ecol., 11, 572, 10.1016/j.baae.2010.08.002
Reuter, 2011, Individual-based models
Rupp, 2010, Development of an individual-based model to evaluate elk (Cervus elaphus nelsoni) movement and distribution patterns following the Cerro Grande Fire in north central New Mexico, USA, Ecol. Model., 221, 1605, 10.1016/j.ecolmodel.2010.03.014
Rykiel, 1996, Testing ecological models: the meaning of validation, Ecol. Model., 90, 229, 10.1016/0304-3800(95)00152-2
Saltelli, 2010, How to avoid a perfunctory sensitivity analysis, Environ. Model. Softw., 25, 1508, 10.1016/j.envsoft.2010.04.012
Sargent, R.G., 1998. Verification and validation of simulation models. In: Proceedings of the 1998 Winter Simulation Conference, pp. 121–130.
Sargent, R. G., 2003. Verification and validation of simulation models. In: Chick, S., Sanchez, P.J., Ferrin, E., Morrice, D.J. (Eds.), Proceedings of the Winter Simulation Conference, pp. 37–48.
Sargent, 2013, Verification and validation of simulation models, J. Simul., 7, 12, 10.1057/jos.2012.20
Srinivasan, 2010, Behavioral games involving a clever prey avoiding a clever predator: An individual-based model of dusky dolphins and killer whales, Ecol. Model., 221, 2687, 10.1016/j.ecolmodel.2010.07.010
Stenseth, 1999, Population cycles in voles and lemmings: density dependence and phase dependence in a stochastic world, Oikos, 87, 427, 10.2307/3546809
Sundell, 2004, Large-scale spatial dynamics of vole populations in Finland revealed by the breeding success of vole-eating avian predators, J. Anim. Ecol., 73, 167, 10.1111/j.1365-2656.2004.00795.x
Tang, 2012, Reprint of: parallel agent-based modeling of spatial opinion diffusion accelerated using graphics processing units, Ecol. Model., 229, 108, 10.1016/j.ecolmodel.2012.02.003
Tedeschi, 2006, Assessment of the adequacy of mathematical models, Agric. Syst., 89, 225, 10.1016/j.agsy.2005.11.004
Topping, 2012, Post-hoc pattern-oriented testing and tuning of an existing large model: lessons from the field vole, PLoS ONE, 7, e45872, 10.1371/journal.pone.0045872
Troitzsch, K., 2004. Validating simulation models. In: Horton, G. (Ed.), Proceedings of the 18th European Simulation Multiconference, SCS Europe.
Turing, 1950, Computing machinery and intelligence, Mind, 59, 433, 10.1093/mind/LIX.236.433
Urban, 1990
Volterra, V., 1926. Variazioni e fluttuazioni del numero d’individui in specie animali conviventi. Mem. Accad. Lincei ser.6, 2(3), 31–112. Translation by Mary Evelyn Wells: variations and fluctuations of the number of individuals in animal species living together, see 〈http://icesjms.oxfordjournals.org/cgi/reprint/3/1/3.pdf〉.
Wainwright, 2004
Wiegand, 2003, Using pattern-oriented modeling for revealing hidden information: a key for reconciling ecological theory and application, Oikos, 100, 209, 10.1034/j.1600-0706.2003.12027.x
Wiegand, 2004, Dealing with uncertainty in spatially explicit population models, Biodivers. Conserv., 13, 53, 10.1023/B:BIOC.0000004313.86836.ab
Windrum, 2007, Empirical validation of agent-based models: alternatives and prospects, J. Artif. Soc. Soc. Simul., 10
Yniguez, 2008, Allowing macroalgae growth forms to emerge: use of an agent-based model to understand the growth and spread of macroalgae in Florida coral reefs, with emphasis on Halimeda tuna, Ecol. Model., 216, 60, 10.1016/j.ecolmodel.2008.04.016
Zadereev, 2003, Zadereev individual-based model of the reproduction cycle of Moina macrocopa (Crustacea: Cladocera), Ecol. Model., 162, 15, 10.1016/S0304-3800(02)00348-4