Structural Insights into the Enzymatic Mechanism of the Pathogenic MAPK Phosphothreonine Lyase
Tài liệu tham khảo
Akira, 2006, Pathogen recognition and innate immunity, Cell, 124, 783, 10.1016/j.cell.2006.02.015
Arbibe, 2007, An injected bacterial effector targets chromatin access for transcription factor NF-kappaB to alter transcription of host genes involved in immune responses, Nat. Immunol., 8, 47, 10.1038/ni1423
Bebenek, 2001, 5′-Deoxyribose phosphate lyase activity of human DNA polymerase iota in vitro, Science, 291, 2156, 10.1126/science.1058386
Bellon, 1999, The structure of phosphorylated p38gamma is monomeric and reveals a conserved activation-loop conformation, Structure, 7, 1057, 10.1016/S0969-2126(99)80173-7
Brunger, 1998, Crystallography & NMR system: a new software suite for macromolecular structure determination, Acta Crystallogr. D Biol. Crystallogr., 54, 905, 10.1107/S0907444998003254
Canagarajah, 1997, Activation mechanism of the MAP kinase ERK2 by dual phosphorylation, Cell, 90, 859, 10.1016/S0092-8674(00)80351-7
1994, The CCP4 suite: programs for protein crystallography, Acta Crystallogr. D Biol. Crystallogr., 50, 760, 10.1107/S0907444994003112
Chang, 2002, Crystal structures of MAP kinase p38 complexed to the docking sites on its nuclear substrate MEF2A and activator MKK3b, Mol. Cell, 9, 1241, 10.1016/S1097-2765(02)00525-7
Chatterjee, 2005, Lacticin 481 synthetase phosphorylates its substrate during lantibiotic production, J. Am. Chem. Soc., 127, 15332, 10.1021/ja0543043
Cleland, 1982, The use of pH studies to determine chemical mechanisms of enzyme-catalyzed reactions, Methods Enzymol., 87, 390, 10.1016/S0076-6879(82)87024-9
Dong, 2002, MAP kinases in the immune response, Annu. Rev. Immunol., 20, 55, 10.1146/annurev.immunol.20.091301.131133
Doublie, 1997, Preparation of selenomethionyl proteins for phase determination, Methods Enzymol., 276, 523, 10.1016/S0076-6879(97)76075-0
Emsley, 2004, Coot: model-building tools for molecular graphics, Acta Crystallogr. D Biol. Crystallogr., 60, 2126, 10.1107/S0907444904019158
Farooq, 2001, Solution structure of ERK2 binding domain of MAPK phosphatase MKP-3: structural insights into MKP-3 activation by ERK2, Mol. Cell, 7, 387, 10.1016/S1097-2765(01)00186-1
Galan, 2006, Protein delivery into eukaryotic cells by type III secretion machines, Nature, 444, 567, 10.1038/nature05272
Garcia-Diaz, 2005, Structure-function studies of DNA polymerase lambda, DNA Repair (Amst.), 4, 1358, 10.1016/j.dnarep.2005.09.001
Garrido-Franco, 2002, Structure and function of threonine synthase from yeast, J. Biol. Chem., 277, 12396, 10.1074/jbc.M108734200
Guillen Schlippe, 2005, A twisted base? The role of arginine in enzyme-catalyzed proton abstractions, Arch. Biochem. Biophys., 433, 266, 10.1016/j.abb.2004.09.018
Heo, 2004, Structural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125, EMBO J., 23, 2185, 10.1038/sj.emboj.7600212
Holm, 1993, Protein structure comparison by alignment of distance matrices, J. Mol. Biol., 233, 123, 10.1006/jmbi.1993.1489
Humphrey, 1997, Chemical synthesis of natural product peptides: coupling methods for the incorporation of noncoded amino acids into peptides, Chem. Rev., 97, 2243, 10.1021/cr950005s
Jones, 1991, Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr. A, 47, 110, 10.1107/S0108767390010224
Knight, 2003, Phosphospecific proteolysis for mapping sites of protein phosphorylation, Nat. Biotechnol., 21, 1047, 10.1038/nbt863
Kramer, 2007, Yeast functional genomic screens lead to identification of a role for a bacterial effector in innate immunity regulation, PLoS Pathog., 3, e21, 10.1371/journal.ppat.0030021
Krissinel, 2004, Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions, Acta Crystallogr. D Biol. Crystallogr., 60, 2256, 10.1107/S0907444904026460
Kuipers, 1992, Engineering dehydrated amino acid residues in the antimicrobial peptide nisin, J. Biol. Chem., 267, 24340, 10.1016/S0021-9258(18)35771-5
Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Cryst., 26, 283, 10.1107/S0021889892009944
Li, 2007, The phosphothreonine lyase activity of a bacterial type III effector family, Science, 315, 1000, 10.1126/science.1138960
Linetsky, 2004, Dehydroalanine crosslinks in human lens, Exp. Eye Res., 79, 499, 10.1016/j.exer.2004.06.026
Mukherjee, 2006, Yersinia YopJ acetylates and inhibits kinase activation by blocking phosphorylation, Science, 312, 1211, 10.1126/science.1126867
Otwinowski, 1997, Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol., 276, 307, 10.1016/S0076-6879(97)76066-X
Patton, 2005, New developments in lantibiotic biosynthesis and mode of action, Curr. Opin. Microbiol., 8, 543, 10.1016/j.mib.2005.08.008
Pelletier, 1996, Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity, Biochemistry, 35, 12742, 10.1021/bi952955d
Shan, 2007, Intercepting host MAPK signaling cascades by bacterial type III effectors, Cell Host Microbe, 1, 167, 10.1016/j.chom.2007.04.008
Srivastava, 2004, Characterization of covalent multimers of crystallins in aging human lenses, J. Biol. Chem., 279, 10901, 10.1074/jbc.M308884200
Tanoue, 2002, Modular structure of a docking surface on MAPK phosphatases, J. Biol. Chem., 277, 22942, 10.1074/jbc.M202096200
Terwilliger, 2000, Maximum-likelihood density modification, Acta Crystallogr. D Biol. Crystallogr., 56, 965, 10.1107/S0907444900005072
Terwilliger, 2003, Automated main-chain model building by template matching and iterative fragment extension, Acta Crystallogr. D Biol. Crystallogr., 59, 38, 10.1107/S0907444902018036
Terwilliger, 1999, Automated MAD and MIR structure solution, Acta Crystallogr. D Biol. Crystallogr., 55, 849, 10.1107/S0907444999000839
Woodyer, 2005, Site-directed mutagenesis of active site residues of phosphite dehydrogenase, Biochemistry, 44, 4765, 10.1021/bi047868c
Worby, 2006, Microbiology. Bacteria seize control by acetylating host proteins, Science, 312, 1150, 10.1126/science.1128785
You, 2007, Mechanistic investigations of the dehydration reaction of lacticin 481 synthetase using site-directed mutagenesis, Biochemistry, 46, 5991, 10.1021/bi602663x
Zhang, 2007, A Pseudomonas syringae effector inactivates MAPKs to suppress PAMP-induced immunity in plants, Cell Host Microbe, 1, 175, 10.1016/j.chom.2007.03.006
Zhou, 2006, Docking interactions induce exposure of activation loop in the MAP kinase ERK2, Structure, 14, 1011, 10.1016/j.str.2006.04.006