Linking intra-seasonal variations in climate and tree-ring δ13C: A functional modelling approach

Agren G.I., Axelsson, B., 1980. A tree growth model. In: Persson, T. (Ed.), Structure and function of Northern coniferous forests, and ecosystem study. Ecological Bulletin, Stockholm, 525–536. Ashworth, 1993, Seasonal variations in soluble sugars and starch within woody stems of Cornus-Sericea L., Tree Physiology, 13, 379, 10.1093/treephys/13.4.379 Aubinet, 2000, Estimates of the annual net carbon and water exchange of forests: the EUROFLUX methodology, Advances in Ecological Research, 30, 113, 10.1016/S0065-2504(08)60018-5 Badeck, 2005, Post-photosynthetic fractionation of stable carbon isotopes between plant organs—a widespread phenomenon, Rapid Communications in Mass Spectrometry, 19, 1381, 10.1002/rcm.1912 Baldocchi, 2003, Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future, Global Change Biology, 9, 479, 10.1046/j.1365-2486.2003.00629.x Ball, 1987, A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions, vol. 4, 221 Bancal, 2002, Source-sink partitioning. Do we need Münch?, Journal of Experimental Botany, 53, 1919, 10.1093/jxb/erf037 Barbaroux, C., 2002. Analyse et modélisation des flux de carbone de peuplements forestiers pour la compréhension de la croissance des espèces feuillues Quercus petraea et Fagus sylvatica. Ph.D. Thesis. Univ. Paris XI (Orsay), 183 pp. Barbaroux, 2002, Contrasting distribution and seasonal dynamics of carbohydrate reserves in stem wood of adult ring-porous sessile oak and diffuse-porous beech trees, Tree Physiology, 22, 1201, 10.1093/treephys/22.17.1201 Barbour, 2002, Seasonal variation in 13C and 18O of cellulose from growth rings of Pinus radiata, Plant Cell Environment, 25, 1483, 10.1046/j.0016-8025.2002.00931.x Bary-Lenger, A., Nebout, J.P., 1993. Les chênes pédonculé et sessile en France et en Belgique. Editions du Perron, Alleur-Liège, 604 pp. Battaglia, 1998, Prediction of leaf area index in eucalypt plantations: effect of water stress and temperature, Tree Physiology, 18, 521, 10.1093/treephys/18.8-9.521 Bernacchi, 2002, Temperature response of mesophyll conductance. Implications for the determination of Rubisco enzyme kinetics and for limitations to photosynthesis in vivo, Plant Physiology, 130, 1992, 10.1104/pp.008250 Bowling, 2008, Carbon isotopes in terrestrial ecosystem pools and CO2 fluxes, New Phytologist, 178, 24, 10.1111/j.1469-8137.2007.02342.x Brandes, 2006, Short-term variation in the isotopic composition of organic matter allocated from the leaves to the stem of Pinus sylvestris: effects of photosynthetic and postphotosynthetic carbon isotope fractionation, Global Change Biology, 12, 1922, 10.1111/j.1365-2486.2006.01205.x Breda, 1996, Intra- and interannual variations of transpiration, leaf area index and radial growth of a sessile oak stand (Quercus petraea), Annals of Forest Science, 53, 521, 10.1051/forest:19960232 Breda, 2006, Temperate forest trees and stands under severe drought: a review of ecophysioogical responses, adaptation processes and lon-term consequences, Annals of Forest Science, 63, 625, 10.1051/forest:2006042 Breiman, 2001, Random forests, Machine Learning, 45, 5, 10.1023/A:1010933404324 Brugnoli, 1988, Correlation between the carbon isotope discrimination in leaf starch and sugars of C-3 plants and the ratio of intercellular and atmospheric partial pressures of carbon-dioxide, Plant Physiology, 88, 1418, 10.1104/pp.88.4.1418 Cai, 2008, Modelling environmental controls on ecosystem photosynthesis and the carbon isotope composition of ecosystem-respired CO2 in a coastal Douglas-fir forest, Plant Cell and Environment, 31, 435, 10.1111/j.1365-3040.2008.01773.x Chen, 2006, Modeling dynamics of stable carbon isotopic exchange between a boreal forest ecosystem and the atmosphere, Global Change Biology, 12, 1842, 10.1111/j.1365-2486.2006.01200.x Damesin, 2002, Stem and branch respiration of beech: from tree measurements to estimations at the stand level, New Phytologist, 153, 159, 10.1046/j.0028-646X.2001.00296.x Damesin, 2003, Carbon isotope composition of current-year shoots from Fagus sylvatica in relation to growth, respiration and use of reserves, Plant Cell and Environment, 26, 207, 10.1046/j.1365-3040.2003.00951.x Daudet, 2002, Generalized Münch coupling between sugar and water fluxes for modelling carbon allocation as affected by water status, Journal of Theoretical Biology, 214, 481, 10.1006/jtbi.2001.2473 Deslauriers, 2003, Cellular phenology of annual ring formation of Abies balsamea in the Quebec boreal forest (Canada), Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, 33, 190, 10.1139/x02-178 Donaldson, 2001, Lignification and lignin topochemistry—an ultrastructural view, Phytochemistry, 57, 859, 10.1016/S0031-9422(01)00049-8 Drexhage, 1999, Development of structural root architecture and allometry of Quercus petraea, Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, 29, 600, 10.1139/x99-027 Dufrêne, 2005, Modelling carbon and water cycles in a beech forest Part I: model description and uncertainty analysis on modelled NEE, Ecological Modelling, 185, 407, 10.1016/j.ecolmodel.2005.01.004 Dupouey, 1993, Modelling carbon-isotope fractionation in tree-rings based on effective evapotranspiration and soil-water status, Plant Cell and Environment, 16, 939, 10.1111/j.1365-3040.1993.tb00517.x Duranceau, 1999, delta C-13 of CO2 respired in the dark in relation to delta C-13 of leaf carbohydrates in Phaseolus vulgaris L-under progressive drought, Plant Cell and Environment, 22, 515, 10.1046/j.1365-3040.1999.00420.x Eglin, 2008, Biochemical composition is not the main factor influencing carbon isotope composition of tree-rings, Tree Physiology, 28, 1619, 10.1093/treephys/28.11.1619 Escobar-Gutierrez, 1998, Modelling of allocation and balance of carbon in walnut (Juglans regia L.) seedlings during heterotrophy-autotrophy transition, Journal of Theoretical Biology, 194, 29, 10.1006/jtbi.1998.0740 Farquhar, 1980, A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78, 10.1007/BF00386231 Farquhar, 1982, On the relationship between carbon isotope discrimination and the internal carbon dioxide concentration in leaves, Australian Journal of Plant Physiology, 9, 121, 10.1071/PP9820121 Farquhar, 1989, Carbon isotope discrimination and photosynthesis, Annual Review of Plant Physiology and Plant Molecular Biology, 40, 503, 10.1146/annurev.pp.40.060189.002443 February, 1999, Declining trend in the C-13/C-12 ratio of atmospheric carbon dioxide from tree rings of South African Widdringtonia cedarbergensis, Quaternary Research, 52, 229, 10.1006/qres.1999.2057 Gessler, 2007, delta C-13 of organic matter transported from the leaves to the roots in Eucalyptus delegatensis: short-term variations and relation to respired CO2, Functional Plant Biology, 34, 692, 10.1071/FP07064 Ghashghaie, 2003, Carbon isotope fractionation during dark respiration and photorespiration in C3 plants, Phytochemistry Reviews, 2, 145, 10.1023/B:PHYT.0000004326.00711.ca Gillon, 1997, The influence of (photo)respiration on carbon isotope discrimination in plants, Plant Cell Environment, 20, 1217, 10.1046/j.1365-3040.1997.d01-24.x Gleixner, 1993, Correlations between the C-13 content of primary and secondary plant-products in different cell compartments and that in decomposing basidiomycetes, Plant Physiology, 102, 1287, 10.1104/pp.102.4.1287 Hammel, 1968, Measurements of turgor pressure and its gradient in the phloem of oak, Plant Physiology, 43, 1042, 10.1104/pp.43.7.1042 Helle, 2004, Beyond CO2-fixation by Rubisco—an interpretation of C-13/C-12 variations in tree rings from novel intra-seasonal studies on broad-leaf trees, Plant Cell and Environment, 27, 367, 10.1111/j.0016-8025.2003.01159.x Hemming, 2001, Modeling tree-ring δ13C, Dendrochronologia, 19, 23 Ho, 1988, Metabolism and compartmentation of imported sugars in sink organs in relation to sink strength, Annual Review of Plant Physiology and Plant Molecular Biology, 39, 355, 10.1146/annurev.pp.39.060188.002035 Hoch, 2003, Non-structural carbon compounds in temperate forest trees, Plant Cell and Environment, 26, 1067, 10.1046/j.0016-8025.2003.01032.x Höllta, 2006, Modeling xylem and phloem water flows in trees according to cohesion theory and Münch hypothesis, Trees-Structure and Function, 20, 67, 10.1007/s00468-005-0014-6 Kagawa, 2006, Seasonal course of translocation, storage and remobilization of C-13 pulse-labeled photoassimilate in naturally growing Larix gmelinii saplings, New Phytologist, 171, 793, 10.1111/j.1469-8137.2006.01780.x Keel, 2007, Rapid mixing between old and new C pools in the canopy of mature forest trees, Plant Cell and Environment, 30, 963, 10.1111/j.1365-3040.2007.01688.x Kodama, 2008, Temporal dynamic of the carbon isotope composition in a Pinus sylvestris stand: from newly assimilated organic carbon to respired carbon dioxyde, Oecologia, 156, 737, 10.1007/s00442-008-1030-1 Lacointe, 1993, Mobilization of carbon reserves in young walnut trees, Acta Botanica Gallica, 140, 435, 10.1080/12538078.1993.10515618 Lacointe, 2000, Carbon allocation among tree organs: a review of basic processes and representation in functional-structural tree models, Annals of Forest Science, 57, 521, 10.1051/forest:2000139 Lacointe, 2004, Testing the branch autonomy theory: a C-13/C-14 double-labelling experiment on differentially shaded branches, Plant Cell and Environment, 27, 1159, 10.1111/j.1365-3040.2004.01221.x Lalonde, 2003, Phloem loading and unloading of sugars and amino acids, Plant Cell and Environment, 26, 37, 10.1046/j.1365-3040.2003.00847.x Le Hir, 2005, Sucrose synthase expression pattern in the rythmically growing shoot of common oak (Quercus robur L.), Annals of Forest Science, 62, 585, 10.1051/forest:2005051 Le Maire, G., 2005. Détermination du bilan de carbone de la forêt de Fontainebleau: apport de la télédétection pour la spatialisation des paramètres d’entrée. Ph.D. Thesis. Univ. Paris XI (Orsay), 201 pp. Le Roux, 2001, Spatial distribution of leaf water-use efficiency and carbon isotope discrimination within an isolated tree crown, Plant Cell and Environment, 24, 1021, 10.1046/j.0016-8025.2001.00756.x Leavitt, 1986, Stable-carbon isotope variability in tree foliage and wood, Ecology, 67, 1002, 10.2307/1939823 Leavitt, 1992, Seasonal, 13C/12C changes in tree-rings: species and site coherence, and a possible drought influence, Canadian Journal of Forest Research, 23, 210, 10.1139/x93-028 Leavitt, 2002, Prospects for reconstruction of seasonal environment from tree-ring delta C-13: baseline findings from the Great Lakes area, USA, Chemical Geology, 192, 47, 10.1016/S0009-2541(02)00161-4 Livingston, 1998, Nitrogen allocation and carbon isotope fractionation in relation to intercepted radiation and position in a young Pinus radiata D. Don tree, Plant Cell and Environment, 21, 795, 10.1046/j.1365-3040.1998.00314.x Loader, 1995, High-resolution stable isotope analysis of tree rings: implications of ‘microdendroclimatology’ for palaeoenvironmental research, The Holocene, 5, 457, 10.1177/095968369500500408 Loader, 2003, Comparison of stable carbon isotope ratios in the whole wood, cellulose and lignin of oak tree-rings, Palaeogeography Palaeoclimatology Palaeoecology, 196, 395, 10.1016/S0031-0182(03)00466-8 Maunoury, 2007, Seasonal, daily and diurnal variations in the stable carbon isotope composition of carbon dioxide respired by tree trunks in a deciduous oak forest, Oecologia, 151, 268, 10.1007/s00442-006-0592-z McCarroll, 2004, Stable isotopes in tree rings, Quaternary Science Reviews, 23, 771, 10.1016/j.quascirev.2003.06.017 McNevin, 2007, Differences in carbon isotope discrimination of three variants of D-Ribulose-1, 5-bisphosphate carboxylase/oxygenase reflect differences in their catalytic mechanisms, Journal of Biological Chemistry, 282, 36068, 10.1074/jbc.M706274200 Medlyn, 2001, Stomatal conductance of forest species after long-term exposure to elevated CO2 concentration: a synthesis, New Phytologist, 149, 247, 10.1046/j.1469-8137.2001.00028.x Michelot, A., Eglin, T., Dufrêne, E., Lelarge-Trouverie, C., Damesin, C., Comparison of seasonal variations in water-use efficiency calculated from the carbon isotope composition of tree rings and flux data in a temperate forest. Plant, Cell and Environment, Submitted for publication. Moing, 1994, Modeling carbon export out of mature peach leaves, Plant Physiology, 106, 591, 10.1104/pp.106.2.591 Münch, 1930 Niinemets, 1999, Energy requirement for foliage formation is not constant along canopy light gradients in temperate deciduous trees, New Phytologist, 141, 459, 10.1046/j.1469-8137.1999.00361.x Ogée, 2009, A single-substrate model to interpret intra-annual stable isotope signals in tree-ring cellulose, Plant Cell and Environment, 32, 1071, 10.1111/j.1365-3040.2009.01989.x Oleary, 1984, Measurement of the isotope fractionation associated with diffusion of carbon-dioxide in aqueous-solution, Journal of Physical Chemistry, 88, 823, 10.1021/j150648a041 Ogle, 1994, High-resolution δ13C measurements of oak show a previously unobserved spring depletion, Geophysical Research Letters, 21, 2373, 10.1029/94GL02484 Panek, 1997, Stable carbon isotopes as indicators of limitations to forest growth imposed by climate stress, Ecological Applications, 7, 854, 10.1890/1051-0761(1997)007[0854:SCIAIO]2.0.CO;2 Papale, 2006, Towards a standardized processing of net ecosystem exchange measured with eddy covariance technique: algorithms and uncertainty estimation, Biogeosciences, 34, 571, 10.5194/bg-3-571-2006 Pappenberger, 2006, Sensitivity analysis based on regional splits and regression trees (SARS-RT), Environmental Modelling & Software, 21, 976, 10.1016/j.envsoft.2005.04.010 Piel, C., 2002. Diffusion du CO2 dans le mésophylle des plantes à métabolisme en C3. Ph.D. Thesis. Univ. Paris XI (Orsay), 132 pp. Porté, 2001, Seasonal and interannual variations in carbon isotope discrimination in a maritime pine (Pinus pinaster) stand assessed from the isotopic composition of cellulose in annual rings, Tree Physiology, 21, 861, 10.1093/treephys/21.12-13.861 Press, 1992 Raffalli-Delerce, 2004, Reconstruction of summer droughts using tree-ring cellulose isotopes: a calibration study with living oaks from Brittany (western France), Tellus Series B-Chemical and Physical Meteorology, 56, 160, 10.1111/j.1600-0889.2004.00086.x Ramesh, 1985, Dendroclimatological implications of isotope coherence in trees from Kashmir Valley, India, Nature, 317, 802, 10.1038/317802a0 Reichstein, 2005, On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm, Global Change Biology, 11, 1424, 10.1111/j.1365-2486.2005.001002.x Roberts, 2003, Plasmodesmata and the control of symplastic transport, Plant Cell and Environment, 26, 103, 10.1046/j.1365-3040.2003.00950.x Samuels, 2006, The cell biology of wood formation: from cambial divisions to mature secondary xylem, Canadian Journal of Botany-Revue Canadienne De Botanique, 84, 631, 10.1139/b06-065 Saurer, 1997, Stable carbon isotopes in tree rings of beech: climatic versus site-related influences, Trees-Structure and Function, 11, 291, 10.1007/s004680050087 Sauter, 1988, Temperature-induced changes in starch and sugars in the stem of Populus×Canadensis-Robusta, Journal of Plant Physiology, 132, 608, 10.1016/S0176-1617(88)80263-3 Scartazza, 2004, Comparisons of delta C-13 of photosynthetic products and ecosystem respiratory CO2 and their response to seasonal climate variability, Oecologia, 140, 340, 10.1007/s00442-004-1588-1 Sheehy, 1995, Calculation of translocation coefficients from phloem anatomy for use in crop models, Annals of Botany, 76, 263, 10.1006/anbo.1995.1095 Suits, 2005, Simulation of carbon isotope discrimination of the terrestrial biosphere, Global Biogeochemical Cycles, 19, GB1017, 10.1029/2003GB002141 Tans, 1980, Past atmospheric CO2 levels and the, 13C/12C ratios in tree rings, Tellus, 32, 268, 10.1111/j.2153-3490.1980.tb00954.x Tcherkez, 2003, Metabolic origin of carbon isotope composition of leaf dark-respired CO2 in French bean, Plant Physiology, 131, 237, 10.1104/pp.013078 Thompson, 2003, Application of a single-solute non-steady-state phloem model to the study of long-distance assimilate transport, Journal of Theoretical Biology, 220, 419, 10.1006/jtbi.2003.3115 Vallet, 2006, Development of total aboveground volume equations for seven important forest tree species in France, Forest Ecology and Management, 229, 98, 10.1016/j.foreco.2006.03.013 Weigl, 2008, Characteristics of radial growth and stable isotopes in a single oak tree to be used in climate studies, Science of the Total Environment, 393, 154, 10.1016/j.scitotenv.2007.12.016 West, 1999, A general model for the structure and allometry of plant vascular systems, Nature, 400, 664, 10.1038/23251