Adams, 2010, PHENIX: a comprehensive Python-based system for macromolecular structure solution, Acta Crystallogr. Sect. D Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925
Axelrod, 2002, X-ray structure determination of the cytochrome c2: reaction center electron transfer complex from rhodobacter sphaeroides, J. Mol. Biol., 319, 501, 10.1016/S0022-2836(02)00168-7
Bai, 2015, Sampling the conformational space of the catalytic subunit of human g-secretase, Elife, 4, 1, 10.7554/eLife.11182
Barth, 1998, Ferredoxin reduction by photosystem I from Synechocystis sp. PCC 6803: toward an understanding of the respective roles of subunits PsaD and PsaE in ferredoxin binding, Biochemistry, 37, 16233, 10.1021/bi981379t
Bhat, 2017, Mechanism of enzyme repair by the AAA+ chaperone rubisco activase, Mol. Cell., 67, 744, 10.1016/j.molcel.2017.07.004
Cao, 2020, Structural basis for energy and electron transfer of the photosystem I–IsiA–flavodoxin supercomplex, Nat. Plants., 6, 167, 10.1038/s41477-020-0593-7
Ciesielski, 2010, Photosystem I–Based biohybrid photoelectrochemical cells, Bioresour. Technol., 101, 3047, 10.1016/j.biortech.2009.12.045
Crowley, 2003, Close encounters of the transient kind: protein interactions in the photosynthetic redox chain investigated by NMR spectroscopy, Acc. Chem. Res., 36, 723, 10.1021/ar0200955
Emsley, 2010, Features and development of coot, Acta Crystallogr. Sect. D Biol. Crystallogr., 66, 486, 10.1107/S0907444910007493
Erman, 2002, Yeast cytochrome c peroxidase: mechanistic studies via protein engineering, Biochim. Biophys. Acta Protein Struct. Mol. Enzymol., 1597, 193, 10.1016/S0167-4838(02)00317-5
Feoktystov, 2015, KWS-1 high-resolution small-angle neutron scattering instrument at JCNS: current state, J. Appl. Crystallogr., 48, 61, 10.1107/S1600576714025977
Friebe, 2017, Photosynthetic reaction center-based biophotovoltaics, Curr. Opin. Electrochem., 5, 126, 10.1016/j.coelec.2017.08.001
Gisriel, 2020, The structure of Photosystem I acclimated to far-red light illuminates an ecologically important acclimation process in photosynthesis, Sci. Adv., 6, 10.1126/sciadv.aay6415
Golub, 2017, Solution structure of monomeric and trimeric photosystem I of Thermosynechococcus elongatus investigated by small-angle X-ray scattering, Photosynth. Res., 133, 163, 10.1007/s11120-017-0342-6
Hatanaka, 1993, Small subunits of Photosystem I reaction center complexes from Synechococcus elongatus. I. Is the psaF gene product required for oxidation of cytochrome c-553?, BBA - Bioenerg, 1141, 45, 10.1016/0005-2728(93)90187-K
Hervás, 1992, A comparative laser-flash absorption spectroscopy study of algal plastocyanin and cytochrome c552 photooxidation by photosystem I particles from spinach, Eur. J. Biochem., 203, 115, 10.1111/j.1432-1033.1992.tb19835.x
Hervás, 2005, Cyanobacterial photosystem I lacks specificity in its interaction with cytochrome c 6 electron donors, Photosynth. Res., 83, 329, 10.1007/s11120-005-1002-9
Hippler, 1998, The N-terminal domain of PsaF: precise recognition site for binding and fast electron transfer from cytochrome c6 and plastocyanin to photosystem I of Chlamydomonas reinhardtii, Proc. Natl. Acad. Sci., 95, 7339, 10.1073/pnas.95.13.7339
Huiskonen, 2018, Image processing for cryogenic transmission electron microscopy of symmetry-mismatched complexes, Biosci. Rep., 38, 10.1042/BSR20170203
Ilca, 2015, Localized reconstruction of subunits from electron cryomicroscopy images of macromolecular complexes, Nat. Commun., 6, 8843, 10.1038/ncomms9843
Jo, 2008, CHARMM-GUI: a web-based graphical user interface for CHARMM, J. Comput. Chem., 29, 1859, 10.1002/jcc.20945
Jordan, 2001, X-ray crystallographic structure analysis of cyanobacterial photosystem I at 2.5 A resolution, Sci. Access, 3
Kang, 2017, Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex, Elife, 6, 10.7554/eLife.25478
Kastritis, 2011, A structure-based benchmark for protein–protein binding affinity, Protein Sci., 20, 482, 10.1002/pro.580
Kedrov, 2016, Structural dynamics of the YidC:ribosome complex during membrane protein biogenesis, Cell Rep., 17, 2943, 10.1016/j.celrep.2016.11.059
Kölsch, 2018, Insights into the binding behavior of native and non-native cytochromes to Photosystem I from Thermosynechococcus elongatus, J. Biol. Chem., 293, 9090, 10.1074/jbc.RA117.000953
Konarev, 2003, PRIMUS: a Windows PC-based system for small-angle scattering data analysis, J. Appl. Crystallogr., 36, 1277, 10.1107/S0021889803012779
Kubota-Kawai, 2018, X-ray structure of an asymmetrical trimeric ferredoxin–photosystem I complex, Nat. Plants, 4, 218, 10.1038/s41477-018-0130-0
Lyumkis, 2013, Likelihood-based classification of cryo-EM images using FREALIGN, J. Struct. Biol., 183, 377, 10.1016/j.jsb.2013.07.005
MacGregor-Chatwin, 2017, Lateral segregation of photosystem I in cyanobacterial thylakoids, Plant Cell, 29, 1119, 10.1105/tpc.17.00071
Malavath, 2018, Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis, Biochim. Biophys. Acta Bioenerg., 1859, 645, 10.1016/j.bbabio.2018.02.002
Mazor, 2017, Structure of the plant photosystem I supercomplex at 2.6 Å resolution, Nat. Plants, 3, 17014, 10.1038/nplants.2017.14
Moser, 1988, Cytochrome c and c2 binding dynamics and electron transfer with photosynthetic reaction center protein and other integral membrane redox proteins, Biochemistry, 27, 2450, 10.1021/bi00407a031
Mueller-Cajar, 2011, Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase, Nature, 479, 194, 10.1038/nature10568
Müh, 2005, Extinction coefficients and critical solubilisation concentrations of photosystems I and II from Thermosynechococcus elongatus, Biochim. Biophys. Acta Bioenerg., 1708, 219, 10.1016/j.bbabio.2005.03.005
Nguyen, 2015, The architecture of the spliceosomal U4/U6.U5 tri-snRNP, Nature, 523, 47, 10.1038/nature14548
Pan, 2018, Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II, Science (80-. ), 360, 1109, 10.1126/science.aat1156
Pan, 2020, Structural basis for electron transport mechanism of complex I-like photosynthetic NAD(P)H dehydrogenase, Nat. Commun., 11, 610, 10.1038/s41467-020-14456-0
Passos, 2017, Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome, Science, 355, 89, 10.1126/science.aah5163
Pelletier, 1992, Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c, Science (80-. ), 258, 1748, 10.1126/science.1334573
Penczek, 2006, A method of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation, J. Struct. Biol., 154, 184, 10.1016/j.jsb.2005.12.013
Petoukhov, 2012, New developments in the ATSAS program package for small-angle scattering data analysis, J. Appl. Crystallogr., 45, 342, 10.1107/S0021889812007662
Pettersen, 2004, UCSF Chimera - a visualization system for exploratory research and analysis, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084
Qiu, 2018, Structural basis for neutralization of Japanese encephalitis virus by two potent therapeutic antibodies, Nat. Microbiol., 3, 287, 10.1038/s41564-017-0099-x
Rohou, 2015, CTFFIND4: fast and accurate defocus estimation from electron micrographs, J. Struct. Biol., 192, 216, 10.1016/j.jsb.2015.08.008
Scheres, 2010, Classification of structural heterogeneity by maximum-likelihood methods, 295, 10.1016/S0076-6879(10)82012-9
Scheres, 2016
Schrodinger, 2015
Sétif, 2002, The ferredoxin docking site of photosystem I, Biochim. Biophys. Acta Bioenerg., 1555, 204, 10.1016/S0005-2728(02)00279-7
Sommer, 2002, The luminal helix l of PsaB is essential for recognition of plastocyanin or cytochrome c6 and fast electron transfer to photosystem I in Chlamydomonas reinhardtii, J. Biol. Chem., 277, 6573, 10.1074/jbc.M110633200
Stieger, 2016, Biohybrid architectures for efficient light-to-current conversion based on photosystem I within scalable 3D mesoporous electrodes, J. Mater. Chem. A., 4, 17009, 10.1039/C6TA07141D
Su, 2019, Antenna arrangement and energy transfer pathways of a green algal photosystem-I–LHCI supercomplex, Nat. Plants., 5, 273, 10.1038/s41477-019-0380-5
Suga, 2019, Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I, Nat. Plants, 5, 626, 10.1038/s41477-019-0438-4
Svergun, 1992, Determination of the regularization parameter in indirect-transform methods using perceptual criteria, J. Appl. Crystallogr., 25, 495, 10.1107/S0021889892001663
Svergun, 1995, CRYSOL– a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates, J. Appl. Crystallogr., 28, 768, 10.1107/S0021889895007047
Tiede, 2000, Solution structure of a biological bimolecular electron transfer complex: characterization of the photosynthetic reaction center-cytochrome c2 protein complex by small angle neutron scattering, J. Appl. Crystallogr., 33, 560, 10.1107/S0021889800099891
Toporik, 2019, The structure of the stress-induced photosystem I–IsiA antenna supercomplex, Nat. Struct. Mol. Biol., 26, 443, 10.1038/s41594-019-0228-8
Wang, 2019, Rubisco condensate formation by CcmM in β-carboxysome biogenesis, Nature, 566, 131, 10.1038/s41586-019-0880-5
Zhao, 2018, Light-induced formation of partially reduced oxygen species limits the lifetime of photosystem 1-based biocathodes, Nat. Commun., 9, 1
Zheng, 2017, MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy, Nat. Methods, 14, 331, 10.1038/nmeth.4193
Zhou, 2015, Atomic structure of the apoptosome: mechanism of cytochrome c- and dATP-mediated activation of Apaf-1, Genes Dev., 29, 2349, 10.1101/gad.272278.115
Zivanov, 2018, New tools for automated high-resolution cryo-EM structure determination in RELION-3, Elife, 7, 10.7554/eLife.42166