Full-length genome sequence and genetic relationship of two paramyxoviruses isolated from bat and pigs in the Americas
Archives of Virology - 2007
Tóm tắt
Mapuera virus (MPRV) was isolated from a fruit bat in Brazil in 1979, but its host range and disease-causing potential are unknown. Porcine rubulavirus (PoRV) was identified as the aetiological agent of disease outbreaks in pigs in Mexico during early 1980s, but the origin of PoRV remains elusive. In this study, the completed genome sequence of MPRV was determined, and the complete genome sequence of PoRV was assembled from previously published protein-coding genes and the non-coding genome regions determined from this study. Comparison of sequence and genome organization indicated that PoRV is more closely related to MPRV than to any other members of the genus Rubulavirus. In the P gene coding region of both viruses, there is an ORF located at the 5′ end of the P gene overlapping with the P protein coding region, similar to the C protein ORF present in most viruses of the subfamily Paramyxovirinae, but absent in other known rubulaviruses. Based on these findings, we hypothesise that PoRV may also originate from bats, and spillover events from bats to pigs, either directly or via an intermediate host, were responsible for the sporadic disease outbreaks observed in Mexico.
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Tài liệu tham khảo
M Berg AC Bergvall M Svenda A Sundqvist J Moreno-López T Linné (1997) ArticleTitleAnalysis of the fusion protein gene of the porcine rubulavirus LPMV: comparative analysis of paramyxovirus F proteins Virus Genes 14 55–61 Occurrence Handle9208455 Occurrence Handle10.1023/A:1007987407250 Occurrence Handle1:CAS:528:DyaK2sXktFShtr4%3D
M Berg B Hjertner J Moreno-López T Linné (1992) ArticleTitleThe P gene of the porcine paramyxovirus LPMV encodes three possible polypeptides P, V and C: the P protein mRNA is edited J Gen Virol 73 1195–1200 Occurrence Handle1588322 Occurrence Handle1:CAS:528:DyaK3sXit1ynt7o%3D
M Berg A Sundqvist J Moreno-López T Linné (1991) ArticleTitleIdentification of the porcine paramyxovirus LPMV matrix protein gene: comparative sequence analysis with other paramyxoviruses J Gen Virol 72 1045–1050 Occurrence Handle2033388 Occurrence Handle1:CAS:528:DyaK38Xht1ajtbY%3D
TR Bowden DB Boyle (2005) ArticleTitleCompletion of the full-length genome sequence of Menangle virus: characterisation of the polymerase gene and genomic 5′ trailer region Arch Virol 150 2125–2137 Occurrence Handle15906105 Occurrence Handle10.1007/s00705-005-0552-7 Occurrence Handle1:CAS:528:DC%2BD2MXhtVajsLbK
TR Bowden M Westenberg L-F Wang BT Eaton DB Boyle (2001) ArticleTitleMolecular characterization of Menangle virus, a novel paramyxovirus which infects pigs, fruit bats, and humans Virology 283 358–373 Occurrence Handle11336561 Occurrence Handle10.1006/viro.2001.0893 Occurrence Handle1:CAS:528:DC%2BD3MXjt1Wgtb0%3D
KN Bossart LF Wang BT Eaton CC Broder (2001) ArticleTitleFunctional expression and membrane fusion tropism of the envelope glycoproteins of Hendra virus Virology 10 121–135 Occurrence Handle10.1006/viro.2001.1158 Occurrence Handle1:CAS:528:DC%2BD3MXot12msr0%3D
MS Chadha JA Comer L Lowe PA Rota PE Rollin WJ Bellini TG Ksiazek A Mishra (2006) ArticleTitleNipah virus-associated encephalitis outbreak, Siliguri, India Emerg Infect Dis 12 235–240 Occurrence Handle16494748
K Chant R Chan M Smith DE Dwyer P Kirkland (1998) ArticleTitleProbable human infection with a newly described virus in the family Paramyxoviridae Emerg Infect Dis 4 273–275 Occurrence Handle9621198 Occurrence Handle1:STN:280:DyaK1c3osVaiug%3D%3D Occurrence Handle10.3201/eid0402.980215
KB Chua WJ Bellini PA Rota BA Harcourt A amin SK Lam TR Ksiazek PE Rollin SR Zaki WJ Shieh CS Goldsmith DJ Gubler JT Roehrig B Eaton AR Gould J Olson H Field P Daniels AE Ling CJ Peters LJ Anderson WJ Mahy (2000) ArticleTitleNipah virus: a recently emergent deadly paramyxovirus Science 288 1432–1435 Occurrence Handle10827955 Occurrence Handle10.1126/science.288.5470.1432 Occurrence Handle1:CAS:528:DC%2BD3cXjslGqsrw%3D
KB Chua L-F Wang SK Lam G Crameri M Yu T Wise D Boyle AD Hyatt BT Eaton (2001) ArticleTitleTioman virus, a novel paramyxovirus isolated from fruit bats in Malaysia Virology 283 215–229 Occurrence Handle11336547 Occurrence Handle10.1006/viro.2000.0882 Occurrence Handle1:CAS:528:DC%2BD3MXjt1Wgt7c%3D
KB Chua L-F Wang SK Lam BT Eaton (2002) ArticleTitleFull length genome sequence of Tioman virus, a novel paramyxovirus in the genus Rubulavirus isolated from fruit bats in Malaysia Arch Virol 147 1323–1348 Occurrence Handle12111411 Occurrence Handle10.1007/s00705-002-0815-5 Occurrence Handle1:CAS:528:DC%2BD38XmvFCrtbw%3D
JH Epstein HE Field S Luby JR Pulliam P Daszak (2006) ArticleTitleNipah virus: impact, origins, and causes of emergence Curr Infect Dis Rep 8 59–65 Occurrence Handle16448602 Occurrence Handle10.1007/s11908-006-0036-2
Field HE, Breed AC, Shield J, Hedlefs RM, Pittard K, Pott B, Summers PM (2007) Epidemiological perspectives on Hendra virus infection in horses and flying foxes. Aust Vet J (in press)
GW Henderson C Laird E Dermott BK Rima (1995) ArticleTitleCharacterization of Mapuera virus: structure, proteins and nucleotide sequence of the gene encoding the nucleocapsid protein J Gen Virol 76 2509–2518 Occurrence Handle7595354 Occurrence Handle1:CAS:528:DyaK2MXosVGltL4%3D
FB Hollinger KM Pavri (1971) ArticleTitleBat parainfluenza virus. Immunological, chemical, and physical properties Am J Trop Med Hyg 20 131–138 Occurrence Handle4327914 Occurrence Handle1:STN:280:DyaE3M3otF2ktA%3D%3D
M Hosaka M Nagahama WS Kim T Watanabe K Hatsuzawa J Ikemizu K Murakami K Nakayama (1991) ArticleTitleArg-X-Lys/Arg-Arg motif as a signal for precursor cleavage catalyzed by furin within the constitutive secretory pathway J Biol Chem 266 12127–12130 Occurrence Handle1905715 Occurrence Handle1:CAS:528:DyaK3MXlsFGltLk%3D
VP Hsu MJ Hossain UD Parashar MM Ali TG Ksiazek I Kuzmin M Niezgoda C Rupprecht J Bresee RF Breiman (2004) ArticleTitleNipah virus encephalitis reemergence, Bangladesh Emerg Infect Dis 10 2082–2087 Occurrence Handle15663842
PJM Jack DB Boyle BT Eaton L-F Wang (2005) ArticleTitleThe complete genome sequence of J virus reveals a unique genome structure in the family Paramyxoviridae J Virol 79 10690–10700 Occurrence Handle16051861 Occurrence Handle10.1128/JVI.79.16.10690-10700.2005 Occurrence Handle1:CAS:528:DC%2BD2MXntFCqs7Y%3D
N Karabatsos (1985) International Catalogue of Arboviruses EditionNumber3 American Society of Tropical Medicine and Hygiene San Antonio, Texas
D Kolakofsky T Pelet D Garcin S Hausmann J Curran L Roux (1998) ArticleTitleParamyxovirus RNA synthesis and the requirement for hexamer genome length: the rule of six revisited J Virol 72 891–899 Occurrence Handle9444980 Occurrence Handle1:CAS:528:DyaK1cXlt1CmsA%3D%3D
S Kumar K Tamura M Nei (2004) ArticleTitleMEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150–163 Occurrence Handle15260895 Occurrence Handle10.1093/bib/5.2.150 Occurrence Handle1:CAS:528:DC%2BD2cXntFGqu7s%3D
Lamb RA, Collins PL, Kolakofsky D, Melero JA, Nagai Y, Oldstone MBA, Pringle CR, Rima BK (2005) Family Paramyxoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: 8th Report of the International Comittee on Taxonomy of Viruses. Elsevier Acedemic Press, San Diego, pp 655–668
Lamb RA, Kolakofsky D (2001) Paramyxoviridae: the viruses and their replication. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (eds) Lippincott Williams & Wilkins, Philadelphia, pp 305–1340
JP Langedijk FJ Daus JT van Oirschot (1997) ArticleTitleSequence and structure alignment of Paramyxoviridae attachment proteins and discovery of enzymatic activity for a morbillivirus hemagglutinin J Virol 71 6155–6167 Occurrence Handle9223510 Occurrence Handle1:CAS:528:DyaK2sXks1Gnsbo%3D
SK Lau PC Woo KS Li Y Huang HW Tsoi BH Wong SS Wong SY Leung KH Chan KY Yuen (2005) ArticleTitleSevere acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats Proc Natl Acad Sci USA 102 14040–14045 Occurrence Handle16169905 Occurrence Handle10.1073/pnas.0506735102 Occurrence Handle1:CAS:528:DC%2BD2MXhtVOqsbbO
EM Leroy B Kumulungui X Pourrut P Rouquet A Hassanin P Yaba A Delicat JT Paweska JP Gonzalez R Swanepoel (2005) ArticleTitleFruit bats as reservoirs of Ebola virus Nature 438 575–576 Occurrence Handle16319873 Occurrence Handle10.1038/438575a Occurrence Handle1:CAS:528:DC%2BD2MXht1GqsrfL
W Li Z Shi M Yu W Ren C Smith JH Epstein H Wang G Crameri Z Hu H Zhang J Zhang J McEachern H Field P Daszak BT Eaton S Zhang L-F Wang (2005) ArticleTitleBats are natural reservoirs of SARS-like coronaviruses Science 310 676–679 Occurrence Handle16195424 Occurrence Handle10.1126/science.1118391 Occurrence Handle1:CAS:528:DC%2BD2MXhtFChsLjO
T Linné M Berg AC Bergvall B Hjertner J Moreno-López (1992) ArticleTitleThe molecular biology of the porcine paramyxovirus LPMV Vet Microbiol 33 263–273 Occurrence Handle1481359 Occurrence Handle10.1016/0378-1135(92)90054-W
PJ Miller DB Boyle BT Eaton L-F Wang (2003) ArticleTitleFull-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia Virology 317 330–344 Occurrence Handle14698671 Occurrence Handle10.1016/j.virol.2003.08.013 Occurrence Handle1:CAS:528:DC%2BD3sXhtVWjtLvM
AM Mirza R Deng RM Iorio (1994) ArticleTitleSite-directed mutagenesis of a conserved hexapeptide in the paramyxovirus hemagglutinin-neuraminidase glycoprotein: effects on antigenic structure and function J Virol 68 5093–5099 Occurrence Handle8035509 Occurrence Handle1:CAS:528:DyaK2cXltVKiur0%3D
J Moreno-López P Correa-Giron A Martinez A Ericsson (1986) ArticleTitleCharacterization of a paramyxovirus isolated from the brain of a piglet in Mexico Arch Virol 91 221–231 Occurrence Handle3778211 Occurrence Handle10.1007/BF01314282
K Murray P Selleck P Hooper A Hyatt A Gould L Gleeson H Westbury L Hiley L Selvey B Rodwell P Ketterer (1995) ArticleTitleA morbillivirus that caused fatal disease in horses and humans Science 268 94–97 Occurrence Handle7701348 Occurrence Handle10.1126/science.7701348 Occurrence Handle1:CAS:528:DyaK2MXkvV2ksLw%3D
KM Pavri KR Singh FB Hollinger (1971) ArticleTitleIsolation of a new parainfluenza virus from a frugivorous bat, Rousettus leschenaulti, collected at Poona, India Am J Trop Med Hyg 20 125–130 Occurrence Handle4327913 Occurrence Handle1:STN:280:DyaE3M3otF2ktw%3D%3D
AW Philbey PD Kirkland AD Ross RJ Davis AB Gleeson RJ Love PW Daniels AR Gould AD Hyatt (1998) ArticleTitleAn apparently new virus (family Paramyxoviridae) infectious for pigs, humans, and fruit bats Emerg Infect Dis 4 269–271 Occurrence Handle9621197 Occurrence Handle1:STN:280:DyaK1c3osVaitQ%3D%3D
O Poch BM Blumberg L Bougueleret N Tordo (1990) ArticleTitleSequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains J Gen Virol 71 1153–1162 Occurrence Handle2161049 Occurrence Handle1:CAS:528:DyaK3cXksFCqurw%3D
Reynes JM, Counor D, Ong S, Faure C, Seng V, Molia S, Walston J, Georges-Courbot MC, Deubel V, Sarthou JL (2005) Nipah virus in Lyle’s flying foxes, Cambodia. Emerg Infect Dis 11: 1042–1047. Trans R Soc Trop Med Hyg. 2004 Oct; 98(10): 577–584
M Salas-Rojas C Sánchez-Hernández MDL Romero-Almaraz GD Schnell RK Schmid A Aguilar-Setién (2004) ArticleTitlePrevalence of rabies and LPM paramyxovirus antibody in non-hematophagous bats captured in the Central Pacific coast of Mexico Trans R Soc Trop Med Hyg 98 577–584 Occurrence Handle15289094 Occurrence Handle10.1016/j.trstmh.2003.10.019
I Sendow HE Field J Curran Darminto C Morrissy G Meehan T Buick P Daniels (2006) ArticleTitleHenipavirus in Pteropus vampyrus bats, Indonesia Emerg Infect Dis 12 711–712 Occurrence Handle16715584
HA Stephano GM Gay TC Ramírez (1998) ArticleTitleEncephalomyelitis, reproductive failure and corneal opacity (blue eye) in pigs, associated with a paramyxovirus infection Vet Rec 122 6–10
A Sundqvist M Berg P Hernandez-Jauregui T Linné J Moreno-López (1990) ArticleTitleThe structural proteins of a porcine paramyxovirus (LPMV) J Gen Virol 71 609–613 Occurrence Handle2313267 Occurrence Handle1:CAS:528:DyaK3cXhslGgur0%3D Occurrence Handle10.1099/0022-1317-71-3-609
A Sundqvist M Berg J Moreno-López T Linné (1992) ArticleTitleThe haemagglutinin-neuraminidase glycoprotein of the porcine paramyxovirus LPMV: comparison with other paramyxoviruses revealed the closest relationship to simian virus 5 and mumps virus Arch Virol 122 331–340 Occurrence Handle1731697 Occurrence Handle10.1007/BF01317194 Occurrence Handle1:CAS:528:DyaK3sXhsVejt7c%3D
M Svenda M Berg J Moreno-López T Linné (1997) ArticleTitleAnalysis of the large (L) protein gene of the porcine rubulavirus LPMV: identification of possible functional domains Virus Res 48 57–70 Occurrence Handle9140194 Occurrence Handle10.1016/S0168-1702(96)01426-8 Occurrence Handle1:CAS:528:DyaK2sXivFWgsr8%3D
D Tillett BP Burns BA Neilan (2000) ArticleTitleOptimized rapid amplification of cDNA (RACE) for mapping bacterial mRNA transcripts Biotechniques 28 448–456 Occurrence Handle10723556 Occurrence Handle1:CAS:528:DC%2BD3cXhvVejs7o%3D
K-L Tsao B DeBarbieri H Michel DS Waugh (1996) ArticleTitleA versatile plasmid expression vector for the production of biotinylated proteins by site-specific, enzymatic modification in Escherichia coli Gene 169 59–64 Occurrence Handle8635750 Occurrence Handle10.1016/0378-1119(95)00762-8 Occurrence Handle1:CAS:528:DyaK28XhsVakt74%3D
S Wacharapluesadee B Lumlertdacha K Boongird S Wanghongsa L Chanhome P Rollin P Stockton CE Rupprecht TG Ksiazek T Hemachudha (2005) ArticleTitleBat Nipah virus, Thailand Emerg Infect Dis 11 1949–1951 Occurrence Handle16485487
L-F Wang KB Chua M Yu BT Eaton (2003) ArticleTitleGenome diversity of emerging paramyxoviruses Curr Genom 4 263–273 Occurrence Handle10.2174/1389202033490385 Occurrence Handle1:CAS:528:DC%2BD3sXitFWns70%3D
L-F Wang BT Eaton (2001) ArticleTitleEmerging paramyxoviruses Infect Dis Rev 3 52–69
L-F Wang WP Michalski M Yu LI Pritchard G Crameri B Shiell BT Eaton (1998) ArticleTitleA novel P/V/C gene in a new member of the Paramyxoviridae family, which causes lethal infection in humans, horses, and other animals J Virol 72 1482–1490 Occurrence Handle9445051 Occurrence Handle1:CAS:528:DyaK1cXlt1Kguw%3D%3D
L-F Wang M Yu JR White BT Eaton (1996) ArticleTitleBTag: a novel six-residue epitope tag for surveillance and purification of recombinant proteins Gene 169 53–58 Occurrence Handle8635749 Occurrence Handle10.1016/0378-1119(95)00795-4 Occurrence Handle1:CAS:528:DyaK28XhsVaktrc%3D
HG Zeller N Karabatsos CH Calisher JP Digoutte FA Murphy RE Shope (1989) ArticleTitleElectron microscopy and antigenic studies of uncharacterized viruses. I. Evidence suggesting the placement of viruses in families Arenaviridae, Paramyxoviridae, or Poxviridae Arch Virol 108 191–209 Occurrence Handle2690775 Occurrence Handle10.1007/BF01310934 Occurrence Handle1:STN:280:DyaK3c7gtlyktA%3D%3D